Fluorine in PDB 7ky5: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State:
7.6.2.1;

Other elements in 7ky5:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State (pdb code 7ky5). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State, PDB code: 7ky5:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7ky5

Go back to Fluorine Binding Sites List in 7ky5
Fluorine binding site 1 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1703

b:193.6
occ:1.00
 F1 A:ALF1703 0.0 193.6 1.0
AL A:ALF1703 1.8 193.6 1.0
F4 A:ALF1703 2.5 193.6 1.0
F3 A:ALF1703 2.5 193.6 1.0
OD1 A:ASP712 2.9 144.4 1.0
C A:THR1032 3.1 162.8 1.0
O A:THR1032 3.3 162.8 1.0
N A:GLY1033 3.3 172.2 1.0
O A:LEU1031 3.5 152.8 1.0
CG A:ASP712 3.6 144.4 1.0
F2 A:ALF1703 3.6 193.6 1.0
CA A:THR1032 3.6 162.8 1.0
CA A:GLY1033 3.7 172.2 1.0
OD2 A:ASP712 3.7 144.4 1.0
N A:THR1032 3.9 162.8 1.0
C A:LEU1031 3.9 152.8 1.0
CG1 A:VAL1148 4.3 166.8 1.0
NZ A:LYS1153 4.6 162.9 1.0
ND2 A:ASN1176 4.7 167.8 1.0
OD1 A:ASP484 4.8 192.2 1.0
CB A:ASP712 4.8 144.4 1.0
CB A:LEU1031 4.9 152.8 1.0
N A:LYS713 5.0 147.6 1.0
O A:VAL1148 5.0 166.8 1.0

Fluorine binding site 2 out of 4 in 7ky5

Go back to Fluorine Binding Sites List in 7ky5
Fluorine binding site 2 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1703

b:193.6
occ:1.00
 F2 A:ALF1703 0.0 193.6 1.0
AL A:ALF1703 1.8 193.6 1.0
F3 A:ALF1703 2.5 193.6 1.0
F4 A:ALF1703 2.5 193.6 1.0
OD1 A:ASP484 2.8 192.2 1.0
CG A:ASP484 3.0 192.2 1.0
O A:LEU483 3.2 176.5 1.0
CA A:ASP484 3.3 192.2 1.0
CB A:ASP484 3.3 192.2 1.0
ND2 A:ASN1176 3.3 167.8 1.0
F1 A:ALF1703 3.6 193.6 1.0
OD2 A:ASP484 3.7 192.2 1.0
CA A:GLY1033 3.9 172.2 1.0
C A:LEU483 4.1 176.5 1.0
N A:ASP484 4.2 192.2 1.0
O A:VAL1148 4.3 166.8 1.0
N A:GLY485 4.3 195.1 1.0
C A:ASP484 4.4 192.2 1.0
NZ A:LYS1153 4.4 162.9 1.0
CG A:ASN1176 4.4 167.8 1.0
N A:GLY1033 4.8 172.2 1.0
CB A:ASN1176 4.8 167.8 1.0
C A:GLY1033 4.8 172.2 1.0

Fluorine binding site 3 out of 4 in 7ky5

Go back to Fluorine Binding Sites List in 7ky5
Fluorine binding site 3 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1703

b:193.6
occ:1.00
 F3 A:ALF1703 0.0 193.6 1.0
AL A:ALF1703 1.8 193.6 1.0
F2 A:ALF1703 2.5 193.6 1.0
F1 A:ALF1703 2.5 193.6 1.0
O A:VAL1148 2.6 166.8 1.0
CG1 A:VAL1148 3.3 166.8 1.0
O A:THR1032 3.4 162.8 1.0
NZ A:LYS1153 3.5 162.9 1.0
CA A:GLY1033 3.5 172.2 1.0
F4 A:ALF1703 3.6 193.6 1.0
C A:VAL1148 3.7 166.8 1.0
C A:THR1032 3.9 162.8 1.0
N A:VAL1148 4.0 166.8 1.0
N A:GLY1033 4.0 172.2 1.0
CA A:VAL1148 4.2 166.8 1.0
CB A:VAL1148 4.4 166.8 1.0
OD1 A:ASP484 4.5 192.2 1.0
CE A:LYS1153 4.6 162.9 1.0
C A:GLY1033 4.8 172.2 1.0
N A:SER1149 4.9 168.7 1.0
CD A:LYS1153 4.9 162.9 1.0
ND2 A:ASN1176 4.9 167.8 1.0
C A:ARG1147 5.0 167.6 1.0
CG A:ASP484 5.0 192.2 1.0

Fluorine binding site 4 out of 4 in 7ky5

Go back to Fluorine Binding Sites List in 7ky5
Fluorine binding site 4 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E2P Transition State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1703

b:193.6
occ:1.00
 F4 A:ALF1703 0.0 193.6 1.0
AL A:ALF1703 1.8 193.6 1.0
F1 A:ALF1703 2.5 193.6 1.0
F2 A:ALF1703 2.5 193.6 1.0
OD1 A:ASP712 3.0 144.4 1.0
ND2 A:ASN1176 3.0 167.8 1.0
OD1 A:ASP484 3.2 192.2 1.0
OD2 A:ASP712 3.3 144.4 1.0
N A:GLY485 3.4 195.1 1.0
CG A:ASP712 3.5 144.4 1.0
F3 A:ALF1703 3.6 193.6 1.0
CG2 A:THR714 3.7 150.2 1.0
CA A:ASP484 3.7 192.2 1.0
C A:ASP484 3.9 192.2 1.0
CA A:GLY1033 4.0 172.2 1.0
CG A:ASP484 4.1 192.2 1.0
CG A:ASN1176 4.1 167.8 1.0
N A:GLY1033 4.2 172.2 1.0
CA A:GLY485 4.4 195.1 1.0
CB A:ASP484 4.4 192.2 1.0
O A:LEU483 4.5 176.5 1.0
OD1 A:ASN1176 4.5 167.8 1.0
N A:ASP484 4.7 192.2 1.0
C A:THR1032 4.7 162.8 1.0
N A:LYS713 4.9 147.6 1.0
N A:THR714 4.9 150.2 1.0
C A:LEU483 5.0 176.5 1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163
Page generated: Fri Aug 2 08:34:08 2024

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