Fluorine in PDB 7ky9: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State:
7.6.2.1;

Other elements in 7ky9:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State (pdb code 7ky9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State, PDB code: 7ky9:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7ky9

Go back to Fluorine Binding Sites List in 7ky9
Fluorine binding site 1 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1702

b:315.5
occ:1.00
 F1 A:ALF1702 0.0 315.5 1.0
AL A:ALF1702 1.8 315.5 1.0
OE2 A:GLU1193 2.4 285.2 1.0
F3 A:ALF1702 2.5 315.5 1.0
F4 A:ALF1702 2.5 315.5 1.0
CD A:GLU1193 3.1 285.2 1.0
OE1 A:GLU1193 3.2 285.2 1.0
CD A:PRO844 3.3 275.4 1.0
F2 A:ALF1702 3.6 315.5 1.0
CG A:PRO844 3.8 275.4 1.0
N7 A:ADP1701 4.4 282.7 1.0
O A:GLN842 4.4 286.9 1.0
CG A:GLU1193 4.5 285.2 1.0
N A:PRO844 4.5 275.4 1.0
CA A:SER843 4.6 282.2 1.0
OD1 A:ASP845 4.8 294.5 1.0

Fluorine binding site 2 out of 4 in 7ky9

Go back to Fluorine Binding Sites List in 7ky9
Fluorine binding site 2 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1702

b:315.5
occ:1.00
 F2 A:ALF1702 0.0 315.5 1.0
AL A:ALF1702 1.8 315.5 1.0
F3 A:ALF1702 2.5 315.5 1.0
F4 A:ALF1702 2.5 315.5 1.0
O2B A:ADP1701 3.3 282.7 1.0
F1 A:ALF1702 3.6 315.5 1.0
O1B A:ADP1701 3.7 282.7 1.0
PB A:ADP1701 4.1 282.7 1.0
O1A A:ADP1701 4.1 282.7 1.0
OE1 A:GLU1193 4.4 285.2 1.0
N7 A:ADP1701 4.5 282.7 1.0
MG A:MG1703 4.5 293.7 1.0
CE2 A:PHE887 4.5 285.9 1.0
C8 A:ADP1701 4.6 282.7 1.0
CG2 A:THR714 4.6 239.6 1.0
OE2 A:GLU1193 4.7 285.2 1.0
CZ A:PHE887 4.8 285.9 1.0
CD A:GLU1193 4.9 285.2 1.0

Fluorine binding site 3 out of 4 in 7ky9

Go back to Fluorine Binding Sites List in 7ky9
Fluorine binding site 3 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1702

b:315.5
occ:1.00
 F3 A:ALF1702 0.0 315.5 1.0
AL A:ALF1702 1.8 315.5 1.0
OE1 A:GLU1193 2.2 285.2 1.0
F2 A:ALF1702 2.5 315.5 1.0
F1 A:ALF1702 2.5 315.5 1.0
CD A:GLU1193 3.1 285.2 1.0
CG2 A:THR714 3.2 239.6 1.0
OE2 A:GLU1193 3.2 285.2 1.0
F4 A:ALF1702 3.6 315.5 1.0
MG A:MG1703 4.1 293.7 1.0
CB A:THR714 4.5 239.6 1.0
CG A:GLU1193 4.5 285.2 1.0
O1A A:ADP1701 4.7 282.7 1.0
CB A:GLU1193 4.9 285.2 1.0

Fluorine binding site 4 out of 4 in 7ky9

Go back to Fluorine Binding Sites List in 7ky9
Fluorine binding site 4 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF2-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1702

b:315.5
occ:1.00
 F4 A:ALF1702 0.0 315.5 1.0
AL A:ALF1702 1.8 315.5 1.0
F1 A:ALF1702 2.5 315.5 1.0
F2 A:ALF1702 2.5 315.5 1.0
N7 A:ADP1701 2.6 282.7 1.0
C8 A:ADP1701 3.4 282.7 1.0
F3 A:ALF1702 3.6 315.5 1.0
C5 A:ADP1701 3.7 282.7 1.0
OE2 A:GLU1193 4.1 285.2 1.0
N6 A:ADP1701 4.2 282.7 1.0
C6 A:ADP1701 4.5 282.7 1.0
O2B A:ADP1701 4.5 282.7 1.0
N9 A:ADP1701 4.7 282.7 1.0
CD2 A:PHE887 4.7 285.9 1.0
CE2 A:PHE887 4.8 285.9 1.0
C4 A:ADP1701 4.9 282.7 1.0
OE1 A:GLU1193 5.0 285.2 1.0
CD A:GLU1193 5.0 285.2 1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163
Page generated: Fri Aug 2 08:34:27 2024

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