Fluorine in PDB 7mge: Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1

Other elements in 7mge:

The structure of Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1 (pdb code 7mge). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1, PDB code: 7mge:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7mge

Go back to Fluorine Binding Sites List in 7mge
Fluorine binding site 1 out of 3 in the Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F201

b:130.9
occ:1.00
 F1 E:BEF201 0.0 130.9 1.0
BE E:BEF201 1.5 130.9 1.0
O E:VAL68 2.1 133.4 1.0
OG1 E:THR48 2.3 123.5 1.0
F3 E:BEF201 2.5 130.9 1.0
F2 E:BEF201 2.6 130.9 1.0
OD1 E:ASP67 2.8 136.1 1.0
CE E:LYS30 3.1 139.8 1.0
OD2 E:ASP67 3.2 136.1 1.0
C E:VAL68 3.3 133.4 1.0
OG1 E:THR31 3.3 143.5 1.0
CG E:ASP67 3.4 136.1 1.0
NZ E:LYS30 3.4 139.8 1.0
MG E:MG202 3.6 140.0 1.0
CB E:THR48 3.7 123.5 1.0
CA E:GLY69 3.9 141.0 1.0
O1B E:GDP200 4.0 146.3 1.0
N E:GLY69 4.0 141.0 1.0
O2B E:GDP200 4.1 146.3 1.0
N E:THR48 4.3 123.5 1.0
N E:VAL68 4.3 133.4 1.0
CG2 E:THR48 4.3 123.5 1.0
CA E:VAL68 4.4 133.4 1.0
CD E:LYS30 4.5 139.8 1.0
O E:THR48 4.5 123.5 1.0
CA E:THR48 4.5 123.5 1.0
CG E:LYS30 4.6 139.8 1.0
PB E:GDP200 4.7 146.3 1.0
CB E:THR31 4.7 143.5 1.0
CB E:ASP67 4.9 136.1 1.0
C E:THR48 4.9 123.5 1.0
C E:ASP67 4.9 136.1 1.0
C E:GLY69 5.0 141.0 1.0

Fluorine binding site 2 out of 3 in 7mge

Go back to Fluorine Binding Sites List in 7mge
Fluorine binding site 2 out of 3 in the Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F201

b:130.9
occ:1.00
 F2 E:BEF201 0.0 130.9 1.0
BE E:BEF201 1.6 130.9 1.0
MG E:MG202 1.9 140.0 1.0
OG1 E:THR31 2.1 143.5 1.0
O1B E:GDP200 2.3 146.3 1.0
F3 E:BEF201 2.5 130.9 1.0
F1 E:BEF201 2.6 130.9 1.0
PB E:GDP200 3.2 146.3 1.0
O2A E:GDP200 3.2 146.3 1.0
CB E:THR31 3.3 143.5 1.0
O3A E:GDP200 3.3 146.3 1.0
O2B E:GDP200 3.5 146.3 1.0
OG1 E:THR48 3.6 123.5 1.0
PA E:GDP200 3.6 146.3 1.0
NZ E:LYS30 3.7 139.8 1.0
O1A E:GDP200 3.8 146.3 1.0
OD1 E:ASP67 4.1 136.1 1.0
N E:THR48 4.2 123.5 1.0
N E:THR31 4.2 143.5 1.0
CE E:LYS30 4.2 139.8 1.0
CG2 E:THR31 4.2 143.5 1.0
CA E:THR31 4.3 143.5 1.0
OD2 E:ASP67 4.5 136.1 1.0
O3B E:GDP200 4.5 146.3 1.0
CG2 E:THR48 4.5 123.5 1.0
CB E:THR48 4.6 123.5 1.0
CG E:LYS30 4.6 139.8 1.0
O E:VAL68 4.7 133.4 1.0
CA E:PRO47 4.7 117.4 1.0
CG E:ASP67 4.7 136.1 1.0
C E:PRO47 5.0 117.4 1.0
O E:ILE46 5.0 127.5 1.0

Fluorine binding site 3 out of 3 in 7mge

Go back to Fluorine Binding Sites List in 7mge
Fluorine binding site 3 out of 3 in the Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of C9ORF72:SMCR8:WDR41 in Complex with ARF1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F201

b:130.9
occ:1.00
 F3 E:BEF201 0.0 130.9 1.0
BE E:BEF201 1.5 130.9 1.0
MG E:MG202 1.8 140.0 1.0
NZ E:LYS30 2.2 139.8 1.0
O2B E:GDP200 2.4 146.3 1.0
F2 E:BEF201 2.5 130.9 1.0
F1 E:BEF201 2.5 130.9 1.0
CE E:LYS30 3.1 139.8 1.0
PB E:GDP200 3.2 146.3 1.0
O1B E:GDP200 3.3 146.3 1.0
O3A E:GDP200 3.4 146.3 1.0
O E:VAL68 4.0 133.4 1.0
OG1 E:THR48 4.2 123.5 1.0
OG1 E:THR31 4.3 143.5 1.0
N E:GLY70 4.4 144.4 1.0
CD E:LYS30 4.4 139.8 1.0
CA E:GLY69 4.5 141.0 1.0
PA E:GDP200 4.5 146.3 1.0
CG E:LYS30 4.6 139.8 1.0
O3B E:GDP200 4.6 146.3 1.0
O1A E:GDP200 4.7 146.3 1.0
OE1 E:GLN71 4.7 138.5 1.0
N E:THR48 4.8 123.5 1.0
O2A E:GDP200 4.8 146.3 1.0
OD1 E:ASP67 4.9 136.1 1.0
C E:GLY69 4.9 141.0 1.0
N E:ALA27 4.9 144.9 1.0
O E:LEU25 5.0 150.9 1.0
C E:VAL68 5.0 133.4 1.0

Reference:

M.-Y.Su, S.A.Fromm, J.H.Hurley. Structural Basis For the Arf Gap Activity and Specificity of the C9ORF72 Complex To Be Published.
Page generated: Sat Jul 10 14:23:40 2021

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