Fluorine in PDB 7lzd: Crystal Structure of SETD2 Bound to Compound 35

Enzymatic activity of Crystal Structure of SETD2 Bound to Compound 35

All present enzymatic activity of Crystal Structure of SETD2 Bound to Compound 35:
2.1.1.359;

Protein crystallography data

The structure of Crystal Structure of SETD2 Bound to Compound 35, PDB code: 7lzd was solved by N.A.Farrow, P.Boriack-Sjodin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.03 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.231, 76.381, 76.434, 90, 90, 90
R / Rfree (%) 19.3 / 21.8

Other elements in 7lzd:

The structure of Crystal Structure of SETD2 Bound to Compound 35 also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of SETD2 Bound to Compound 35 (pdb code 7lzd). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of SETD2 Bound to Compound 35, PDB code: 7lzd:

Fluorine binding site 1 out of 1 in 7lzd

Go back to Fluorine Binding Sites List in 7lzd
Fluorine binding site 1 out of 1 in the Crystal Structure of SETD2 Bound to Compound 35


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of SETD2 Bound to Compound 35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1805

b:31.1
occ:1.00
F28 A:YHY1805 0.0 31.1 1.0
C27 A:YHY1805 1.4 28.6 1.0
C21 A:YHY1805 2.4 27.4 1.0
C26 A:YHY1805 2.4 29.1 1.0
C20 A:YHY1805 3.1 27.0 1.0
C8 A:SAM1804 3.5 30.1 1.0
CD1 A:LEU1689 3.5 33.9 1.0
CB A:HIS1629 3.7 28.8 1.0
C22 A:YHY1805 3.7 26.8 1.0
N7 A:SAM1804 3.7 29.4 1.0
C25 A:YHY1805 3.7 27.8 1.0
C3' A:SAM1804 3.9 28.3 1.0
C5' A:SAM1804 4.0 28.6 1.0
N9 A:SAM1804 4.1 29.3 1.0
C23 A:YHY1805 4.2 27.5 1.0
CD2 A:LEU1689 4.2 32.6 1.0
CG A:LEU1689 4.2 32.9 1.0
CD2 A:TYR1666 4.2 27.5 1.0
N A:HIS1629 4.3 27.8 1.0
CB A:LEU1689 4.3 32.2 1.0
C19 A:YHY1805 4.3 26.6 1.0
C5 A:SAM1804 4.4 31.1 1.0
CG A:TYR1666 4.4 27.6 1.0
C4' A:SAM1804 4.4 29.1 1.0
CB A:TYR1666 4.5 29.2 1.0
CA A:HIS1629 4.6 29.7 1.0
N29 A:YHY1805 4.6 26.9 1.0
O3' A:SAM1804 4.7 27.5 1.0
C4 A:SAM1804 4.7 30.9 1.0
C2' A:SAM1804 4.7 27.7 1.0
CG A:HIS1629 4.7 28.8 1.0
O4' A:SAM1804 4.8 29.7 1.0
CE2 A:TYR1666 4.8 26.9 1.0
C1' A:SAM1804 4.8 29.3 1.0
O A:HOH1971 4.9 28.5 1.0

Reference:

J.W.Lampe, J.S.Alford, P.A.Boriak-Sjodin, D.Brach, K.Cosmopoulos, K.W.Duncan, S.T.Eckley, M.A.Foley, D.M.Harvey, V.Motwani, M.J.Munchhof, A.Raimondi, T.V.Riera, C.Tang, M.J.Thomenius, J.Totman, N.A.Farrow. Discovery of A First-in-Class Inhibitor of the Histone Methyltransferase SETD2 Suitable For Preclinical Studies Acs Med.Chem.Lett. 2021.
ISSN: ISSN 1948-5875
DOI: 10.1021/ACSMEDCHEMLETT.1C00272
Page generated: Fri Sep 24 13:28:13 2021

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