Fluorine in PDB 7nvm: Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound

Other elements in 7nvm:

The structure of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound also contains other interesting chemical elements:

Aluminium (Al) 16 atoms
Magnesium (Mg) 16 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Fluorine atom in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound (pdb code 7nvm). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 48 binding sites of Fluorine where determined in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound, PDB code: 7nvm:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 48 in 7nvm

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Fluorine binding site 1 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:58.2
occ:1.00
 F1 A:AF3603 0.0 58.2 1.0
AL A:AF3603 1.6 55.7 1.0
MG A:MG602 2.5 78.9 1.0
O2B A:ADP601 2.6 194.1 1.0
F3 A:AF3603 2.8 62.6 1.0
F2 A:AF3603 2.8 47.6 1.0
NZ A:LYS159 2.8 68.3 1.0
O3B A:ADP601 2.8 161.5 1.0
OD1 A:ASP88 3.0 67.8 1.0
PB A:ADP601 3.0 189.6 1.0
O3A A:ADP601 3.1 202.8 1.0
OD2 A:ASP394 3.3 69.1 1.0
CE A:LYS159 3.3 68.3 1.0
PA A:ADP601 4.1 210.3 1.0
O2A A:ADP601 4.1 200.0 1.0
CG A:ASP88 4.2 67.8 1.0
CG A:ASP394 4.3 69.1 1.0
OD1 A:ASP57 4.5 68.4 1.0
O1A A:ADP601 4.5 177.2 1.0
OG1 A:THR90 4.5 66.3 1.0
O1B A:ADP601 4.5 179.6 1.0
O A:HOH701 4.7 30.0 1.0
N A:GLY89 4.8 66.4 1.0
CD A:LYS159 4.8 68.3 1.0
OD2 A:ASP88 4.9 67.8 1.0
OG1 A:THR91 4.9 65.9 1.0
CB A:ASP394 5.0 69.1 1.0

Fluorine binding site 2 out of 48 in 7nvm

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Fluorine binding site 2 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:47.6
occ:1.00
 F2 A:AF3603 0.0 47.6 1.0
AL A:AF3603 1.6 55.7 1.0
OG1 A:THR90 2.2 66.3 1.0
F3 A:AF3603 2.8 62.6 1.0
F1 A:AF3603 2.8 58.2 1.0
CB A:THR90 3.2 66.3 1.0
O A:HOH702 3.3 30.0 1.0
O3B A:ADP601 3.3 161.5 1.0
CG2 A:THR90 3.4 66.3 1.0
OD1 A:ASP57 3.4 68.4 1.0
N A:THR90 3.4 66.3 1.0
OD2 A:ASP394 3.6 69.1 1.0
OD1 A:ASP88 3.8 67.8 1.0
CA A:THR90 3.9 66.3 1.0
N A:GLY89 4.0 66.4 1.0
O2B A:ADP601 4.0 194.1 1.0
CA A:ASP88 4.1 67.8 1.0
CG A:ASP57 4.1 68.4 1.0
CG A:ASP394 4.2 69.1 1.0
PB A:ADP601 4.2 189.6 1.0
OD1 A:ASP394 4.3 69.1 1.0
C A:ASP88 4.4 67.8 1.0
O A:GLY87 4.5 67.9 1.0
OD2 A:ASP57 4.5 68.4 1.0
C A:GLY89 4.5 66.4 1.0
N A:THR91 4.6 65.9 1.0
N A:GLY58 4.6 66.7 1.0
MG A:MG602 4.6 78.9 1.0
NZ A:LYS159 4.7 68.3 1.0
C A:THR90 4.7 66.3 1.0
N A:ASP88 4.8 67.8 1.0
CA A:GLY89 4.8 66.4 1.0
CG A:ASP88 4.8 67.8 1.0
OD1 A:ASP83 4.8 68.2 1.0
OG1 A:THR91 4.9 65.9 1.0
CA A:ASP57 4.9 68.4 1.0
C A:GLY87 4.9 67.9 1.0

Fluorine binding site 3 out of 48 in 7nvm

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Fluorine binding site 3 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F603

b:62.6
occ:1.00
 F3 A:AF3603 0.0 62.6 1.0
AL A:AF3603 1.6 55.7 1.0
O2B A:ADP601 2.5 194.1 1.0
OG1 A:THR91 2.7 65.9 1.0
N A:GLY58 2.8 66.7 1.0
F2 A:AF3603 2.8 47.6 1.0
F1 A:AF3603 2.8 58.2 1.0
OG1 A:THR90 3.0 66.3 1.0
O A:HOH701 3.2 30.0 1.0
CA A:ASP57 3.5 68.4 1.0
O A:ASN56 3.5 68.3 1.0
C A:ASP57 3.6 68.4 1.0
NZ A:LYS159 3.7 68.3 1.0
PB A:ADP601 3.7 189.6 1.0
CA A:GLY58 3.8 66.7 1.0
O3B A:ADP601 3.8 161.5 1.0
CB A:THR91 3.9 65.9 1.0
N A:THR91 4.0 65.9 1.0
OD1 A:ASP57 4.1 68.4 1.0
C A:ASN56 4.3 68.3 1.0
N A:ASP57 4.3 68.4 1.0
CG A:ASP57 4.3 68.4 1.0
CB A:THR90 4.4 66.3 1.0
CB A:ASP57 4.5 68.4 1.0
CA A:THR91 4.6 65.9 1.0
OD1 A:ASN56 4.7 68.3 1.0
C A:THR90 4.7 66.3 1.0
O3A A:ADP601 4.7 202.8 1.0
N A:THR90 4.8 66.3 1.0
N A:ALA59 4.8 67.4 1.0
O1B A:ADP601 4.8 179.6 1.0
O A:ASP57 4.8 68.4 1.0
OD2 A:ASP394 4.8 69.1 1.0
CA A:THR90 4.8 66.3 1.0
C A:GLY58 4.9 66.7 1.0
CE A:LYS159 4.9 68.3 1.0
OD2 A:ASP57 5.0 68.4 1.0

Fluorine binding site 4 out of 48 in 7nvm

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Fluorine binding site 4 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:58.2
occ:1.00
 F1 B:AF3603 0.0 58.2 1.0
AL B:AF3603 1.6 55.7 1.0
MG B:MG602 2.0 78.9 1.0
OD1 B:ASP97 2.7 68.1 1.0
F2 B:AF3603 2.8 47.6 1.0
F3 B:AF3603 2.8 62.6 1.0
OD2 B:ASP392 2.9 69.5 1.0
O2B B:ADP601 3.0 179.6 1.0
NZ B:LYS170 3.1 68.5 1.0
O1A B:ADP601 3.1 177.2 1.0
CE B:LYS170 3.2 68.5 1.0
O1B B:ADP601 3.2 194.1 1.0
PB B:ADP601 3.7 189.6 1.0
CG B:ASP97 3.8 68.1 1.0
OD1 B:ASP66 3.9 68.6 1.0
CG B:ASP392 3.9 69.5 1.0
PA B:ADP601 4.0 210.3 1.0
O3A B:ADP601 4.3 202.8 1.0
O2A B:ADP601 4.4 200.0 1.0
CA B:ASP97 4.5 68.1 1.0
OD2 B:ASP97 4.5 68.1 1.0
O B:GLY96 4.5 68.7 1.0
CB B:ASP97 4.6 68.1 1.0
CD B:LYS170 4.7 68.5 1.0
CB B:ASP392 4.7 69.5 1.0
OD1 B:ASP392 4.7 69.5 1.0
N B:GLY98 4.8 66.7 1.0
OG1 B:THR99 4.8 66.7 1.0

Fluorine binding site 5 out of 48 in 7nvm

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Fluorine binding site 5 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:47.6
occ:1.00
 F2 B:AF3603 0.0 47.6 1.0
AL B:AF3603 1.6 55.7 1.0
OG1 B:THR99 2.4 66.7 1.0
O2B B:ADP601 2.8 179.6 1.0
F3 B:AF3603 2.8 62.6 1.0
F1 B:AF3603 2.8 58.2 1.0
N B:THR99 2.9 66.7 1.0
O1B B:ADP601 3.0 194.1 1.0
CB B:THR99 3.1 66.7 1.0
CG2 B:THR99 3.1 66.7 1.0
PB B:ADP601 3.2 189.6 1.0
N B:GLY98 3.3 66.7 1.0
CA B:THR99 3.5 66.7 1.0
CA B:ASP97 3.7 68.1 1.0
C B:ASP97 3.8 68.1 1.0
C B:GLY98 3.9 66.7 1.0
O3B B:ADP601 3.9 161.5 1.0
OD1 B:ASP66 3.9 68.6 1.0
N B:THR100 4.0 66.2 1.0
OD1 B:ASP97 4.0 68.1 1.0
CA B:GLY98 4.1 66.7 1.0
O B:GLY96 4.2 68.7 1.0
C B:THR99 4.2 66.7 1.0
OD2 B:ASP392 4.3 69.5 1.0
MG B:MG602 4.4 78.9 1.0
CG B:ASP97 4.4 68.1 1.0
N B:ASP97 4.6 68.1 1.0
OG1 B:THR100 4.6 66.2 1.0
CB B:ASP97 4.7 68.1 1.0
O3A B:ADP601 4.7 202.8 1.0
O B:ASP97 4.7 68.1 1.0
C B:GLY96 4.7 68.7 1.0
CG B:ASP66 4.8 68.6 1.0
O1A B:ADP601 4.8 177.2 1.0
CG B:ASP392 4.9 69.5 1.0
N B:GLY67 5.0 67.2 1.0

Fluorine binding site 6 out of 48 in 7nvm

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Fluorine binding site 6 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:62.6
occ:1.00
 F3 B:AF3603 0.0 62.6 1.0
AL B:AF3603 1.6 55.7 1.0
O2B B:ADP601 2.2 179.6 1.0
F2 B:AF3603 2.8 47.6 1.0
F1 B:AF3603 2.8 58.2 1.0
OG1 B:THR100 3.0 66.2 1.0
OG1 B:THR99 3.2 66.7 1.0
N B:GLY67 3.3 67.2 1.0
OD1 B:ASP66 3.3 68.6 1.0
O B:HOH702 3.3 30.0 1.0
CA B:ASP66 3.4 68.6 1.0
NZ B:LYS170 3.5 68.5 1.0
O B:ASN65 3.5 68.7 1.0
PB B:ADP601 3.6 189.6 1.0
C B:ASP66 3.8 68.6 1.0
CE B:LYS170 3.9 68.5 1.0
CG B:ASP66 3.9 68.6 1.0
CB B:THR100 4.2 66.2 1.0
O1B B:ADP601 4.2 194.1 1.0
CB B:ASP66 4.2 68.6 1.0
N B:ASP66 4.3 68.6 1.0
N B:THR100 4.3 66.2 1.0
C B:ASN65 4.3 68.7 1.0
O2A B:ADP601 4.4 200.0 1.0
CA B:GLY67 4.4 67.2 1.0
MG B:MG602 4.5 78.9 1.0
ND2 B:ASN65 4.5 68.7 1.0
OD2 B:ASP392 4.5 69.5 1.0
O3A B:ADP601 4.5 202.8 1.0
CB B:THR99 4.6 66.7 1.0
O3B B:ADP601 4.6 161.5 1.0
O1A B:ADP601 4.6 177.2 1.0
PA B:ADP601 4.6 210.3 1.0
OD2 B:ASP66 4.8 68.6 1.0
CA B:THR100 4.9 66.2 1.0
N B:THR99 4.9 66.7 1.0
C B:THR99 5.0 66.7 1.0

Fluorine binding site 7 out of 48 in 7nvm

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Fluorine binding site 7 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:58.2
occ:1.00
 F1 D:AF3603 0.0 58.2 1.0
AL D:AF3603 1.6 55.7 1.0
O3B D:ADP601 2.6 179.6 1.0
NZ D:LYS174 2.8 68.4 1.0
F3 D:AF3603 2.8 62.6 1.0
F2 D:AF3603 2.8 47.6 1.0
O D:ASN72 3.1 68.1 1.0
OD1 D:ASP73 3.2 69.2 1.0
CE D:LYS174 3.2 68.4 1.0
CA D:ASP73 3.3 69.2 1.0
C D:ASN72 3.8 68.1 1.0
CG D:ASP73 3.8 69.2 1.0
PB D:ADP601 3.9 189.6 1.0
N D:GLY74 3.9 68.1 1.0
N D:ASP73 4.0 69.2 1.0
OD2 D:ASP407 4.0 71.0 1.0
OG1 D:THR107 4.1 65.9 1.0
O2B D:ADP601 4.1 194.1 1.0
CB D:ASP73 4.1 69.2 1.0
C D:ASP73 4.2 69.2 1.0
MG D:MG602 4.3 78.9 1.0
O1A D:ADP601 4.3 177.2 1.0
OG1 D:THR106 4.4 67.4 1.0
ND2 D:ASN72 4.4 68.1 1.0
O2A D:ADP601 4.5 200.0 1.0
CD D:LYS174 4.5 68.4 1.0
PA D:ADP601 4.7 210.3 1.0
OD2 D:ASP73 4.8 69.2 1.0
O3A D:ADP601 4.8 202.8 1.0
OG D:SER173 4.8 67.7 1.0
O1B D:ADP601 5.0 161.5 1.0

Fluorine binding site 8 out of 48 in 7nvm

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Fluorine binding site 8 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:47.6
occ:1.00
 F2 D:AF3603 0.0 47.6 1.0
AL D:AF3603 1.6 55.7 1.0
MG D:MG602 1.9 78.9 1.0
O2B D:ADP601 2.3 194.1 1.0
F1 D:AF3603 2.8 58.2 1.0
O1A D:ADP601 2.8 177.2 1.0
F3 D:AF3603 2.8 62.6 1.0
OD1 D:ASP104 2.9 70.1 1.0
O3B D:ADP601 3.0 179.6 1.0
NZ D:LYS174 3.1 68.4 1.0
PB D:ADP601 3.1 189.6 1.0
OD2 D:ASP407 3.5 71.0 1.0
PA D:ADP601 3.8 210.3 1.0
O3A D:ADP601 3.8 202.8 1.0
CG D:ASP104 3.8 70.1 1.0
CE D:LYS174 4.1 68.4 1.0
N D:GLY105 4.2 67.8 1.0
CG D:ASP407 4.4 71.0 1.0
OD2 D:ASP104 4.4 70.1 1.0
O1B D:ADP601 4.5 161.5 1.0
O2A D:ADP601 4.5 200.0 1.0
CA D:ASP104 4.6 70.1 1.0
OD1 D:ASP73 4.7 69.2 1.0
CB D:ASP104 4.8 70.1 1.0
C D:ASP104 4.9 70.1 1.0

Fluorine binding site 9 out of 48 in 7nvm

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Fluorine binding site 9 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:62.6
occ:1.00
 F3 D:AF3603 0.0 62.6 1.0
AL D:AF3603 1.6 55.7 1.0
OG1 D:THR106 2.5 67.4 1.0
O3B D:ADP601 2.8 179.6 1.0
F1 D:AF3603 2.8 58.2 1.0
F2 D:AF3603 2.8 47.6 1.0
O2B D:ADP601 2.9 194.1 1.0
OD1 D:ASP73 3.0 69.2 1.0
N D:THR106 3.1 67.4 1.0
PB D:ADP601 3.1 189.6 1.0
CB D:THR106 3.4 67.4 1.0
N D:GLY105 3.6 67.8 1.0
CG2 D:THR106 3.6 67.4 1.0
O1B D:ADP601 3.7 161.5 1.0
CA D:THR106 3.7 67.4 1.0
N D:THR107 3.9 65.9 1.0
C D:GLY105 4.0 67.8 1.0
CG D:ASP73 4.2 69.2 1.0
OD2 D:ASP407 4.2 71.0 1.0
C D:THR106 4.2 67.4 1.0
CA D:GLY105 4.2 67.8 1.0
OD1 D:ASP104 4.3 70.1 1.0
OG1 D:THR107 4.3 65.9 1.0
N D:GLY74 4.3 68.1 1.0
CA D:ASP104 4.4 70.1 1.0
C D:ASP104 4.4 70.1 1.0
O D:HOH701 4.5 30.0 1.0
O3A D:ADP601 4.6 202.8 1.0
MG D:MG602 4.7 78.9 1.0
CA D:ASP73 4.8 69.2 1.0
OD2 D:ASP73 4.9 69.2 1.0
CB D:THR107 4.9 65.9 1.0
NZ D:LYS174 4.9 68.4 1.0
CG D:ASP407 5.0 71.0 1.0

Fluorine binding site 10 out of 48 in 7nvm

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Fluorine binding site 10 out of 48 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F603

b:58.2
occ:1.00
 F1 E:AF3603 0.0 58.2 1.0
AL E:AF3603 1.6 55.7 1.0
NZ E:LYS176 2.3 69.3 1.0
F3 E:AF3603 2.8 62.6 1.0
F2 E:AF3603 2.8 47.6 1.0
CE E:LYS176 3.0 69.3 1.0
O3A E:ADP601 3.3 202.8 1.0
MG E:MG602 3.3 78.9 1.0
O3B E:ADP601 3.4 194.1 1.0
OD1 E:ASP73 3.4 68.9 1.0
OD2 E:ASP404 3.4 69.8 1.0
OD1 E:ASP104 3.8 68.7 1.0
PB E:ADP601 3.9 189.6 1.0
OD1 E:ASN72 4.1 68.9 1.0
PA E:ADP601 4.2 210.3 1.0
CA E:ASP73 4.2 68.9 1.0
O1A E:ADP601 4.3 200.0 1.0
O2A E:ADP601 4.4 177.2 1.0
O E:ASN72 4.4 68.9 1.0
O2B E:ADP601 4.4 179.6 1.0
CG E:ASP73 4.4 68.9 1.0
CD E:LYS176 4.5 69.3 1.0
OG1 E:THR106 4.6 67.5 1.0
CG E:ASP404 4.6 69.8 1.0
OG E:SER175 4.6 69.5 1.0
CB E:ASP73 4.7 68.9 1.0
C E:ASN72 4.7 68.9 1.0
N E:ASP73 4.8 68.9 1.0

Reference:

J.J.Kelly, D.Tranter, E.Pardon, G.Chi, H.Kramer, L.Happonen, K.M.Knee, J.M.Janz, J.Steyaert, C.Bulawa, V.O.Paavilainen, J.T.Huiskonen, W.W.Yue. Snapshots of Actin and Tubulin Folding Inside the Tric Chaperonin. Nat.Struct.Mol.Biol. V. 29 420 2022.
ISSN: ESSN 1545-9985
PubMed: 35449234
DOI: 10.1038/S41594-022-00755-1
Page generated: Fri Aug 2 10:13:30 2024

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