Fluorine in PDB 7krn: Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
Enzymatic activity of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
All present enzymatic activity of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc:
2.7.7.48;
3.6.4.12;
3.6.4.13;
Other elements in 7krn:
The structure of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
(pdb code 7krn). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc, PDB code: 7krn:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7krn
Go back to
Fluorine Binding Sites List in 7krn
Fluorine binding site 1 out
of 3 in the Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
![](/pictures/F/pdb/kr/7krn-F-sphere_01.jpg) Mono view
![](/pictures/F/pdb/kr/7krn-F-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F706
b:62.4
occ:1.00
|
F1
|
E:AF3706
|
0.0
|
62.4
|
1.0
|
AL
|
E:AF3706
|
1.8
|
62.4
|
1.0
|
NH1
|
E:ARG567
|
2.3
|
65.7
|
1.0
|
O3B
|
E:ADP704
|
2.4
|
69.2
|
1.0
|
N
|
E:GLY538
|
2.8
|
73.2
|
1.0
|
NH2
|
E:ARG567
|
3.0
|
65.7
|
1.0
|
CZ
|
E:ARG567
|
3.1
|
65.7
|
1.0
|
F2
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
F3
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
MG
|
E:MG705
|
3.1
|
66.3
|
1.0
|
CG
|
E:GLN537
|
3.4
|
65.7
|
1.0
|
CA
|
E:GLY538
|
3.4
|
73.2
|
1.0
|
PB
|
E:ADP704
|
3.5
|
69.2
|
1.0
|
C
|
E:GLN537
|
3.7
|
65.7
|
1.0
|
CA
|
E:GLN537
|
3.8
|
65.7
|
1.0
|
O1B
|
E:ADP704
|
3.9
|
69.2
|
1.0
|
CB
|
E:GLN537
|
4.1
|
65.7
|
1.0
|
C
|
E:GLY538
|
4.2
|
73.2
|
1.0
|
O2B
|
E:ADP704
|
4.3
|
69.2
|
1.0
|
OE2
|
E:GLU375
|
4.3
|
45.2
|
1.0
|
NE
|
E:ARG567
|
4.3
|
65.7
|
1.0
|
CD
|
E:GLN537
|
4.5
|
65.7
|
1.0
|
OE1
|
E:GLN537
|
4.6
|
65.7
|
1.0
|
O
|
E:GLY538
|
4.6
|
73.2
|
1.0
|
O
|
E:GLN537
|
4.7
|
65.7
|
1.0
|
CD
|
E:GLU375
|
4.8
|
45.2
|
1.0
|
O3A
|
E:ADP704
|
4.8
|
69.2
|
1.0
|
N
|
E:SER539
|
4.9
|
77.0
|
1.0
|
NZ
|
E:LYS288
|
4.9
|
51.4
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7krn
Go back to
Fluorine Binding Sites List in 7krn
Fluorine binding site 2 out
of 3 in the Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
![](/pictures/F/pdb/kr/7krn-F-sphere_02.jpg) Mono view
![](/pictures/F/pdb/kr/7krn-F-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F706
b:62.4
occ:1.00
|
F2
|
E:AF3706
|
0.0
|
62.4
|
1.0
|
AL
|
E:AF3706
|
1.8
|
62.4
|
1.0
|
O1B
|
E:ADP704
|
2.2
|
69.2
|
1.0
|
NZ
|
E:LYS288
|
2.3
|
51.4
|
1.0
|
N
|
E:GLY285
|
2.9
|
61.0
|
1.0
|
F1
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
O3B
|
E:ADP704
|
3.1
|
69.2
|
1.0
|
F3
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
CA
|
E:PRO284
|
3.1
|
60.5
|
1.0
|
PB
|
E:ADP704
|
3.1
|
69.2
|
1.0
|
NH2
|
E:ARG567
|
3.3
|
65.7
|
1.0
|
MG
|
E:MG705
|
3.4
|
66.3
|
1.0
|
CE
|
E:LYS288
|
3.4
|
51.4
|
1.0
|
C
|
E:PRO284
|
3.5
|
60.5
|
1.0
|
CB
|
E:PRO284
|
3.6
|
60.5
|
1.0
|
CA
|
E:GLY285
|
4.0
|
61.0
|
1.0
|
O3A
|
E:ADP704
|
4.1
|
69.2
|
1.0
|
CZ
|
E:ARG567
|
4.3
|
65.7
|
1.0
|
O2B
|
E:ADP704
|
4.3
|
69.2
|
1.0
|
NH1
|
E:ARG567
|
4.3
|
65.7
|
1.0
|
N
|
E:PRO284
|
4.4
|
60.5
|
1.0
|
O
|
E:PRO283
|
4.6
|
57.5
|
1.0
|
O1A
|
E:ADP704
|
4.6
|
69.2
|
1.0
|
CD
|
E:LYS288
|
4.7
|
51.4
|
1.0
|
O
|
E:PRO284
|
4.7
|
60.5
|
1.0
|
NH1
|
E:ARG443
|
4.7
|
73.0
|
1.0
|
N
|
E:THR286
|
4.8
|
55.6
|
1.0
|
C
|
E:PRO283
|
4.9
|
57.5
|
1.0
|
C
|
E:GLY285
|
4.9
|
61.0
|
1.0
|
NE2
|
E:GLN404
|
5.0
|
58.2
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7krn
Go back to
Fluorine Binding Sites List in 7krn
Fluorine binding site 3 out
of 3 in the Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc
![](/pictures/F/pdb/kr/7krn-F-sphere_03.jpg) Mono view
![](/pictures/F/pdb/kr/7krn-F-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Structure of Sars-Cov-2 Backtracked Complex Bound to NSP13 Helicase - NSP13(1)-Btc within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F706
b:62.4
occ:1.00
|
F3
|
E:AF3706
|
0.0
|
62.4
|
1.0
|
AL
|
E:AF3706
|
1.8
|
62.4
|
1.0
|
MG
|
E:MG705
|
1.9
|
66.3
|
1.0
|
OE2
|
E:GLU375
|
2.6
|
45.2
|
1.0
|
O1B
|
E:ADP704
|
3.0
|
69.2
|
1.0
|
F2
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
F1
|
E:AF3706
|
3.1
|
62.4
|
1.0
|
OG
|
E:SER289
|
3.2
|
53.2
|
1.0
|
NZ
|
E:LYS288
|
3.2
|
51.4
|
1.0
|
PB
|
E:ADP704
|
3.3
|
69.2
|
1.0
|
CE
|
E:LYS288
|
3.3
|
51.4
|
1.0
|
O2B
|
E:ADP704
|
3.4
|
69.2
|
1.0
|
CD
|
E:GLU375
|
3.5
|
45.2
|
1.0
|
O3B
|
E:ADP704
|
3.5
|
69.2
|
1.0
|
OE1
|
E:GLU375
|
3.8
|
45.2
|
1.0
|
OD1
|
E:ASP374
|
4.1
|
39.9
|
1.0
|
CB
|
E:SER289
|
4.6
|
53.2
|
1.0
|
OD2
|
E:ASP374
|
4.6
|
39.9
|
1.0
|
CB
|
E:LYS288
|
4.7
|
51.4
|
1.0
|
CD
|
E:LYS288
|
4.8
|
51.4
|
1.0
|
CG
|
E:ASP374
|
4.8
|
39.9
|
1.0
|
N
|
E:SER289
|
4.8
|
53.2
|
1.0
|
CG
|
E:GLU375
|
4.8
|
45.2
|
1.0
|
CG
|
E:GLN537
|
4.8
|
65.7
|
1.0
|
O3A
|
E:ADP704
|
4.9
|
69.2
|
1.0
|
|
Reference:
B.Malone,
J.Chen,
Q.Wang,
E.C.Llewellyn,
Y.J.Choi,
P.D.B.Olinares,
X.Cao,
C.Hernandez,
E.Eng,
B.T.Chait,
D.E.Shaw,
R.Landick,
S.A.Darst,
E.A.Campbell.
Structural Basis For Backtracking By the Sars-Cov-2 Replication-Transcription Complex Proc.Natl.Acad.Sci.Usa 2021.
ISSN: ESSN 1091-6490
Page generated: Sat Jul 10 14:11:06 2021
|