Fluorine in PDB 7m4v: A. Baumannii Ribosome-Eravacycline Complex: 50S

Other elements in 7m4v:

The structure of A. Baumannii Ribosome-Eravacycline Complex: 50S also contains other interesting chemical elements:

Magnesium (Mg) 159 atoms
Zinc (Zn) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the A. Baumannii Ribosome-Eravacycline Complex: 50S (pdb code 7m4v). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the A. Baumannii Ribosome-Eravacycline Complex: 50S, PDB code: 7m4v:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7m4v

Go back to Fluorine Binding Sites List in 7m4v
Fluorine binding site 1 out of 2 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3201

b:0.0
occ:1.00
F40 A:YQM3201 0.0 0.0 1.0
C10 A:YQM3201 1.3 0.0 1.0
C11 A:YQM3201 2.3 0.0 1.0
C09 A:YQM3201 2.4 0.0 1.0
C08 A:YQM3201 3.0 0.0 1.0
N1 A:A1131 3.6 0.0 1.0
O29 A:YQM3202 3.6 0.0 1.0
C14 A:YQM3201 3.7 0.0 1.0
C12 A:YQM3201 3.7 0.0 1.0
O30 A:YQM3202 3.9 0.0 1.0
C2 A:A1131 4.0 0.0 1.0
C13 A:YQM3201 4.1 0.0 1.0
C15 A:YQM3202 4.3 0.0 1.0
C07 A:YQM3201 4.4 0.0 1.0
C13 A:YQM3202 4.5 0.0 1.0
MG A:MG3302 4.6 0.0 1.0
C14 A:YQM3202 4.6 0.0 1.0
C6 A:A1131 4.7 0.0 1.0
N31 A:YQM3201 4.9 0.0 1.0
C15 A:YQM3201 4.9 0.0 1.0
N6 A:A1131 5.0 0.0 1.0
N3 A:G1023 5.0 0.0 1.0

Fluorine binding site 2 out of 2 in 7m4v

Go back to Fluorine Binding Sites List in 7m4v
Fluorine binding site 2 out of 2 in the A. Baumannii Ribosome-Eravacycline Complex: 50S


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of A. Baumannii Ribosome-Eravacycline Complex: 50S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F3202

b:0.0
occ:1.00
F40 A:YQM3202 0.0 0.0 1.0
C10 A:YQM3202 1.3 0.0 1.0
C11 A:YQM3202 2.3 0.0 1.0
C09 A:YQM3202 2.4 0.0 1.0
C08 A:YQM3202 3.0 0.0 1.0
O29 A:YQM3201 3.5 0.0 1.0
C14 A:YQM3202 3.7 0.0 1.0
C12 A:YQM3202 3.7 0.0 1.0
C13 A:YQM3202 4.1 0.0 1.0
O30 A:YQM3201 4.2 0.0 1.0
MG A:MG3301 4.2 0.0 1.0
C15 A:YQM3201 4.3 0.0 1.0
C07 A:YQM3202 4.4 0.0 1.0
C14 A:YQM3201 4.7 0.0 1.0
C13 A:YQM3201 4.7 0.0 1.0
N31 A:YQM3202 4.8 0.0 1.0
C15 A:YQM3202 4.9 0.0 1.0

Reference:

Z.Zhang, C.E.Morgan, R.A.Bonomo, E.W.Yu. Cryo-Em Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump Adej of Acinetobacter Baumannii To Be Published.
Page generated: Sat Jul 10 14:24:09 2021

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