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Fluorine in PDB 7l4c: Crystal Structure of the DRM2-Ctt Dna Complex

Enzymatic activity of Crystal Structure of the DRM2-Ctt Dna Complex

All present enzymatic activity of Crystal Structure of the DRM2-Ctt Dna Complex:
2.1.1.37;

Protein crystallography data

The structure of Crystal Structure of the DRM2-Ctt Dna Complex, PDB code: 7l4c was solved by J.Fang, J.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.29 / 2.11
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 54.376, 232.512, 117.789, 90, 90, 90
R / Rfree (%) 18.5 / 21.5

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the DRM2-Ctt Dna Complex (pdb code 7l4c). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of the DRM2-Ctt Dna Complex, PDB code: 7l4c:

Fluorine binding site 1 out of 1 in 7l4c

Go back to Fluorine Binding Sites List in 7l4c
Fluorine binding site 1 out of 1 in the Crystal Structure of the DRM2-Ctt Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the DRM2-Ctt Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F10

b:55.1
occ:1.00
F C:C4910 0.0 55.1 1.0
C5 C:C4910 1.4 38.3 1.0
CM5 C:C4910 2.1 53.5 1.0
C4 C:C4910 2.1 47.0 1.0
C6 C:C4910 2.2 37.2 1.0
SG A:CYS587 2.5 46.9 1.0
N4 C:C4910 2.5 42.4 1.0
N A:CYS587 2.8 34.0 1.0
CB A:CYS587 2.8 45.7 1.0
O A:SER585 3.0 34.1 1.0
N3 C:C4910 3.3 39.2 1.0
C A:PRO586 3.3 40.0 1.0
CA A:CYS587 3.3 36.8 1.0
N1 C:C4910 3.4 35.6 1.0
CA A:PRO586 3.6 30.0 1.0
C2 C:C4910 3.8 33.9 1.0
OD1 A:ASN313 3.8 33.2 1.0
O A:HOH1008 4.0 39.5 1.0
C A:SER585 4.0 31.5 1.0
O A:PRO586 4.2 37.6 1.0
N A:PRO586 4.3 35.2 1.0
CG A:ASN313 4.6 34.0 1.0
C A:CYS587 4.6 30.7 1.0
SD A:SAH701 4.6 35.1 1.0
C1' C:C4910 4.7 36.7 1.0
OD1 A:ASN480 4.8 38.6 1.0
O2 C:C4910 4.9 38.1 1.0
ND2 A:ASN313 4.9 32.1 1.0
O A:ASN480 4.9 35.3 1.0
CB A:PRO586 5.0 36.8 1.0
C5' A:SAH701 5.0 32.4 1.0

Reference:

J.Fang, S.M.Leichter, J.Jiang, M.Biswal, J.Lu, Z.M.Zhang, W.Ren, J.Zhai, Q.Cui, X.Zhong, J.Song. Substrate Deformation Regulates DRM2-Mediated Dna Methylation in Plants. Sci Adv V. 7 2021.
ISSN: ESSN 2375-2548
PubMed: 34078593
DOI: 10.1126/SCIADV.ABD9224
Page generated: Fri Aug 2 08:43:34 2024

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