Fluorine in PDB 7ldd: Native Ampa Receptor

The structure of Native Ampa Receptor also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the Native Ampa Receptor (pdb code 7ldd). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the Native Ampa Receptor, PDB code: 7ldd:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:82.4 occ:1.00 FAF A:ZK1901 0.0 82.4 1.0 CAZ A:ZK1901 1.4 82.4 1.0 FAH A:ZK1901 2.2 82.4 1.0 FAG A:ZK1901 2.2 82.4 1.0 CAS A:ZK1901 2.4 82.4 1.0 CAJ A:ZK1901 2.7 82.4 1.0 CB A:PRO474 3.5 64.9 1.0 OH A:TYR728 3.5 83.9 1.0 OH A:TYR446 3.6 78.1 1.0 OD2 A:ASP399 3.6 82.3 1.0 OD1 A:ASP399 3.6 82.3 1.0 CAR A:ZK1901 3.7 82.4 1.0 CG A:PRO474 3.7 64.9 1.0 CG A:ASP399 3.8 82.3 1.0 CE2 A:TYR401 3.8 75.3 1.0 CAV A:ZK1901 4.1 82.4 1.0 CE1 A:TYR728 4.1 83.9 1.0 CZ A:TYR728 4.2 83.9 1.0 NAX A:ZK1901 4.3 82.4 1.0 CD2 A:TYR401 4.4 75.3 1.0 O A:PRO474 4.5 64.9 1.0 OE1 A:GLU701 4.5 80.4 1.0 CZ A:TYR446 4.5 78.1 1.0 CZ A:TYR401 4.6 75.3 1.0 OH A:TYR401 4.6 75.3 1.0 CAI A:ZK1901 4.8 82.4 1.0 CA A:PRO474 4.8 64.9 1.0 CB A:ASP399 4.8 82.3 1.0 NAP A:ZK1901 4.9 82.4 1.0 CAN A:ZK1901 4.9 82.4 1.0 CAW A:ZK1901 4.9 82.4 1.0 C A:PRO474 5.0 64.9 1.0 CAM A:ZK1901 5.0 82.4 1.0

Fluorine binding site 2 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:82.4 occ:1.00 FAG A:ZK1901 0.0 82.4 1.0 CAZ A:ZK1901 1.4 82.4 1.0 FAF A:ZK1901 2.2 82.4 1.0 FAH A:ZK1901 2.2 82.4 1.0 CAS A:ZK1901 2.4 82.4 1.0 NAX A:ZK1901 3.0 82.4 1.0 CAR A:ZK1901 3.0 82.4 1.0 OE1 A:GLU701 3.1 80.4 1.0 CAM A:ZK1901 3.1 82.4 1.0 OH A:TYR728 3.3 83.9 1.0 CAJ A:ZK1901 3.5 82.4 1.0 CAN A:ZK1901 3.8 82.4 1.0 CD A:GLU701 4.1 80.4 1.0 OG1 A:THR703 4.3 73.1 1.0 OD1 A:ASP399 4.3 82.3 1.0 CAI A:ZK1901 4.3 82.4 1.0 CB A:MET704 4.3 78.2 1.0 CAK A:ZK1901 4.5 82.4 1.0 CZ A:TYR728 4.5 83.9 1.0 CAV A:ZK1901 4.7 82.4 1.0 CE2 A:TYR401 4.7 75.3 1.0 OE2 A:GLU701 4.8 80.4 1.0 SD A:MET704 4.8 78.2 1.0 CG A:MET704 4.9 78.2 1.0 OH A:TYR401 4.9 75.3 1.0 CE1 A:TYR728 4.9 83.9 1.0 CAL A:ZK1901 5.0 82.4 1.0 CB A:GLU701 5.0 80.4 1.0

Fluorine binding site 3 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:82.4 occ:1.00 FAH A:ZK1901 0.0 82.4 1.0 CAZ A:ZK1901 1.4 82.4 1.0 FAF A:ZK1901 2.2 82.4 1.0 FAG A:ZK1901 2.2 82.4 1.0 OD1 A:ASP399 2.4 82.3 1.0 CAS A:ZK1901 2.4 82.4 1.0 CAR A:ZK1901 3.0 82.4 1.0 NAX A:ZK1901 3.1 82.4 1.0 CAN A:ZK1901 3.1 82.4 1.0 CG A:ASP399 3.1 82.3 1.0 OD2 A:ASP399 3.3 82.3 1.0 CAJ A:ZK1901 3.4 82.4 1.0 OH A:TYR446 3.6 78.1 1.0 CAM A:ZK1901 4.0 82.4 1.0 CAI A:ZK1901 4.3 82.4 1.0 CB A:ASP399 4.5 82.3 1.0 CAL A:ZK1901 4.5 82.4 1.0 CAV A:ZK1901 4.6 82.4 1.0 CZ A:TYR446 4.7 78.1 1.0 SD A:MET704 4.8 78.2 1.0 O A:GLU398 5.0 88.0 1.0

Fluorine binding site 4 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:73.1 occ:1.00 FAF B:ZK1901 0.0 73.1 1.0 CAZ B:ZK1901 1.4 73.1 1.0 FAH B:ZK1901 2.2 73.1 1.0 FAG B:ZK1901 2.2 73.1 1.0 CAS B:ZK1901 2.4 73.1 1.0 CAJ B:ZK1901 2.7 73.1 1.0 CE2 B:TYR405 3.1 92.1 1.0 OH B:TYR732 3.7 59.7 1.0 CAR B:ZK1901 3.7 73.1 1.0 OH B:TYR405 3.7 92.1 1.0 CZ B:TYR405 3.8 92.1 1.0 CG B:PRO478 3.9 69.5 1.0 CD2 B:TYR405 4.0 92.1 1.0 CAV B:ZK1901 4.1 73.1 1.0 CZ B:TYR732 4.1 59.7 1.0 OG1 B:THR707 4.1 82.2 1.0 CB B:PRO478 4.2 69.5 1.0 NAX B:ZK1901 4.3 73.1 1.0 CE2 B:TYR732 4.5 59.7 1.0 CE B:MET708 4.5 88.5 1.0 CE1 B:TYR732 4.7 59.7 1.0 CAI B:ZK1901 4.8 73.1 1.0 NAP B:ZK1901 4.9 73.1 1.0 CAN B:ZK1901 4.9 73.1 1.0 O B:PRO478 4.9 69.5 1.0 CAW B:ZK1901 4.9 73.1 1.0 CG B:GLU402 5.0 100.2 1.0 CAM B:ZK1901 5.0 73.1 1.0 CE1 B:TYR405 5.0 92.1 1.0

Fluorine binding site 5 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:73.1 occ:1.00 FAG B:ZK1901 0.0 73.1 1.0 CAZ B:ZK1901 1.4 73.1 1.0 FAF B:ZK1901 2.2 73.1 1.0 FAH B:ZK1901 2.2 73.1 1.0 CAS B:ZK1901 2.4 73.1 1.0 NAX B:ZK1901 2.9 73.1 1.0 CAR B:ZK1901 3.0 73.1 1.0 CAM B:ZK1901 3.1 73.1 1.0 CE B:MET708 3.4 88.5 1.0 CAJ B:ZK1901 3.5 73.1 1.0 OG1 B:THR707 3.7 82.2 1.0 CAN B:ZK1901 3.8 73.1 1.0 OH B:TYR732 4.1 59.7 1.0 CG B:GLU705 4.1 72.9 1.0 CB B:MET708 4.1 88.5 1.0 CAI B:ZK1901 4.3 73.1 1.0 CB B:GLU705 4.3 72.9 1.0 CAK B:ZK1901 4.5 73.1 1.0 N B:MET708 4.7 88.5 1.0 CAV B:ZK1901 4.7 73.1 1.0 CG B:MET708 4.7 88.5 1.0 CE2 B:TYR405 4.7 92.1 1.0 SD B:MET708 4.9 88.5 1.0 CAL B:ZK1901 4.9 73.1 1.0 CA B:MET708 4.9 88.5 1.0

Fluorine binding site 6 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:73.1 occ:1.00 FAH B:ZK1901 0.0 73.1 1.0 CAZ B:ZK1901 1.4 73.1 1.0 FAF B:ZK1901 2.2 73.1 1.0 FAG B:ZK1901 2.2 73.1 1.0 CAS B:ZK1901 2.4 73.1 1.0 CAR B:ZK1901 3.1 73.1 1.0 NAX B:ZK1901 3.1 73.1 1.0 CAN B:ZK1901 3.1 73.1 1.0 CD B:GLU402 3.3 100.2 1.0 CE B:MET708 3.3 88.5 1.0 OE1 B:GLU402 3.3 100.2 1.0 CAJ B:ZK1901 3.4 73.1 1.0 CG B:GLU402 3.5 100.2 1.0 OE2 B:GLU402 3.7 100.2 1.0 CAM B:ZK1901 4.0 73.1 1.0 CE2 B:TYR405 4.1 92.1 1.0 CAI B:ZK1901 4.4 73.1 1.0 CD2 B:TYR405 4.5 92.1 1.0 CB B:GLU402 4.5 100.2 1.0 CAL B:ZK1901 4.5 73.1 1.0 CAV B:ZK1901 4.6 73.1 1.0

Fluorine binding site 7 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:78.1 occ:1.00 FAF C:ZK1901 0.0 78.1 1.0 CAZ C:ZK1901 1.4 78.1 1.0 FAH C:ZK1901 2.2 78.1 1.0 FAG C:ZK1901 2.2 78.1 1.0 CAS C:ZK1901 2.4 78.1 1.0 CAJ C:ZK1901 2.7 78.1 1.0 CB C:PRO474 3.5 60.5 1.0 OH C:TYR728 3.5 50.2 1.0 OH C:TYR446 3.6 75.9 1.0 OD2 C:ASP399 3.6 79.3 1.0 OD1 C:ASP399 3.6 79.3 1.0 CAR C:ZK1901 3.7 78.1 1.0 CG C:PRO474 3.7 60.5 1.0 CG C:ASP399 3.8 79.3 1.0 CE2 C:TYR401 3.8 72.3 1.0 CAV C:ZK1901 4.1 78.1 1.0 CE1 C:TYR728 4.1 50.2 1.0 CZ C:TYR728 4.2 50.2 1.0 NAX C:ZK1901 4.3 78.1 1.0 CD2 C:TYR401 4.5 72.3 1.0 OE1 C:GLU701 4.5 77.4 1.0 O C:PRO474 4.5 60.5 1.0 CZ C:TYR446 4.6 75.9 1.0 CZ C:TYR401 4.6 72.3 1.0 OH C:TYR401 4.7 72.3 1.0 CAI C:ZK1901 4.8 78.1 1.0 CA C:PRO474 4.8 60.5 1.0 CB C:ASP399 4.8 79.3 1.0 NAP C:ZK1901 4.9 78.1 1.0 CAN C:ZK1901 4.9 78.1 1.0 CAW C:ZK1901 4.9 78.1 1.0 C C:PRO474 5.0 60.5 1.0 CAM C:ZK1901 5.0 78.1 1.0

Fluorine binding site 8 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:78.1 occ:1.00 FAG C:ZK1901 0.0 78.1 1.0 CAZ C:ZK1901 1.4 78.1 1.0 FAF C:ZK1901 2.2 78.1 1.0 FAH C:ZK1901 2.2 78.1 1.0 CAS C:ZK1901 2.4 78.1 1.0 NAX C:ZK1901 3.0 78.1 1.0 CAR C:ZK1901 3.0 78.1 1.0 OE1 C:GLU701 3.0 77.4 1.0 CAM C:ZK1901 3.1 78.1 1.0 OH C:TYR728 3.3 50.2 1.0 CAJ C:ZK1901 3.5 78.1 1.0 CAN C:ZK1901 3.8 78.1 1.0 CD C:GLU701 4.1 77.4 1.0 OD1 C:ASP399 4.3 79.3 1.0 CAI C:ZK1901 4.3 78.1 1.0 CB C:MET704 4.4 77.2 1.0 OG1 C:THR703 4.4 71.3 1.0 CAK C:ZK1901 4.5 78.1 1.0 CZ C:TYR728 4.5 50.2 1.0 CAV C:ZK1901 4.7 78.1 1.0 OE2 C:GLU701 4.8 77.4 1.0 CE2 C:TYR401 4.8 72.3 1.0 SD C:MET704 4.8 77.2 1.0 CG C:MET704 4.9 77.2 1.0 CE1 C:TYR728 4.9 50.2 1.0 CAL C:ZK1901 5.0 78.1 1.0 CB C:GLU701 5.0 77.4 1.0 OH C:TYR401 5.0 72.3 1.0

Fluorine binding site 9 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:78.1 occ:1.00 FAH C:ZK1901 0.0 78.1 1.0 CAZ C:ZK1901 1.4 78.1 1.0 FAF C:ZK1901 2.2 78.1 1.0 FAG C:ZK1901 2.2 78.1 1.0 OD1 C:ASP399 2.4 79.3 1.0 CAS C:ZK1901 2.4 78.1 1.0 CAR C:ZK1901 3.0 78.1 1.0 NAX C:ZK1901 3.1 78.1 1.0 CAN C:ZK1901 3.1 78.1 1.0 CG C:ASP399 3.1 79.3 1.0 OD2 C:ASP399 3.3 79.3 1.0 CAJ C:ZK1901 3.4 78.1 1.0 OH C:TYR446 3.6 75.9 1.0 CAM C:ZK1901 4.0 78.1 1.0 CAI C:ZK1901 4.3 78.1 1.0 CB C:ASP399 4.5 79.3 1.0 CAL C:ZK1901 4.5 78.1 1.0 CAV C:ZK1901 4.6 78.1 1.0 CZ C:TYR446 4.8 75.9 1.0 SD C:MET704 4.9 77.2 1.0 O C:GLU398 5.0 86.8 1.0

Fluorine binding site 10 out of 18 in the Native Ampa Receptor


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Native Ampa Receptor within 5.0Å range: probe atom residue distance (Å) B Occ D:F906 b:73.0 occ:1.00 FAF D:ZK1906 0.0 73.0 1.0 CAZ D:ZK1906 1.4 73.0 1.0 FAH D:ZK1906 2.2 73.0 1.0 FAG D:ZK1906 2.2 73.0 1.0 CAS D:ZK1906 2.4 73.0 1.0 CAJ D:ZK1906 2.7 73.0 1.0 CE2 D:TYR405 3.1 91.2 1.0 OH D:TYR732 3.6 59.5 1.0 OH D:TYR405 3.7 91.2 1.0 CAR D:ZK1906 3.7 73.0 1.0 CZ D:TYR405 3.8 91.2 1.0 CG D:PRO478 3.9 69.4 1.0 CD2 D:TYR405 4.0 91.2 1.0 CZ D:TYR732 4.1 59.5 1.0 CAV D:ZK1906 4.1 73.0 1.0 OG1 D:THR707 4.2 82.7 1.0 CB D:PRO478 4.2 69.4 1.0 NAX D:ZK1906 4.3 73.0 1.0 CE2 D:TYR732 4.5 59.5 1.0 CE D:MET708 4.5 88.5 1.0 CE1 D:TYR732 4.7 59.5 1.0 CAI D:ZK1906 4.8 73.0 1.0 NAP D:ZK1906 4.9 73.0 1.0 CAN D:ZK1906 4.9 73.0 1.0 O D:PRO478 4.9 69.4 1.0 CAW D:ZK1906 4.9 73.0 1.0 CAM D:ZK1906 5.0 73.0 1.0 CG D:GLU402 5.0 98.7 1.0 CE1 D:TYR405 5.0 91.2 1.0

J.Yu, P.Rao, S.Clark, J.Mitra, T.Ha, E.Gouaux. Hippocampal Ampa Receptor Assemblies and Mechanism of Allosteric Inhibition Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03540-0