Fluorine in PDB 7oh6: Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State

Enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State

All present enzymatic activity of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State:
7.6.2.1;

Other elements in 7oh6:

The structure of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State (pdb code 7oh6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State, PDB code: 7oh6:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7oh6

Go back to Fluorine Binding Sites List in 7oh6
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1502

b:90.0
occ:1.00
F1 A:ALF1502 0.0 90.0 1.0
AL A:ALF1502 1.8 90.0 1.0
OG1 A:THR562 2.5 88.5 1.0
F4 A:ALF1502 2.5 90.0 1.0
OD1 A:ASP560 2.5 85.8 1.0
F3 A:ALF1502 2.5 90.0 1.0
OE2 A:GLU342 3.0 103.3 1.0
N A:THR562 3.1 88.5 1.0
OD1 A:ASP837 3.1 94.0 1.0
OG1 A:THR835 3.2 87.9 1.0
F2 A:ALF1502 3.6 90.0 1.0
CG A:ASP560 3.6 85.8 1.0
CB A:THR562 3.6 88.5 1.0
N A:LYS561 3.7 86.4 1.0
CB A:LYS561 3.8 86.4 1.0
CD A:GLU342 3.9 103.3 1.0
CA A:THR562 3.9 88.5 1.0
OE1 A:GLU342 3.9 103.3 1.0
C A:LYS561 3.9 86.4 1.0
CA A:LYS561 4.0 86.4 1.0
OD2 A:ASP560 4.0 85.8 1.0
MG A:MG1503 4.1 88.6 1.0
O A:THR562 4.1 88.5 1.0
CG2 A:THR562 4.2 88.5 1.0
CB A:THR835 4.2 87.9 1.0
CG A:ASP837 4.3 94.0 1.0
N A:GLY836 4.4 88.1 1.0
C A:THR562 4.5 88.5 1.0
NZ A:LYS561 4.7 86.4 1.0
CA A:THR835 4.7 87.9 1.0
C A:ASP560 4.7 85.8 1.0
OD2 A:ASP837 4.7 94.0 1.0
CE A:LYS561 4.7 86.4 1.0
CA A:GLY341 4.8 102.9 1.0
CG A:LYS561 4.8 86.4 1.0
CB A:ASP560 4.9 85.8 1.0
O A:HOH1601 4.9 90.5 1.0
C A:GLY341 5.0 102.9 1.0
O A:GLY341 5.0 102.9 1.0

Fluorine binding site 2 out of 4 in 7oh6

Go back to Fluorine Binding Sites List in 7oh6
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1502

b:90.0
occ:1.00
F2 A:ALF1502 0.0 90.0 1.0
AL A:ALF1502 1.8 90.0 1.0
O A:HOH1601 2.4 90.5 1.0
OD1 A:ASP560 2.4 85.8 1.0
F4 A:ALF1502 2.5 90.0 1.0
F3 A:ALF1502 2.6 90.0 1.0
ND2 A:ASN957 2.7 93.4 1.0
CG A:ASP560 2.8 85.8 1.0
NZ A:LYS934 3.0 87.1 1.0
OD2 A:ASP560 3.2 85.8 1.0
MG A:MG1503 3.3 88.6 1.0
OD1 A:ASN957 3.4 93.4 1.0
CG A:ASN957 3.5 93.4 1.0
F1 A:ALF1502 3.6 90.0 1.0
CB A:ASP560 3.8 85.8 1.0
CA A:GLY341 3.8 102.9 1.0
O A:HOH1602 4.4 88.7 1.0
CE A:LYS934 4.5 87.1 1.0
O A:ASP954 4.5 87.4 1.0
N A:GLY341 4.7 102.9 1.0
O A:ASP340 4.8 102.3 1.0
OD2 A:ASP958 4.8 92.4 1.0
OD1 A:ASP954 4.8 87.4 1.0
C A:GLY341 4.9 102.9 1.0
O A:THR562 4.9 88.5 1.0
CB A:ASN957 4.9 93.4 1.0
O A:GLY341 4.9 102.9 1.0
OG1 A:THR562 5.0 88.5 1.0

Fluorine binding site 3 out of 4 in 7oh6

Go back to Fluorine Binding Sites List in 7oh6
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1502

b:90.0
occ:1.00
F3 A:ALF1502 0.0 90.0 1.0
AL A:ALF1502 1.8 90.0 1.0
OD1 A:ASP560 2.5 85.8 1.0
F1 A:ALF1502 2.5 90.0 1.0
F2 A:ALF1502 2.6 90.0 1.0
N A:GLY836 2.7 88.1 1.0
OG1 A:THR835 3.2 87.9 1.0
NZ A:LYS934 3.3 87.1 1.0
CA A:THR835 3.3 87.9 1.0
C A:THR835 3.5 87.9 1.0
F4 A:ALF1502 3.6 90.0 1.0
CG A:ASP560 3.6 85.8 1.0
CA A:GLY836 3.7 88.1 1.0
CB A:THR835 3.8 87.9 1.0
ND2 A:ASN957 4.0 93.4 1.0
OD1 A:ASP837 4.1 94.0 1.0
CE A:LYS934 4.1 87.1 1.0
CB A:ASP560 4.4 85.8 1.0
CA A:GLY341 4.5 102.9 1.0
O A:LEU834 4.5 82.9 1.0
OE1 A:GLU342 4.5 103.3 1.0
OD2 A:ASP560 4.5 85.8 1.0
N A:THR835 4.6 87.9 1.0
N A:LYS561 4.6 86.4 1.0
C A:GLY836 4.6 88.1 1.0
N A:ASP837 4.6 94.0 1.0
O A:THR835 4.7 87.9 1.0
O A:HOH1601 4.8 90.5 1.0
N A:GLY341 4.8 102.9 1.0
OE2 A:GLU342 4.8 103.3 1.0
OG1 A:THR562 4.8 88.5 1.0
MG A:MG1503 5.0 88.6 1.0
C A:LEU834 5.0 82.9 1.0
CA A:ASP560 5.0 85.8 1.0

Fluorine binding site 4 out of 4 in 7oh6

Go back to Fluorine Binding Sites List in 7oh6
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of DRS2P-CDC50P in the [Ps]E2-Alfx State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1502

b:90.0
occ:1.00
F4 A:ALF1502 0.0 90.0 1.0
MG A:MG1503 1.7 88.6 1.0
AL A:ALF1502 1.8 90.0 1.0
OD1 A:ASP560 2.5 85.8 1.0
F1 A:ALF1502 2.5 90.0 1.0
F2 A:ALF1502 2.5 90.0 1.0
OD2 A:ASP560 2.6 85.8 1.0
O A:HOH1601 2.6 90.5 1.0
O A:THR562 2.7 88.5 1.0
O A:HOH1602 2.7 88.7 1.0
OG1 A:THR562 2.7 88.5 1.0
CG A:ASP560 2.9 85.8 1.0
C A:THR562 3.6 88.5 1.0
F3 A:ALF1502 3.6 90.0 1.0
N A:THR562 3.7 88.5 1.0
CB A:THR562 3.8 88.5 1.0
OD1 A:ASP954 3.8 87.4 1.0
CA A:THR562 3.8 88.5 1.0
O A:GLY341 3.9 102.9 1.0
CA A:GLY341 4.2 102.9 1.0
OE2 A:GLU342 4.2 103.3 1.0
C A:GLY341 4.4 102.9 1.0
CB A:ASP560 4.4 85.8 1.0
C A:LYS561 4.5 86.4 1.0
N A:LYS561 4.6 86.4 1.0
N A:GLY563 4.7 87.4 1.0
CG A:ASP954 4.8 87.4 1.0
CD A:GLU342 4.9 103.3 1.0
OE1 A:GLU342 4.9 103.3 1.0
C A:ASP560 5.0 85.8 1.0

Reference:

M.Timcenko, T.Dieudonne, C.Montigny, T.Boesen, J.A.Lyons, G.Lenoir, P.Nissen. Structural Basis of Substrate-Independent Phosphorylation in A P4-Atpase Lipid Flippase J.Mol.Biol. 67062 2021.
ISSN: ESSN 1089-8638
PubMed: 34023399
DOI: 10.1016/J.JMB.2021.167062
Page generated: Sat Jul 10 14:35:51 2021

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