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Fluorine in PDB 7ge5: Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339)

Enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339)

All present enzymatic activity of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339):
3.4.22.69;

Protein crystallography data

The structure of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339), PDB code: 7ge5 was solved by D.Fearon, A.Aimon, J.C.Aschenbrenner, B.H.Balcomb, F.K.R.Bertram, J.Brandao-Neto, A.Dias, A.Douangamath, L.Dunnett, A.S.Godoy, T.J.Gorrie-Stone, L.Koekemoer, T.Krojer, R.M.Lithgo, P.Lukacik, P.G.Marples, H.Mikolajek, E.Nelson, C.D.Owen, A.J.Powell, V.L.Rangel, R.Skyner, C.M.Strain-Damerell, W.Thompson, C.W.E.Tomlinson, C.Wild, M.A.Walsh, F.Von Delft, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.12 / 1.64
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.315, 53.489, 44.394, 90, 100.92, 90
R / Rfree (%) 19.2 / 22.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339) (pdb code 7ge5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339), PDB code: 7ge5:

Fluorine binding site 1 out of 1 in 7ge5

Go back to Fluorine Binding Sites List in 7ge5
Fluorine binding site 1 out of 1 in the Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Group Deposition Sars-Cov-2 Main Protease in Complex with Inhibitors From the Covid Moonshot -- Crystal Structure of Sars-Cov-2 Main Protease in Complex with Eri-Ucb-5B47150D-6 (Mpro-X11339) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F404

b:25.8
occ:0.62
F A:N7L404 0.0 25.8 0.6
C10 A:N7L404 1.4 25.4 0.6
C9 A:N7L404 2.4 24.7 0.6
CB A:MET165 2.8 21.0 1.0
CE A:MET165 2.9 42.1 1.0
SD A:MET165 2.9 45.3 1.0
CG A:MET165 3.5 27.3 1.0
O A:HIS164 3.5 18.4 1.0
C7 A:N7L404 3.6 24.2 0.6
CA A:ASP187 3.7 20.1 1.0
C8 A:N7L404 3.8 24.6 0.6
CB A:ASP187 4.0 19.2 1.0
C A:ASP187 4.0 20.5 1.0
CA A:MET165 4.0 19.0 1.0
N A:ARG188 4.1 21.4 1.0
CE A:MET49 4.1 37.7 1.0
C A:HIS164 4.1 17.8 1.0
ND1 A:HIS41 4.2 22.8 1.0
O A:N7L404 4.3 22.2 0.6
C6 A:N7L404 4.4 22.9 0.6
N A:MET165 4.4 17.4 1.0
CE1 A:HIS41 4.5 22.9 1.0
O A:VAL186 4.5 23.4 1.0
O A:ASP187 4.7 20.2 1.0
CB A:HIS164 4.8 15.6 1.0
O A:ARG188 4.8 23.2 1.0
N A:ASP187 4.9 21.1 1.0
O A:HOH688 4.9 36.6 1.0
C A:ARG188 5.0 23.9 1.0
CA A:ARG188 5.0 23.0 1.0

Reference:

M.L.Boby, D.Fearon, M.Ferla, M.Filep, L.Koekemoer, M.C.Robinson, The Covid Moonshot Consortium, J.D.Chodera, A.A.Lee, N.London, A.Von Delft, F.Von Delft. Open Science Discovery of Potent Noncovalent Sars-Cov-2 Main Protease Inhibitors Science 2023.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABO7201
Page generated: Fri Aug 2 07:35:29 2024

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