Fluorine in PDB 7lep: The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution

The structure of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Fluorine atom in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution (pdb code 7lep). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 18 binding sites of Fluorine where determined in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution, PDB code: 7lep:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:59.9 occ:1.00 FAF A:ZK1901 0.0 59.9 1.0 CAZ A:ZK1901 1.4 59.9 1.0 FAG A:ZK1901 2.2 59.9 1.0 FAH A:ZK1901 2.2 59.9 1.0 CAS A:ZK1901 2.3 59.9 1.0 CAJ A:ZK1901 2.6 59.9 1.0 CE2 A:TYR401 3.6 48.0 1.0 CAR A:ZK1901 3.6 59.9 1.0 OH A:TYR446 3.8 54.6 1.0 CG A:PRO474 4.0 36.2 1.0 CAV A:ZK1901 4.0 59.9 1.0 CD2 A:TYR401 4.2 48.0 1.0 NAX A:ZK1901 4.3 59.9 1.0 CB A:PRO474 4.3 36.2 1.0 CZ A:TYR401 4.4 48.0 1.0 OH A:TYR728 4.4 32.2 1.0 OH A:TYR401 4.5 48.0 1.0 CE2 A:TYR446 4.6 54.6 1.0 CAN A:ZK1901 4.7 59.9 1.0 CZ A:TYR446 4.7 54.6 1.0 CAI A:ZK1901 4.7 59.9 1.0 NAP A:ZK1901 4.8 59.9 1.0 OE1 A:GLU701 4.8 60.2 1.0 CAW A:ZK1901 4.9 59.9 1.0 CE2 A:TYR728 4.9 32.2 1.0 CZ A:TYR728 5.0 32.2 1.0

Fluorine binding site 2 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:59.9 occ:1.00 FAG A:ZK1901 0.0 59.9 1.0 CAZ A:ZK1901 1.4 59.9 1.0 FAF A:ZK1901 2.2 59.9 1.0 FAH A:ZK1901 2.2 59.9 1.0 CAS A:ZK1901 2.3 59.9 1.0 NAX A:ZK1901 2.8 59.9 1.0 CAR A:ZK1901 2.9 59.9 1.0 CAM A:ZK1901 3.3 59.9 1.0 CAJ A:ZK1901 3.4 59.9 1.0 CAN A:ZK1901 3.4 59.9 1.0 OE1 A:GLU701 3.7 60.2 1.0 CAI A:ZK1901 4.2 59.9 1.0 SD A:MET704 4.3 58.5 1.0 CB A:MET704 4.4 58.5 1.0 OH A:TYR728 4.5 32.2 1.0 OG1 A:THR703 4.6 54.1 1.0 CG A:MET704 4.6 58.5 1.0 CAV A:ZK1901 4.6 59.9 1.0 CE2 A:TYR401 4.6 48.0 1.0 CAK A:ZK1901 4.7 59.9 1.0 CD A:GLU701 4.7 60.2 1.0 CAL A:ZK1901 4.7 59.9 1.0 OAQ A:ZK1901 4.9 59.9 1.0 CAW A:ZK1901 4.9 59.9 1.0 OH A:TYR401 5.0 48.0 1.0

Fluorine binding site 3 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:F901 b:59.9 occ:1.00 FAH A:ZK1901 0.0 59.9 1.0 CAZ A:ZK1901 1.4 59.9 1.0 FAF A:ZK1901 2.2 59.9 1.0 FAG A:ZK1901 2.2 59.9 1.0 CAS A:ZK1901 2.4 59.9 1.0 CAN A:ZK1901 2.9 59.9 1.0 CAR A:ZK1901 3.0 59.9 1.0 NAX A:ZK1901 3.1 59.9 1.0 CAJ A:ZK1901 3.4 59.9 1.0 OH A:TYR446 4.0 54.6 1.0 CAM A:ZK1901 4.2 59.9 1.0 CAI A:ZK1901 4.3 59.9 1.0 CAL A:ZK1901 4.3 59.9 1.0 CAV A:ZK1901 4.6 59.9 1.0 CZ A:TYR446 4.9 54.6 1.0 CAW A:ZK1901 5.0 59.9 1.0 SD A:MET704 5.0 58.5 1.0 CE A:MET704 5.0 58.5 1.0

Fluorine binding site 4 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.0 occ:1.00 FAF B:ZK1901 0.0 65.0 1.0 CAZ B:ZK1901 1.4 65.0 1.0 FAH B:ZK1901 2.2 65.0 1.0 FAG B:ZK1901 2.2 65.0 1.0 CAS B:ZK1901 2.3 65.0 1.0 CAJ B:ZK1901 2.7 65.0 1.0 OH B:TYR732 2.7 55.0 1.0 CZ B:TYR732 3.5 55.0 1.0 CAR B:ZK1901 3.6 65.0 1.0 CE1 B:TYR732 3.9 55.0 1.0 CAV B:ZK1901 4.1 65.0 1.0 OG1 B:THR707 4.2 65.0 1.0 NAX B:ZK1901 4.2 65.0 1.0 CB B:PRO478 4.3 61.8 1.0 CE2 B:TYR732 4.5 55.0 1.0 CG B:PRO478 4.5 61.8 1.0 CE B:MET708 4.6 67.5 1.0 CAI B:ZK1901 4.7 65.0 1.0 CE2 B:TYR405 4.7 79.6 1.0 CAM B:ZK1901 4.8 65.0 1.0 CAW B:ZK1901 4.9 65.0 1.0 NAP B:ZK1901 4.9 65.0 1.0 CAN B:ZK1901 4.9 65.0 1.0

Fluorine binding site 5 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.0 occ:1.00 FAG B:ZK1901 0.0 65.0 1.0 CAZ B:ZK1901 1.4 65.0 1.0 FAF B:ZK1901 2.2 65.0 1.0 FAH B:ZK1901 2.2 65.0 1.0 CAS B:ZK1901 2.4 65.0 1.0 NAX B:ZK1901 2.6 65.0 1.0 CAR B:ZK1901 2.8 65.0 1.0 CAM B:ZK1901 3.1 65.0 1.0 OAQ B:ZK1901 3.1 65.0 1.0 CAN B:ZK1901 3.2 65.0 1.0 CAL B:ZK1901 3.3 65.0 1.0 CE B:MET708 3.5 67.5 1.0 CAK B:ZK1901 3.6 65.0 1.0 CAJ B:ZK1901 3.6 65.0 1.0 CAI B:ZK1901 4.2 65.0 1.0 CB B:MET708 4.3 67.5 1.0 OH B:TYR732 4.4 55.0 1.0 CG B:MET708 4.5 67.5 1.0 CG B:GLU705 4.5 60.1 1.0 CB B:GLU705 4.7 60.1 1.0 SD B:MET708 4.7 67.5 1.0 CAV B:ZK1901 4.8 65.0 1.0 OG1 B:THR707 4.8 65.0 1.0 OE1 B:GLU402 5.0 80.4 1.0

Fluorine binding site 6 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:F901 b:65.0 occ:1.00 FAH B:ZK1901 0.0 65.0 1.0 CAZ B:ZK1901 1.4 65.0 1.0 FAF B:ZK1901 2.2 65.0 1.0 FAG B:ZK1901 2.2 65.0 1.0 CAS B:ZK1901 2.4 65.0 1.0 CAJ B:ZK1901 3.1 65.0 1.0 CAR B:ZK1901 3.3 65.0 1.0 CG B:GLU402 3.4 80.4 1.0 CD B:GLU402 3.7 80.4 1.0 NAX B:ZK1901 3.7 65.0 1.0 CAN B:ZK1901 3.7 65.0 1.0 OH B:TYR450 3.9 71.2 1.0 OE1 B:GLU402 4.0 80.4 1.0 CE B:MET708 4.1 67.5 1.0 OE2 B:GLU402 4.2 80.4 1.0 CB B:GLU402 4.2 80.4 1.0 CAL B:ZK1901 4.2 65.0 1.0 CAV B:ZK1901 4.4 65.0 1.0 CG B:PRO478 4.4 61.8 1.0 CAI B:ZK1901 4.5 65.0 1.0 OAQ B:ZK1901 4.6 65.0 1.0 CAM B:ZK1901 4.7 65.0 1.0 OH B:TYR732 4.9 55.0 1.0 CB B:PRO478 4.9 61.8 1.0 CZ B:TYR450 4.9 71.2 1.0 CAW B:ZK1901 4.9 65.0 1.0

Fluorine binding site 7 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:58.7 occ:1.00 FAF C:ZK1901 0.0 58.7 1.0 CAZ C:ZK1901 1.4 58.7 1.0 FAG C:ZK1901 2.2 58.7 1.0 FAH C:ZK1901 2.2 58.7 1.0 CAS C:ZK1901 2.3 58.7 1.0 CAJ C:ZK1901 2.6 58.7 1.0 CE2 C:TYR401 3.6 47.8 1.0 CAR C:ZK1901 3.6 58.7 1.0 OH C:TYR446 3.7 54.2 1.0 CG C:PRO474 3.8 36.5 1.0 CAV C:ZK1901 4.0 58.7 1.0 OD1 C:ASP399 4.1 53.0 1.0 CD2 C:TYR401 4.1 47.8 1.0 CB C:PRO474 4.2 36.5 1.0 NAX C:ZK1901 4.3 58.7 1.0 CG C:ASP399 4.4 53.0 1.0 OH C:TYR728 4.4 32.8 1.0 CZ C:TYR401 4.4 47.8 1.0 OH C:TYR401 4.6 47.8 1.0 CZ C:TYR446 4.7 54.2 1.0 CAN C:ZK1901 4.7 58.7 1.0 CAI C:ZK1901 4.7 58.7 1.0 OD2 C:ASP399 4.8 53.0 1.0 CE1 C:TYR446 4.8 54.2 1.0 NAP C:ZK1901 4.8 58.7 1.0 CB C:ASP399 4.8 53.0 1.0 CAW C:ZK1901 4.9 58.7 1.0

Fluorine binding site 8 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:58.7 occ:1.00 FAG C:ZK1901 0.0 58.7 1.0 CAZ C:ZK1901 1.4 58.7 1.0 FAF C:ZK1901 2.2 58.7 1.0 FAH C:ZK1901 2.2 58.7 1.0 CAS C:ZK1901 2.3 58.7 1.0 NAX C:ZK1901 2.9 58.7 1.0 CAR C:ZK1901 2.9 58.7 1.0 CAM C:ZK1901 3.2 58.7 1.0 CAJ C:ZK1901 3.4 58.7 1.0 CAN C:ZK1901 3.6 58.7 1.0 CAI C:ZK1901 4.2 58.7 1.0 SD C:MET704 4.3 58.2 1.0 CB C:MET704 4.4 58.2 1.0 OH C:TYR728 4.5 32.8 1.0 OG1 C:THR703 4.5 54.0 1.0 CG C:MET704 4.6 58.2 1.0 CAV C:ZK1901 4.6 58.7 1.0 CAK C:ZK1901 4.6 58.7 1.0 CE2 C:TYR401 4.6 47.8 1.0 CAL C:ZK1901 4.8 58.7 1.0 OAQ C:ZK1901 4.9 58.7 1.0 CAW C:ZK1901 4.9 58.7 1.0 OH C:TYR401 5.0 47.8 1.0

Fluorine binding site 9 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:F901 b:58.7 occ:1.00 FAH C:ZK1901 0.0 58.7 1.0 CAZ C:ZK1901 1.4 58.7 1.0 FAF C:ZK1901 2.2 58.7 1.0 FAG C:ZK1901 2.2 58.7 1.0 CAS C:ZK1901 2.4 58.7 1.0 CAN C:ZK1901 2.9 58.7 1.0 CAR C:ZK1901 3.0 58.7 1.0 NAX C:ZK1901 3.0 58.7 1.0 CAJ C:ZK1901 3.4 58.7 1.0 OD2 C:ASP399 3.7 53.0 1.0 CG C:ASP399 3.9 53.0 1.0 OH C:TYR446 4.0 54.2 1.0 OD1 C:ASP399 4.0 53.0 1.0 CAM C:ZK1901 4.1 58.7 1.0 CAI C:ZK1901 4.3 58.7 1.0 CAL C:ZK1901 4.3 58.7 1.0 CAV C:ZK1901 4.6 58.7 1.0 CB C:ASP399 4.7 53.0 1.0 CE1 C:TYR446 4.9 54.2 1.0 CZ C:TYR446 4.9 54.2 1.0 CAW C:ZK1901 5.0 58.7 1.0

Fluorine binding site 10 out of 18 in the The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of The Composite Lbd-Tmd Structure Combined From All Hippocampal Ampar Subtypes at 3.25 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:F901 b:63.6 occ:1.00 FAF D:ZK1901 0.0 63.6 1.0 CAZ D:ZK1901 1.4 63.6 1.0 FAG D:ZK1901 2.2 63.6 1.0 FAH D:ZK1901 2.2 63.6 1.0 CAS D:ZK1901 2.4 63.6 1.0 CAJ D:ZK1901 3.0 63.6 1.0 CAR D:ZK1901 3.4 63.6 1.0 CG D:GLU402 3.4 78.9 1.0 OH D:TYR450 3.4 70.3 1.0 NAX D:ZK1901 3.8 63.6 1.0 CAN D:ZK1901 3.9 63.6 1.0 CD D:GLU402 3.9 78.9 1.0 CG D:PRO478 4.0 61.9 1.0 CB D:GLU402 4.2 78.9 1.0 CZ D:TYR450 4.3 70.3 1.0 CAV D:ZK1901 4.3 63.6 1.0 OE2 D:GLU402 4.4 78.9 1.0 OE1 D:GLU402 4.4 78.9 1.0 CB D:PRO478 4.4 61.9 1.0 CAL D:ZK1901 4.5 63.6 1.0 CAI D:ZK1901 4.5 63.6 1.0 OH D:TYR732 4.6 53.8 1.0 CE D:MET708 4.7 67.2 1.0 CE2 D:TYR450 4.8 70.3 1.0 CAM D:ZK1901 4.8 63.6 1.0 CAW D:ZK1901 4.9 63.6 1.0 OAQ D:ZK1901 5.0 63.6 1.0

J.Yu, P.Rao, S.Clark, J.Mitra, T.Ha, E.Gouaux. Hippocampal Ampa Receptor Assemblies and Mechanism of Allosteric Inhibition Nature 2021.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-021-03540-0