Atomistry » Fluorine » PDB 7nr5-7o4j » 7o4i
Atomistry »
  Fluorine »
    PDB 7nr5-7o4j »
      7o4i »

Fluorine in PDB 7o4i: Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble

Enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble

All present enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble:
2.7.7.6; 3.6.4.12;

Other elements in 7o4i:

The structure of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble also contains other interesting chemical elements:

Zinc (Zn) 17 atoms
Iron (Fe) 4 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble (pdb code 7o4i). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble, PDB code: 7o4i:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7o4i

Go back to Fluorine Binding Sites List in 7o4i
Fluorine binding site 1 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:201.8
occ:1.00
F1 7:BEF901 0.0 201.8 1.0
BE 7:BEF901 1.5 201.8 1.0
MG 7:MG902 2.0 172.6 1.0
F3 7:BEF901 2.6 201.8 1.0
F2 7:BEF901 2.6 201.8 1.0
O1B 7:ADP903 2.7 201.2 1.0
O3B 7:ADP903 2.9 201.2 1.0
PB 7:ADP903 3.3 201.2 1.0
CA 7:SER661 3.4 203.7 1.0
N 7:SER661 4.0 203.7 1.0
CB 7:SER661 4.1 203.7 1.0
OE2 7:GLU489 4.1 205.8 1.0
OG 7:SER661 4.2 203.7 1.0
C 7:SER661 4.2 203.7 1.0
O2B 7:ADP903 4.3 201.2 1.0
O3A 7:ADP903 4.6 201.2 1.0
CE 7:LYS392 4.7 201.8 1.0
NH2 7:ARG692 4.7 199.6 1.0
O1A 7:ADP903 4.7 201.2 1.0
N 7:ILE662 4.8 202.6 1.0
NZ 7:LYS392 4.8 201.8 1.0
OD2 7:ASP488 4.8 206.3 1.0
O 7:SER661 4.9 203.7 1.0
NH2 7:ARG689 4.9 203.3 1.0
NH1 7:ARG692 4.9 199.6 1.0
NH1 7:ARG689 4.9 203.3 1.0

Fluorine binding site 2 out of 3 in 7o4i

Go back to Fluorine Binding Sites List in 7o4i
Fluorine binding site 2 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:201.8
occ:1.00
F2 7:BEF901 0.0 201.8 1.0
BE 7:BEF901 1.6 201.8 1.0
F3 7:BEF901 2.6 201.8 1.0
F1 7:BEF901 2.6 201.8 1.0
O1B 7:ADP903 2.7 201.2 1.0
NZ 7:LYS392 3.1 201.8 1.0
SG 7:CYS388 3.4 202.1 1.0
CA 7:CYS388 3.4 202.1 1.0
CB 7:CYS388 3.4 202.1 1.0
PB 7:ADP903 3.5 201.2 1.0
CE 7:LYS392 3.5 201.8 1.0
O2B 7:ADP903 3.6 201.2 1.0
N 7:GLY389 4.0 201.7 1.0
O3B 7:ADP903 4.0 201.2 1.0
NH2 7:ARG689 4.0 203.3 1.0
MG 7:MG902 4.1 172.6 1.0
NH2 7:ARG692 4.2 199.6 1.0
C 7:CYS388 4.2 202.1 1.0
OE2 7:GLU489 4.2 205.8 1.0
N 7:CYS388 4.6 202.1 1.0
OE1 7:GLN685 4.9 204.6 1.0
OG1 7:THR660 4.9 204.8 1.0
CB 7:ALA515 5.0 202.2 1.0
O3A 7:ADP903 5.0 201.2 1.0
N 7:SER661 5.0 203.7 1.0

Fluorine binding site 3 out of 3 in 7o4i

Go back to Fluorine Binding Sites List in 7o4i
Fluorine binding site 3 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Initial Transcription Bubble within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:201.8
occ:1.00
F3 7:BEF901 0.0 201.8 1.0
BE 7:BEF901 1.5 201.8 1.0
F2 7:BEF901 2.6 201.8 1.0
O1B 7:ADP903 2.6 201.2 1.0
NH2 7:ARG692 2.6 199.6 1.0
F1 7:BEF901 2.6 201.8 1.0
NH2 7:ARG689 2.6 203.3 1.0
NH1 7:ARG689 2.9 203.3 1.0
CZ 7:ARG689 3.1 203.3 1.0
CZ 7:ARG692 3.4 199.6 1.0
NH1 7:ARG692 3.6 199.6 1.0
N 7:SER661 3.8 203.7 1.0
CA 7:SER661 4.0 203.7 1.0
PB 7:ADP903 4.0 201.2 1.0
CB 7:CYS388 4.1 202.1 1.0
N 7:GLY389 4.2 201.7 1.0
O 7:ILE662 4.3 202.6 1.0
N 7:ILE662 4.3 202.6 1.0
MG 7:MG902 4.4 172.6 1.0
NE 7:ARG689 4.5 203.3 1.0
C 7:SER661 4.5 203.7 1.0
CA 7:CYS388 4.5 202.1 1.0
O3B 7:ADP903 4.6 201.2 1.0
NE 7:ARG692 4.6 199.6 1.0
SG 7:CYS388 4.6 202.1 1.0
C 7:CYS388 4.7 202.1 1.0
O2B 7:ADP903 4.9 201.2 1.0
C 7:ILE662 4.9 202.6 1.0
O3A 7:ADP903 5.0 201.2 1.0
CA 7:GLY389 5.0 201.7 1.0
C 7:THR660 5.0 204.8 1.0

Reference:

S.Schilbach, S.Aibara, C.Dienemann, F.Grabbe, P.Cramer. Structure of Rna Polymerase II Pre-Initiation Complex at 2.9 Angstrom Defines Initial Dna Opening Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.05.012
Page generated: Fri Aug 2 10:39:48 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy