Fluorine in PDB 7li5: Crystal Structure Analysis of Human TEAD1
Protein crystallography data
The structure of Crystal Structure Analysis of Human TEAD1, PDB code: 7li5
was solved by
H.-S.Seo,
S.Dhe-Paganon,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.29 /
1.68
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
36.56,
89.32,
135.02,
90,
90,
90
|
R / Rfree (%)
|
19.7 /
22.4
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Crystal Structure Analysis of Human TEAD1
(pdb code 7li5). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
Crystal Structure Analysis of Human TEAD1, PDB code: 7li5:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 1 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:49.3
occ:1.00
|
F1
|
A:Y2D501
|
0.0
|
49.3
|
1.0
|
C1
|
A:Y2D501
|
1.3
|
43.9
|
1.0
|
F2
|
A:Y2D501
|
2.1
|
40.0
|
1.0
|
F3
|
A:Y2D501
|
2.1
|
44.1
|
1.0
|
C2
|
A:Y2D501
|
2.4
|
26.8
|
1.0
|
H20
|
A:Y2D501
|
2.5
|
36.5
|
1.0
|
C22
|
A:Y2D501
|
2.8
|
30.4
|
1.0
|
CD2
|
A:LEU294
|
2.8
|
38.4
|
1.0
|
CB
|
A:ALA292
|
3.6
|
27.5
|
1.0
|
C3
|
A:Y2D501
|
3.6
|
28.7
|
1.0
|
CG
|
A:LEU294
|
3.7
|
39.3
|
1.0
|
H1
|
A:Y2D501
|
3.8
|
34.5
|
1.0
|
CD1
|
A:LEU294
|
4.0
|
43.4
|
1.0
|
C21
|
A:Y2D501
|
4.1
|
29.9
|
1.0
|
CG1
|
A:ILE366
|
4.4
|
27.7
|
1.0
|
CD1
|
A:PHE239
|
4.5
|
25.5
|
1.0
|
CD1
|
A:LEU369
|
4.6
|
31.3
|
1.0
|
CB
|
A:PHE239
|
4.7
|
20.9
|
1.0
|
C4
|
A:Y2D501
|
4.7
|
26.7
|
1.0
|
H19
|
A:Y2D501
|
4.7
|
35.9
|
1.0
|
CG
|
A:PHE239
|
4.8
|
26.4
|
1.0
|
C5
|
A:Y2D501
|
4.9
|
26.9
|
1.0
|
CA
|
A:ALA292
|
5.0
|
22.4
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 2 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:40.0
occ:1.00
|
F2
|
A:Y2D501
|
0.0
|
40.0
|
1.0
|
C1
|
A:Y2D501
|
1.3
|
43.9
|
1.0
|
F3
|
A:Y2D501
|
2.1
|
44.1
|
1.0
|
F1
|
A:Y2D501
|
2.1
|
49.3
|
1.0
|
C2
|
A:Y2D501
|
2.3
|
26.8
|
1.0
|
H1
|
A:Y2D501
|
2.5
|
34.5
|
1.0
|
C3
|
A:Y2D501
|
2.7
|
28.7
|
1.0
|
C22
|
A:Y2D501
|
3.6
|
30.4
|
1.0
|
CB
|
A:ALA292
|
3.6
|
27.5
|
1.0
|
H20
|
A:Y2D501
|
3.8
|
36.5
|
1.0
|
CD1
|
A:LEU369
|
3.9
|
31.3
|
1.0
|
CD2
|
A:LEU382
|
4.1
|
23.7
|
1.0
|
C4
|
A:Y2D501
|
4.1
|
26.7
|
1.0
|
CD1
|
A:LEU382
|
4.3
|
24.3
|
1.0
|
CD2
|
A:LEU294
|
4.6
|
38.4
|
1.0
|
CD2
|
A:PHE407
|
4.7
|
24.2
|
1.0
|
H2
|
A:Y2D501
|
4.7
|
32.0
|
1.0
|
C21
|
A:Y2D501
|
4.7
|
29.9
|
1.0
|
CG
|
A:LEU382
|
4.8
|
24.3
|
1.0
|
CD1
|
A:LEU294
|
4.9
|
43.4
|
1.0
|
CB
|
A:PHE407
|
4.9
|
23.7
|
1.0
|
C5
|
A:Y2D501
|
4.9
|
26.9
|
1.0
|
CG
|
A:LEU294
|
5.0
|
39.3
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 3 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:44.1
occ:1.00
|
F3
|
A:Y2D501
|
0.0
|
44.1
|
1.0
|
C1
|
A:Y2D501
|
1.3
|
43.9
|
1.0
|
F2
|
A:Y2D501
|
2.1
|
40.0
|
1.0
|
F1
|
A:Y2D501
|
2.1
|
49.3
|
1.0
|
C2
|
A:Y2D501
|
2.3
|
26.8
|
1.0
|
C22
|
A:Y2D501
|
3.1
|
30.4
|
1.0
|
H20
|
A:Y2D501
|
3.2
|
36.5
|
1.0
|
C3
|
A:Y2D501
|
3.2
|
28.7
|
1.0
|
CD1
|
A:LEU369
|
3.3
|
31.3
|
1.0
|
H1
|
A:Y2D501
|
3.3
|
34.5
|
1.0
|
CG1
|
A:ILE366
|
3.6
|
27.7
|
1.0
|
CD2
|
A:LEU294
|
4.2
|
38.4
|
1.0
|
CD2
|
A:PHE365
|
4.3
|
31.0
|
1.0
|
CA
|
A:ILE366
|
4.3
|
26.3
|
1.0
|
CE2
|
A:PHE365
|
4.4
|
33.8
|
1.0
|
C21
|
A:Y2D501
|
4.4
|
29.9
|
1.0
|
C4
|
A:Y2D501
|
4.4
|
26.7
|
1.0
|
CB
|
A:ILE366
|
4.5
|
25.4
|
1.0
|
CG
|
A:LEU369
|
4.6
|
30.1
|
1.0
|
CD1
|
A:ILE366
|
4.6
|
28.9
|
1.0
|
CD1
|
A:LEU294
|
4.7
|
43.4
|
1.0
|
N
|
A:ILE366
|
4.8
|
26.5
|
1.0
|
CE
|
A:MET362
|
4.8
|
29.9
|
1.0
|
CD2
|
A:LEU382
|
4.9
|
23.7
|
1.0
|
C5
|
A:Y2D501
|
4.9
|
26.9
|
1.0
|
CB
|
A:LEU369
|
4.9
|
32.7
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 4 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:39.2
occ:1.00
|
F1
|
B:Y2D501
|
0.0
|
39.2
|
1.0
|
C1
|
B:Y2D501
|
1.3
|
39.4
|
1.0
|
F3
|
B:Y2D501
|
2.1
|
37.8
|
1.0
|
F2
|
B:Y2D501
|
2.1
|
37.0
|
1.0
|
C2
|
B:Y2D501
|
2.3
|
28.5
|
1.0
|
H20
|
B:Y2D501
|
3.1
|
32.1
|
1.0
|
C22
|
B:Y2D501
|
3.1
|
26.8
|
1.0
|
CD1
|
B:LEU369
|
3.2
|
38.8
|
1.0
|
C3
|
B:Y2D501
|
3.3
|
27.8
|
1.0
|
H1
|
B:Y2D501
|
3.4
|
33.4
|
1.0
|
CG1
|
B:ILE366
|
3.5
|
28.2
|
1.0
|
CD2
|
B:LEU294
|
4.1
|
36.1
|
1.0
|
CE2
|
B:PHE365
|
4.2
|
30.9
|
1.0
|
CD2
|
B:PHE365
|
4.3
|
31.6
|
1.0
|
C21
|
B:Y2D501
|
4.3
|
26.1
|
1.0
|
CA
|
B:ILE366
|
4.5
|
30.2
|
1.0
|
CD1
|
B:LEU294
|
4.5
|
48.3
|
1.0
|
C4
|
B:Y2D501
|
4.5
|
30.1
|
1.0
|
CB
|
B:ILE366
|
4.5
|
29.1
|
1.0
|
CD1
|
B:ILE366
|
4.6
|
27.8
|
1.0
|
CG
|
B:LEU369
|
4.6
|
36.2
|
1.0
|
CG
|
B:LEU294
|
4.6
|
38.6
|
1.0
|
CD2
|
B:LEU382
|
4.7
|
27.0
|
1.0
|
C5
|
B:Y2D501
|
4.9
|
28.6
|
1.0
|
CB
|
B:LEU369
|
4.9
|
38.1
|
1.0
|
CG2
|
B:ILE366
|
5.0
|
31.2
|
1.0
|
CE
|
B:MET362
|
5.0
|
30.8
|
1.0
|
H19
|
B:Y2D501
|
5.0
|
31.4
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 5 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:37.0
occ:1.00
|
F2
|
B:Y2D501
|
0.0
|
37.0
|
1.0
|
C1
|
B:Y2D501
|
1.3
|
39.4
|
1.0
|
F3
|
B:Y2D501
|
2.1
|
37.8
|
1.0
|
F1
|
B:Y2D501
|
2.1
|
39.2
|
1.0
|
C2
|
B:Y2D501
|
2.3
|
28.5
|
1.0
|
H20
|
B:Y2D501
|
2.6
|
32.1
|
1.0
|
C22
|
B:Y2D501
|
2.8
|
26.8
|
1.0
|
CD2
|
B:LEU294
|
3.4
|
36.1
|
1.0
|
C3
|
B:Y2D501
|
3.5
|
27.8
|
1.0
|
CG
|
B:LEU294
|
3.6
|
38.6
|
1.0
|
CB
|
B:ALA292
|
3.6
|
28.4
|
1.0
|
CD1
|
B:PHE239
|
3.7
|
28.6
|
1.0
|
H1
|
B:Y2D501
|
3.8
|
33.4
|
1.0
|
CD1
|
B:LEU294
|
4.0
|
48.3
|
1.0
|
CB
|
B:PHE239
|
4.0
|
27.2
|
1.0
|
CG
|
B:PHE239
|
4.1
|
26.4
|
1.0
|
C21
|
B:Y2D501
|
4.2
|
26.1
|
1.0
|
CG1
|
B:ILE366
|
4.5
|
28.2
|
1.0
|
CE1
|
B:PHE239
|
4.6
|
29.1
|
1.0
|
C4
|
B:Y2D501
|
4.7
|
30.1
|
1.0
|
O
|
B:ASP293
|
4.7
|
35.6
|
1.0
|
CD1
|
B:LEU369
|
4.7
|
38.8
|
1.0
|
H19
|
B:Y2D501
|
4.8
|
31.4
|
1.0
|
C5
|
B:Y2D501
|
4.9
|
28.6
|
1.0
|
CA
|
B:ALA292
|
4.9
|
29.0
|
1.0
|
CA
|
B:PHE239
|
5.0
|
26.7
|
1.0
|
CB
|
B:LEU294
|
5.0
|
35.2
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 7li5
Go back to
Fluorine Binding Sites List in 7li5
Fluorine binding site 6 out
of 6 in the Crystal Structure Analysis of Human TEAD1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Crystal Structure Analysis of Human TEAD1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:37.8
occ:1.00
|
F3
|
B:Y2D501
|
0.0
|
37.8
|
1.0
|
C1
|
B:Y2D501
|
1.3
|
39.4
|
1.0
|
F1
|
B:Y2D501
|
2.1
|
39.2
|
1.0
|
F2
|
B:Y2D501
|
2.1
|
37.0
|
1.0
|
C2
|
B:Y2D501
|
2.4
|
28.5
|
1.0
|
H1
|
B:Y2D501
|
2.4
|
33.4
|
1.0
|
C3
|
B:Y2D501
|
2.7
|
27.8
|
1.0
|
CB
|
B:ALA292
|
3.3
|
28.4
|
1.0
|
C22
|
B:Y2D501
|
3.6
|
26.8
|
1.0
|
CD2
|
B:LEU382
|
3.8
|
27.0
|
1.0
|
H20
|
B:Y2D501
|
3.9
|
32.1
|
1.0
|
CD1
|
B:LEU369
|
3.9
|
38.8
|
1.0
|
C4
|
B:Y2D501
|
4.1
|
30.1
|
1.0
|
CD1
|
B:LEU294
|
4.2
|
48.3
|
1.0
|
CD1
|
B:LEU382
|
4.3
|
35.6
|
1.0
|
CG
|
B:LEU294
|
4.5
|
38.6
|
1.0
|
CG
|
B:LEU382
|
4.6
|
34.5
|
1.0
|
H2
|
B:Y2D501
|
4.7
|
36.1
|
1.0
|
CD2
|
B:LEU294
|
4.7
|
36.1
|
1.0
|
C21
|
B:Y2D501
|
4.7
|
26.1
|
1.0
|
CA
|
B:ALA292
|
4.9
|
29.0
|
1.0
|
C5
|
B:Y2D501
|
5.0
|
28.6
|
1.0
|
CE2
|
B:PHE365
|
5.0
|
30.9
|
1.0
|
CD2
|
B:PHE407
|
5.0
|
22.6
|
1.0
|
|
Reference:
H.-S.Seo,
S.Dhe-Paganon.
Crystal Structure Analysis of Human TEAD1 To Be Published.
Page generated: Fri Aug 2 08:54:12 2024
|