Fluorine in PDB 7o73: Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna

Enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna

All present enzymatic activity of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna:
2.7.7.6; 3.6.4.12;

Other elements in 7o73:

The structure of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Magnesium (Mg) 2 atoms
Zinc (Zn) 17 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna (pdb code 7o73). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna, PDB code: 7o73:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7o73

Go back to Fluorine Binding Sites List in 7o73
Fluorine binding site 1 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:199.2
occ:1.00
F1 7:BEF901 0.0 199.2 1.0
BE 7:BEF901 1.5 199.2 1.0
MG 7:MG902 2.0 154.7 1.0
OE2 7:GLU489 2.3 200.2 1.0
F3 7:BEF901 2.6 199.2 1.0
F2 7:BEF901 2.6 199.2 1.0
O1B 7:ADP903 2.7 199.4 1.0
O3B 7:ADP903 2.9 199.4 1.0
PB 7:ADP903 3.3 199.4 1.0
CD 7:GLU489 3.4 200.2 1.0
OE1 7:GLU489 4.0 200.2 1.0
OG1 7:THR660 4.2 202.6 1.0
CA 7:SER661 4.2 202.4 1.0
O2B 7:ADP903 4.2 199.4 1.0
CE 7:LYS392 4.3 197.2 1.0
N 7:SER661 4.4 202.4 1.0
NZ 7:LYS392 4.4 197.2 1.0
O3A 7:ADP903 4.6 199.4 1.0
CG 7:GLU489 4.6 200.2 1.0
CB 7:SER661 4.6 202.4 1.0
NH2 7:ARG692 4.8 197.4 1.0
O1A 7:ADP903 4.8 199.4 1.0
OG 7:SER661 4.9 202.4 1.0
OE1 7:GLN685 4.9 202.7 1.0
NH2 7:ARG689 5.0 200.2 1.0

Fluorine binding site 2 out of 3 in 7o73

Go back to Fluorine Binding Sites List in 7o73
Fluorine binding site 2 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:199.2
occ:1.00
F2 7:BEF901 0.0 199.2 1.0
BE 7:BEF901 1.6 199.2 1.0
F3 7:BEF901 2.6 199.2 1.0
F1 7:BEF901 2.6 199.2 1.0
O1B 7:ADP903 2.7 199.4 1.0
NZ 7:LYS392 2.8 197.2 1.0
SG 7:CYS388 3.3 198.1 1.0
CE 7:LYS392 3.4 197.2 1.0
CA 7:CYS388 3.4 198.1 1.0
PB 7:ADP903 3.6 199.4 1.0
CB 7:CYS388 3.6 198.1 1.0
O2B 7:ADP903 3.7 199.4 1.0
N 7:GLY389 3.9 194.4 1.0
OE2 7:GLU489 4.0 200.2 1.0
O3B 7:ADP903 4.1 199.4 1.0
CB 7:ALA515 4.1 197.9 1.0
C 7:CYS388 4.2 198.1 1.0
OE1 7:GLN685 4.3 202.7 1.0
NH2 7:ARG692 4.3 197.4 1.0
MG 7:MG902 4.3 154.7 1.0
N 7:CYS388 4.4 198.1 1.0
NE2 7:GLN685 4.5 202.7 1.0
OE1 7:GLU489 4.6 200.2 1.0
OG1 7:THR660 4.7 202.6 1.0
CD 7:GLU489 4.7 200.2 1.0
CD 7:GLN685 4.8 202.7 1.0
CD 7:LYS392 4.8 197.2 1.0
NH2 7:ARG689 4.8 200.2 1.0
N 7:ALA515 4.9 197.9 1.0
O 7:PRO387 4.9 196.0 1.0

Fluorine binding site 3 out of 3 in 7o73

Go back to Fluorine Binding Sites List in 7o73
Fluorine binding site 3 out of 3 in the Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Yeast Rna Polymerase II Transcription Pre-Initiation Complex with Closed Distorted Promoter Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
7:F901

b:199.2
occ:1.00
F3 7:BEF901 0.0 199.2 1.0
BE 7:BEF901 1.5 199.2 1.0
NH2 7:ARG689 2.5 200.2 1.0
F2 7:BEF901 2.6 199.2 1.0
O1B 7:ADP903 2.6 199.4 1.0
F1 7:BEF901 2.6 199.2 1.0
NH2 7:ARG692 2.6 197.4 1.0
CZ 7:ARG692 3.6 197.4 1.0
CZ 7:ARG689 3.7 200.2 1.0
OG1 7:THR660 3.8 202.6 1.0
NH1 7:ARG692 3.9 197.4 1.0
N 7:SER661 3.9 202.4 1.0
PB 7:ADP903 4.0 199.4 1.0
N 7:GLY389 4.2 194.4 1.0
NH1 7:ARG689 4.2 200.2 1.0
MG 7:MG902 4.2 154.7 1.0
OE2 7:GLU489 4.3 200.2 1.0
CB 7:CYS388 4.3 198.1 1.0
CA 7:SER661 4.4 202.4 1.0
OE1 7:GLN685 4.4 202.7 1.0
SG 7:CYS388 4.5 198.1 1.0
O3B 7:ADP903 4.5 199.4 1.0
CA 7:CYS388 4.6 198.1 1.0
C 7:CYS388 4.8 198.1 1.0
NE 7:ARG689 4.8 200.2 1.0
NE 7:ARG692 4.8 197.4 1.0
O2B 7:ADP903 4.9 199.4 1.0
O3A 7:ADP903 4.9 199.4 1.0
C 7:THR660 4.9 202.6 1.0
CB 7:THR660 4.9 202.6 1.0
CA 7:THR660 5.0 202.6 1.0
CA 7:GLY389 5.0 194.4 1.0

Reference:

S.Schilbach, S.Aibara, C.Dienemann, F.Grabbe, P.Cramer. Structure of Rna Polymerase II Pre-Initiation Complex at 2.9 Angstrom Defines Initial Dna Opening Cell(Cambridge,Mass.) 2021.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2021.05.012
Page generated: Fri Aug 2 10:41:24 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy