Fluorine in PDB 7od9: Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef

Protein crystallography data

The structure of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef, PDB code: 7od9 was solved by F.Altegoer, P.Weiland, G.Bange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.07 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.29, 70.87, 59.82, 90, 91.6, 90
R / Rfree (%) 25 / 30.7

Other elements in 7od9:

The structure of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef (pdb code 7od9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef, PDB code: 7od9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 1 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:43.9
occ:1.00
 F1 B:BEF202 0.0 43.9 1.0
BE B:BEF202 1.5 54.4 1.0
MG B:MG201 2.0 50.5 0.9
OD2 B:ASP57 2.3 51.1 1.0
O F:HOH404 2.5 36.8 1.0
F3 B:BEF202 2.5 38.0 1.0
F2 B:BEF202 2.6 49.5 1.0
OD1 B:ASP57 2.6 50.5 1.0
CG B:ASP57 2.8 41.3 1.0
O B:VAL59 2.8 42.8 1.0
O B:HOH325 3.1 51.5 1.0
CB B:VAL59 3.5 56.8 1.0
N B:VAL59 3.6 42.9 1.0
C B:VAL59 3.7 54.0 1.0
CA B:VAL59 3.8 55.0 1.0
OD1 B:ASP12 3.8 61.5 1.0
O F:PHE348 3.9 56.5 1.0
NZ B:LYS107 4.2 43.8 1.0
CB B:ASP57 4.3 42.2 1.0
CG1 B:VAL59 4.4 49.4 1.0
N B:ILE58 4.5 50.3 1.0
CG2 B:VAL59 4.5 52.4 1.0
C B:ILE58 4.7 48.8 1.0
CG B:ASP12 4.7 52.6 1.0
OD2 B:ASP12 4.8 49.7 1.0
OD2 B:ASP11 4.8 51.5 1.0
OD1 B:ASP11 4.9 52.2 1.0
OG1 B:THR85 4.9 52.4 1.0
CG B:MET60 4.9 63.7 1.0
N B:MET60 4.9 46.8 1.0
C F:PHE348 5.0 56.5 1.0
OG B:SER86 5.0 59.6 1.0

Fluorine binding site 2 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 2 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:49.5
occ:1.00
 F2 B:BEF202 0.0 49.5 1.0
BE B:BEF202 1.6 54.4 1.0
OD1 B:ASP57 2.4 50.5 1.0
F3 B:BEF202 2.5 38.0 1.0
F1 B:BEF202 2.6 43.9 1.0
NZ B:LYS107 2.8 43.8 1.0
N B:SER86 2.9 56.5 1.0
CA B:THR85 3.4 55.1 1.0
CE B:LYS107 3.4 46.2 1.0
CG B:ASP57 3.4 41.3 1.0
OG B:SER86 3.5 59.6 1.0
OG1 B:THR85 3.5 52.4 1.0
C B:THR85 3.6 54.7 1.0
O F:HOH404 3.6 36.8 1.0
CB B:SER86 3.7 58.1 1.0
CD B:LYS107 3.8 47.0 1.0
OD2 B:ASP57 3.9 51.1 1.0
CA B:SER86 3.9 57.5 1.0
O F:PHE348 3.9 56.5 1.0
CB B:THR85 4.0 46.1 1.0
MG B:MG201 4.3 50.5 0.9
O B:CYS84 4.3 41.1 1.0
N B:THR85 4.6 55.8 1.0
C F:PHE348 4.6 56.5 1.0
CG B:LYS107 4.7 55.9 1.0
CB B:ASP57 4.7 42.2 1.0
O B:THR85 4.7 51.8 1.0
OD1 B:ASP11 4.7 52.2 1.0
C B:SER86 4.9 61.1 1.0
N B:VAL87 4.9 59.5 1.0
N B:ILE58 4.9 50.3 1.0
C B:CYS84 4.9 46.8 1.0

Fluorine binding site 3 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 3 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F202

b:38.0
occ:1.00
 F3 B:BEF202 0.0 38.0 1.0
BE B:BEF202 1.5 54.4 1.0
OD1 B:ASP57 2.2 50.5 1.0
F2 B:BEF202 2.5 49.5 1.0
F1 B:BEF202 2.5 43.9 1.0
OG1 B:THR85 2.6 52.4 1.0
N B:VAL59 2.7 42.9 1.0
N B:ILE58 2.9 50.3 1.0
CG B:ASP57 3.0 41.3 1.0
OD2 B:ASP57 3.3 51.1 1.0
CB B:THR85 3.3 46.1 1.0
CA B:ILE58 3.5 52.8 1.0
C B:ILE58 3.6 48.8 1.0
CB B:ILE58 3.6 42.4 1.0
CB B:VAL59 3.7 56.8 1.0
CA B:VAL59 3.7 55.0 1.0
CA B:THR85 3.8 55.1 1.0
CG2 B:VAL59 4.0 52.4 1.0
C B:ASP57 4.0 49.2 1.0
N B:SER86 4.0 56.5 1.0
CB B:ASP57 4.2 42.2 1.0
O B:VAL59 4.2 42.8 1.0
MG B:MG201 4.2 50.5 0.9
CA B:ASP57 4.2 47.9 1.0
CG2 B:ILE58 4.4 50.2 1.0
C B:VAL59 4.4 54.0 1.0
C B:THR85 4.5 54.7 1.0
CG1 B:VAL87 4.5 62.3 1.0
O F:HOH404 4.7 36.8 1.0
CG2 B:THR85 4.7 50.5 1.0
O B:ILE58 4.7 47.7 1.0
O B:CYS84 4.8 41.1 1.0
CG1 B:ILE58 4.8 46.1 1.0
NZ B:LYS107 4.8 43.8 1.0
OG B:SER86 4.8 59.6 1.0
N B:VAL87 4.9 59.5 1.0

Fluorine binding site 4 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 4 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:73.0
occ:1.00
 F1 A:BEF202 0.0 73.0 1.0
BE A:BEF202 1.5 75.2 1.0
OD1 A:ASP57 2.2 80.9 1.0
F3 A:BEF202 2.5 69.1 1.0
F2 A:BEF202 2.6 88.2 1.0
CG A:ASP57 3.0 81.5 1.0
N A:VAL59 3.1 79.8 1.0
OD2 A:ASP57 3.1 72.5 1.0
OG1 A:THR85 3.2 67.3 1.0
CB A:VAL59 3.2 83.7 1.0
MG A:MG201 3.4 80.2 1.0
CA A:VAL59 3.6 84.6 1.0
O A:VAL59 3.6 94.1 1.0
N A:ILE58 3.8 75.3 1.0
CG2 A:VAL59 3.9 56.3 1.0
C A:ILE58 4.0 71.1 1.0
C A:VAL59 4.1 90.0 1.0
OG A:SER86 4.1 77.2 1.0
CB A:THR85 4.1 64.8 1.0
CA A:ILE58 4.3 68.2 1.0
N A:SER86 4.3 63.6 1.0
CB A:ASP57 4.4 70.6 1.0
CG1 A:VAL59 4.4 74.6 1.0
CA A:THR85 4.5 70.6 1.0
CG2 A:VAL87 4.5 65.5 1.0
O A:HOH309 4.6 81.1 1.0
CB A:ILE58 4.7 81.7 1.0
C A:ASP57 4.7 68.9 1.0
CA A:ASP57 4.7 68.8 1.0
CD1 A:ILE58 4.8 76.3 1.0
O A:HOH304 4.9 103.6 1.0

Fluorine binding site 5 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 5 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:88.2
occ:1.00
 F2 A:BEF202 0.0 88.2 1.0
BE A:BEF202 1.6 75.2 1.0
MG A:MG201 2.0 80.2 1.0
O A:HOH309 2.2 81.1 1.0
OD2 A:ASP57 2.4 72.5 1.0
F3 A:BEF202 2.5 69.1 1.0
F1 A:BEF202 2.6 73.0 1.0
OD1 A:ASP57 3.1 80.9 1.0
CG A:ASP57 3.1 81.5 1.0
C C:PHE348 3.5 83.8 1.0
O C:PHE348 3.5 82.3 1.0
O A:VAL59 3.7 94.1 1.0
OD1 A:ASP12 3.8 92.0 1.0
O A:HOH304 3.9 103.6 1.0
NZ A:LYS107 4.1 70.2 1.0
OG A:SER86 4.3 77.2 1.0
OD1 A:ASP11 4.5 76.2 1.0
CB A:VAL59 4.5 83.7 1.0
CB A:ASP57 4.5 70.6 1.0
OD2 A:ASP11 4.6 77.8 1.0
CG A:ASP12 4.6 94.7 1.0
OD2 A:ASP12 4.6 94.7 1.0
C A:VAL59 4.7 90.0 1.0
CG A:ASP11 4.9 77.9 1.0
CG1 A:VAL59 4.9 74.6 1.0
N A:VAL59 5.0 79.8 1.0
CA C:PHE348 5.0 85.4 1.0
CA A:VAL59 5.0 84.6 1.0

Fluorine binding site 6 out of 6 in 7od9

Go back to Fluorine Binding Sites List in 7od9
Fluorine binding site 6 out of 6 in the Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of Activated Chey Fused to the C-Terminal Domain of Chef within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F202

b:69.1
occ:1.00
 F3 A:BEF202 0.0 69.1 1.0
BE A:BEF202 1.5 75.2 1.0
F2 A:BEF202 2.5 88.2 1.0
F1 A:BEF202 2.5 73.0 1.0
N A:SER86 2.7 63.6 1.0
OD1 A:ASP57 2.9 80.9 1.0
OG A:SER86 2.9 77.2 1.0
CA A:THR85 3.2 70.6 1.0
OG1 A:THR85 3.3 67.3 1.0
NZ A:LYS107 3.4 70.2 1.0
C A:THR85 3.4 70.6 1.0
CB A:SER86 3.6 71.9 1.0
CE A:LYS107 3.6 75.9 1.0
CD A:LYS107 3.7 65.2 1.0
CA A:SER86 3.7 72.6 1.0
CG A:ASP57 3.7 81.5 1.0
CB A:THR85 3.7 64.8 1.0
OD2 A:ASP57 3.9 72.5 1.0
O C:PHE348 4.0 82.3 1.0
CG A:LYS107 4.1 70.1 1.0
O A:HOH309 4.4 81.1 1.0
MG A:MG201 4.4 80.2 1.0
C C:PHE348 4.4 83.8 1.0
N A:THR85 4.4 62.7 1.0
O A:CYS84 4.5 60.3 1.0
O A:THR85 4.6 68.0 1.0
N A:VAL87 4.6 70.5 1.0
C A:SER86 4.7 72.0 1.0
C A:CYS84 4.9 61.3 1.0

Reference:

F.Altegoer, T.E.F.Quax, P.Weiland, P.Nussbaum, P.I.Giammarinaro, M.Patro, Z.Li, D.Oesterhelt, M.Grininger, S.V.Albers, G.Bange. Structural Insights Into the Mechanism of Archaellar Rotational Switching. Nat Commun V. 13 2857 2022.
ISSN: ESSN 2041-1723
PubMed: 35606361
DOI: 10.1038/S41467-022-30358-9
Page generated: Wed Apr 5 00:30:36 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy