Fluorine in PDB 7nkx: Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
Enzymatic activity of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
All present enzymatic activity of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure:
2.7.7.6;
Other elements in 7nkx:
The structure of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
(pdb code 7nkx). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure, PDB code: 7nkx:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7nkx
Go back to
Fluorine Binding Sites List in 7nkx
Fluorine binding site 1 out
of 3 in the Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:F1502
b:104.1
occ:1.00
|
F1
|
W:BEF1502
|
0.0
|
104.1
|
1.0
|
BE
|
W:BEF1502
|
1.5
|
104.1
|
1.0
|
O2B
|
W:ADP1501
|
2.2
|
97.8
|
1.0
|
NH1
|
W:ARG804
|
2.3
|
101.3
|
1.0
|
NH2
|
W:ARG804
|
2.4
|
101.3
|
1.0
|
F3
|
W:BEF1502
|
2.5
|
104.1
|
1.0
|
NH1
|
W:ARG807
|
2.5
|
99.4
|
1.0
|
F2
|
W:BEF1502
|
2.6
|
104.1
|
1.0
|
CZ
|
W:ARG804
|
2.6
|
101.3
|
1.0
|
O2A
|
W:ADP1501
|
3.0
|
97.8
|
1.0
|
CZ
|
W:ARG807
|
3.3
|
99.4
|
1.0
|
NE
|
W:ARG807
|
3.4
|
99.4
|
1.0
|
PB
|
W:ADP1501
|
3.7
|
97.8
|
1.0
|
CA
|
W:GLY777
|
3.8
|
100.0
|
1.0
|
C
|
W:GLY777
|
3.8
|
100.0
|
1.0
|
NE
|
W:ARG804
|
3.9
|
101.3
|
1.0
|
O
|
W:GLY777
|
3.9
|
100.0
|
1.0
|
O
|
W:ILE778
|
3.9
|
99.0
|
1.0
|
O
|
W:LEU776
|
4.0
|
101.8
|
1.0
|
PA
|
W:ADP1501
|
4.3
|
97.8
|
1.0
|
O3A
|
W:ADP1501
|
4.3
|
97.8
|
1.0
|
O3B
|
W:ADP1501
|
4.4
|
97.8
|
1.0
|
NH2
|
W:ARG807
|
4.4
|
99.4
|
1.0
|
N
|
W:ILE778
|
4.4
|
99.0
|
1.0
|
N
|
W:GLY777
|
4.6
|
100.0
|
1.0
|
N
|
W:GLY404
|
4.6
|
101.5
|
1.0
|
C
|
W:ILE778
|
4.7
|
99.0
|
1.0
|
O1B
|
W:ADP1501
|
4.7
|
97.8
|
1.0
|
C
|
W:LEU776
|
4.7
|
101.8
|
1.0
|
OE1
|
W:GLN800
|
4.7
|
103.8
|
1.0
|
CB
|
W:MET403
|
4.7
|
102.4
|
1.0
|
CD
|
W:ARG807
|
4.7
|
99.4
|
1.0
|
OE1
|
W:GLU514
|
4.7
|
101.3
|
1.0
|
CD
|
W:ARG804
|
4.8
|
101.3
|
1.0
|
C5'
|
W:ADP1501
|
4.9
|
97.8
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7nkx
Go back to
Fluorine Binding Sites List in 7nkx
Fluorine binding site 2 out
of 3 in the Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:F1502
b:104.1
occ:1.00
|
F2
|
W:BEF1502
|
0.0
|
104.1
|
1.0
|
BE
|
W:BEF1502
|
1.6
|
104.1
|
1.0
|
O
|
W:LEU776
|
2.1
|
101.8
|
1.0
|
OE1
|
W:GLU514
|
2.3
|
101.3
|
1.0
|
NH2
|
W:ARG804
|
2.4
|
101.3
|
1.0
|
F3
|
W:BEF1502
|
2.5
|
104.1
|
1.0
|
F1
|
W:BEF1502
|
2.6
|
104.1
|
1.0
|
CZ
|
W:ARG804
|
3.1
|
101.3
|
1.0
|
NH1
|
W:ARG804
|
3.1
|
101.3
|
1.0
|
C
|
W:LEU776
|
3.2
|
101.8
|
1.0
|
OE1
|
W:GLN800
|
3.3
|
103.8
|
1.0
|
CD
|
W:GLU514
|
3.3
|
101.3
|
1.0
|
O2B
|
W:ADP1501
|
3.4
|
97.8
|
1.0
|
NE2
|
W:GLN800
|
3.4
|
103.8
|
1.0
|
CA
|
W:GLY777
|
3.4
|
100.0
|
1.0
|
CD
|
W:GLN800
|
3.7
|
103.8
|
1.0
|
N
|
W:GLY777
|
3.7
|
100.0
|
1.0
|
OE2
|
W:GLU514
|
4.1
|
101.3
|
1.0
|
CB
|
W:MET403
|
4.1
|
102.4
|
1.0
|
CG
|
W:GLU514
|
4.2
|
101.3
|
1.0
|
NE
|
W:ARG804
|
4.3
|
101.3
|
1.0
|
C
|
W:GLY777
|
4.4
|
100.0
|
1.0
|
CA
|
W:LEU776
|
4.5
|
101.8
|
1.0
|
PB
|
W:ADP1501
|
4.7
|
97.8
|
1.0
|
O
|
W:GLY777
|
4.8
|
100.0
|
1.0
|
O2A
|
W:ADP1501
|
4.8
|
97.8
|
1.0
|
CA
|
W:MET403
|
4.9
|
102.4
|
1.0
|
O1B
|
W:ADP1501
|
4.9
|
97.8
|
1.0
|
NH1
|
W:ARG807
|
5.0
|
99.4
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7nkx
Go back to
Fluorine Binding Sites List in 7nkx
Fluorine binding site 3 out
of 3 in the Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Rna Polymerase II-SPT4/5-Nucleosome-CHD1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
W:F1502
b:104.1
occ:1.00
|
F3
|
W:BEF1502
|
0.0
|
104.1
|
1.0
|
BE
|
W:BEF1502
|
1.5
|
104.1
|
1.0
|
F2
|
W:BEF1502
|
2.5
|
104.1
|
1.0
|
F1
|
W:BEF1502
|
2.5
|
104.1
|
1.0
|
NH2
|
W:ARG804
|
2.9
|
101.3
|
1.0
|
O2B
|
W:ADP1501
|
3.0
|
97.8
|
1.0
|
O2A
|
W:ADP1501
|
3.0
|
97.8
|
1.0
|
CA
|
W:MET403
|
3.1
|
102.4
|
1.0
|
CB
|
W:MET403
|
3.1
|
102.4
|
1.0
|
N
|
W:GLY404
|
3.2
|
101.5
|
1.0
|
C
|
W:MET403
|
3.5
|
102.4
|
1.0
|
CD
|
W:LYS407
|
3.9
|
102.1
|
1.0
|
OE1
|
W:GLU514
|
3.9
|
101.3
|
1.0
|
O3A
|
W:ADP1501
|
3.9
|
97.8
|
1.0
|
PA
|
W:ADP1501
|
3.9
|
97.8
|
1.0
|
CZ
|
W:ARG804
|
4.0
|
101.3
|
1.0
|
PB
|
W:ADP1501
|
4.1
|
97.8
|
1.0
|
NZ
|
W:LYS407
|
4.2
|
102.1
|
1.0
|
CA
|
W:GLY404
|
4.3
|
101.5
|
1.0
|
NH1
|
W:ARG804
|
4.3
|
101.3
|
1.0
|
CE
|
W:LYS407
|
4.4
|
102.1
|
1.0
|
N
|
W:MET403
|
4.4
|
102.4
|
1.0
|
O1A
|
W:ADP1501
|
4.4
|
97.8
|
1.0
|
CG
|
W:LYS407
|
4.4
|
102.1
|
1.0
|
O
|
W:LEU776
|
4.6
|
101.8
|
1.0
|
NE
|
W:ARG807
|
4.6
|
99.4
|
1.0
|
O
|
W:MET403
|
4.6
|
102.4
|
1.0
|
OE1
|
W:GLN800
|
4.6
|
103.8
|
1.0
|
NH1
|
W:ARG807
|
4.6
|
99.4
|
1.0
|
NE2
|
W:GLN800
|
4.7
|
103.8
|
1.0
|
O1B
|
W:ADP1501
|
4.8
|
97.8
|
1.0
|
CZ
|
W:ARG807
|
5.0
|
99.4
|
1.0
|
|
Reference:
L.Farnung,
M.Ochmann,
M.Engeholm,
P.Cramer.
Structural Basis of Nucleosome Transcription Mediated By CHD1 and Fact. Nat.Struct.Mol.Biol. V. 28 382 2021.
ISSN: ESSN 1545-9985
PubMed: 33846633
DOI: 10.1038/S41594-021-00578-6
Page generated: Fri Aug 2 10:07:20 2024
|