Fluorine in PDB 7mx0: The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558

Protein crystallography data

The structure of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558, PDB code: 7mx0 was solved by M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.40 / 2.48
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 89.631, 89.631, 133.93, 90, 90, 90
R / Rfree (%) 20.9 / 25.7

Other elements in 7mx0:

The structure of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558 also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558 (pdb code 7mx0). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 2 binding sites of Fluorine where determined in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558, PDB code: 7mx0:
Jump to Fluorine binding site number: 1; 2;

Fluorine binding site 1 out of 2 in 7mx0

Go back to Fluorine Binding Sites List in 7mx0
Fluorine binding site 1 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:104.9
occ:1.00
F21 A:WTD203 0.0 104.9 1.0
C20 A:WTD203 1.4 106.3 1.0
C19 A:WTD203 2.4 98.9 1.0
C22 A:WTD203 2.4 101.3 1.0
C17 A:WTD203 2.8 85.9 1.0
N16 A:WTD203 3.4 72.5 1.0
N18 A:WTD203 3.6 87.7 1.0
C23 A:WTD203 3.6 106.4 1.0
C25 A:WTD203 3.6 94.6 1.0
CD1 A:ILE38 3.7 91.3 1.0
O A:HOH301 4.1 66.0 1.0
C24 A:WTD203 4.1 105.0 1.0
O A:ALA37 4.3 69.5 1.0
CB A:HIS41 4.4 47.5 1.0
C A:ALA37 4.4 62.0 1.0
CA A:ILE38 4.5 51.3 1.0
C14 A:WTD203 4.5 65.5 1.0
N A:ILE38 4.5 63.7 1.0
CB A:ALA37 4.5 58.1 1.0
C11 A:WTD203 4.7 83.8 1.0
CG A:HIS41 4.7 53.0 1.0
CG1 A:ILE38 4.7 63.7 1.0
F26 A:WTD203 4.8 84.0 1.0
C07 A:WTD203 4.9 93.1 1.0
O A:HOH309 5.0 68.3 1.0

Fluorine binding site 2 out of 2 in 7mx0

Go back to Fluorine Binding Sites List in 7mx0
Fluorine binding site 2 out of 2 in the The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F203

b:84.0
occ:1.00
F26 A:WTD203 0.0 84.0 1.0
C25 A:WTD203 1.4 94.6 1.0
C19 A:WTD203 2.4 98.9 1.0
C24 A:WTD203 2.4 105.0 1.0
C17 A:WTD203 2.8 85.9 1.0
N18 A:WTD203 3.4 87.7 1.0
N16 A:WTD203 3.6 72.5 1.0
C23 A:WTD203 3.6 106.4 1.0
C20 A:WTD203 3.6 106.3 1.0
C22 A:WTD203 4.1 101.3 1.0
C11 A:WTD203 4.5 83.8 1.0
O02 A:WTD203 4.5 112.3 1.0
C14 A:WTD203 4.7 65.5 1.0
F21 A:WTD203 4.8 104.9 1.0
OH A:TYR130 5.0 91.7 1.0

Reference:

M.G.Cuypers, J.P.Slavish, Z.Rankovic, S.W.White. The Crystal Structure of Wild Type Pa Endonuclease (2009/H1N1/California) in Complex with SJ000988558 To Be Published.
Page generated: Wed Apr 5 00:20:19 2023

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