Fluorine in PDB 7kyb: Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State

Enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State

All present enzymatic activity of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State:
7.6.2.1;

Other elements in 7kyb:

The structure of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State (pdb code 7kyb). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State, PDB code: 7kyb:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7kyb

Go back to Fluorine Binding Sites List in 7kyb
Fluorine binding site 1 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1603

b:37.5
occ:1.00
 F1 A:ALF1603 0.0 37.5 1.0
AL A:ALF1603 1.8 37.5 1.0
OE2 A:GLU1151 2.2 48.9 1.0
F3 A:ALF1603 2.5 37.5 1.0
F4 A:ALF1603 2.5 37.5 1.0
OD1 A:ASP1130 2.7 29.7 1.0
OD2 A:ASP1130 2.8 29.7 1.0
CD A:GLU1151 2.9 48.9 1.0
CG A:ASP1130 2.9 29.7 1.0
O A:ASP1130 3.1 29.7 1.0
CA A:GLY670 3.5 27.7 1.0
F2 A:ALF1603 3.6 37.5 1.0
OE1 A:GLU1151 3.7 48.9 1.0
CG A:GLU1151 3.7 48.9 1.0
N A:GLY670 3.8 27.7 1.0
C A:ASP1130 4.0 29.7 1.0
OD1 A:ASP667 4.1 25.6 1.0
ND2 A:ASN675 4.2 48.2 1.0
CB A:ASP1130 4.2 29.7 1.0
CG2 A:THR669 4.3 35.2 1.0
C A:THR669 4.5 35.2 1.0
C A:GLY670 4.5 27.7 1.0
CA A:ASP1130 4.5 29.7 1.0
N A:ASP1130 4.7 29.7 1.0
OD1 A:ASP1134 4.8 31.7 1.0
O A:THR669 4.8 35.2 1.0
CG A:ASN675 4.9 48.2 1.0
N A:GLY1131 5.0 33.0 1.0
N A:THR671 5.0 25.8 1.0

Fluorine binding site 2 out of 4 in 7kyb

Go back to Fluorine Binding Sites List in 7kyb
Fluorine binding site 2 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1603

b:37.5
occ:1.00
 F2 A:ALF1603 0.0 37.5 1.0
AL A:ALF1603 1.8 37.5 1.0
OD1 A:ASP667 1.9 25.6 1.0
O1B A:ADP1602 2.2 47.2 1.0
F4 A:ALF1603 2.5 37.5 1.0
F3 A:ALF1603 2.5 37.5 1.0
CG A:ASP667 2.9 25.6 1.0
PB A:ADP1602 3.2 47.2 1.0
OD2 A:ASP667 3.3 25.6 1.0
CG2 A:THR669 3.3 35.2 1.0
O3B A:ADP1602 3.3 47.2 1.0
F1 A:ALF1603 3.6 37.5 1.0
O2B A:ADP1602 4.1 47.2 1.0
ND2 A:ASN1133 4.1 36.0 1.0
OD1 A:ASP1134 4.2 31.7 1.0
CB A:ASP667 4.3 25.6 1.0
N A:THR669 4.3 35.2 1.0
O A:ASP1130 4.4 29.7 1.0
O3A A:ADP1602 4.4 47.2 1.0
CB A:THR669 4.5 35.2 1.0
N A:GLY670 4.6 27.7 1.0
MG A:MG1604 4.6 31.0 1.0
NZ A:LYS1110 4.8 28.2 1.0
O2A A:ADP1602 4.8 47.2 1.0
CA A:THR669 4.8 35.2 1.0
OD2 A:ASP1134 4.8 31.7 1.0
N A:LYS668 4.9 31.0 1.0
C A:THR669 4.9 35.2 1.0
CG A:ASP1134 4.9 31.7 1.0

Fluorine binding site 3 out of 4 in 7kyb

Go back to Fluorine Binding Sites List in 7kyb
Fluorine binding site 3 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1603

b:37.5
occ:1.00
 F3 A:ALF1603 0.0 37.5 1.0
AL A:ALF1603 1.8 37.5 1.0
OD1 A:ASP667 1.9 25.6 1.0
F1 A:ALF1603 2.5 37.5 1.0
F2 A:ALF1603 2.5 37.5 1.0
OD1 A:ASP1130 2.7 29.7 1.0
CG A:ASP667 3.0 25.6 1.0
OD1 A:ASP1134 3.2 31.7 1.0
O A:ASP1130 3.3 29.7 1.0
N A:GLY670 3.3 27.7 1.0
CB A:ASP667 3.5 25.6 1.0
F4 A:ALF1603 3.6 37.5 1.0
CA A:GLY670 3.7 27.7 1.0
CG A:ASP1130 3.7 29.7 1.0
OG1 A:THR671 3.8 25.8 1.0
N A:THR671 4.0 25.8 1.0
N A:ASP1130 4.0 29.7 1.0
OD2 A:ASP667 4.1 25.6 1.0
C A:GLY670 4.2 27.7 1.0
OD2 A:ASP1130 4.2 29.7 1.0
CG2 A:THR669 4.3 35.2 1.0
N A:THR669 4.3 35.2 1.0
C A:ASP1130 4.3 29.7 1.0
CG A:ASP1134 4.3 31.7 1.0
C A:THR669 4.3 35.2 1.0
N A:LYS668 4.6 31.0 1.0
CA A:ASP1130 4.6 29.7 1.0
O1B A:ADP1602 4.6 47.2 1.0
OE2 A:GLU1151 4.6 48.9 1.0
C A:LYS668 4.7 31.0 1.0
CA A:ASP667 4.8 25.6 1.0
CB A:ASP1130 4.8 29.7 1.0
OD2 A:ASP1134 4.8 31.7 1.0
CA A:THR669 4.8 35.2 1.0
CB A:THR671 4.9 25.8 1.0
C A:ASP667 4.9 25.6 1.0
CA A:GLY1129 5.0 17.4 1.0
C A:GLY1129 5.0 17.4 1.0

Fluorine binding site 4 out of 4 in 7kyb

Go back to Fluorine Binding Sites List in 7kyb
Fluorine binding site 4 out of 4 in the Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of the S. Cerevisiae Phosphatidylcholine Flippase DNF1-LEM3 Complex in the E1-Adp State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1603

b:37.5
occ:1.00
 F4 A:ALF1603 0.0 37.5 1.0
AL A:ALF1603 1.8 37.5 1.0
F1 A:ALF1603 2.5 37.5 1.0
F2 A:ALF1603 2.5 37.5 1.0
MG A:MG1604 3.0 31.0 1.0
O3B A:ADP1602 3.2 47.2 1.0
CG2 A:THR669 3.4 35.2 1.0
OE2 A:GLU1151 3.5 48.9 1.0
OE1 A:GLU1151 3.5 48.9 1.0
F3 A:ALF1603 3.6 37.5 1.0
CD A:GLU1151 3.6 48.9 1.0
O1B A:ADP1602 3.9 47.2 1.0
PB A:ADP1602 4.1 47.2 1.0
OD1 A:ASP667 4.1 25.6 1.0
O A:ASP1130 4.2 29.7 1.0
O2A A:ADP1602 4.4 47.2 1.0
ND2 A:ASN675 4.5 48.2 1.0
CG A:GLU1151 4.7 48.9 1.0
CB A:THR669 4.9 35.2 1.0
N A:GLY670 4.9 27.7 1.0
ND2 A:ASN1133 5.0 36.0 1.0

Reference:

L.Bai, Q.You, B.K.Jain, H.D.Duan, A.Kovach, T.R.Graham, H.Li. Transport Mechanism of P4 Atpase Phosphatidylcholine Flippases. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33320091
DOI: 10.7554/ELIFE.62163
Page generated: Sun Jan 24 16:01:42 2021

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