Fluorine in PDB 7op1: Cryo-Em Structure of P5B-Atpase E2PIALF/Spm

Other elements in 7op1:

The structure of Cryo-Em Structure of P5B-Atpase E2PIALF/Spm also contains other interesting chemical elements:

Aluminium (Al) 1 atom
Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm (pdb code 7op1). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm, PDB code: 7op1:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 7op1

Go back to Fluorine Binding Sites List in 7op1
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of P5B-Atpase E2PIALF/Spm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:40.3
occ:1.00
 F1 A:ALF1402 0.0 40.3 1.0
AL A:ALF1402 1.8 40.3 1.0
F4 A:ALF1402 2.5 40.3 1.0
F3 A:ALF1402 2.5 40.3 1.0
OG1 A:THR682 2.9 33.8 1.0
OD1 A:ASP680 3.0 27.2 1.0
CB A:THR682 3.2 33.8 1.0
N A:THR682 3.2 33.8 1.0
F2 A:ALF1402 3.6 40.3 1.0
CG A:ASP680 3.7 27.2 1.0
OD2 A:ASP680 3.7 27.2 1.0
CA A:THR682 3.8 33.8 1.0
CA A:GLY503 3.9 46.1 1.0
OG1 A:THR957 3.9 33.5 1.0
MG A:MG1401 4.0 32.6 1.0
N A:LYS681 4.1 30.9 1.0
C A:LYS681 4.3 30.9 1.0
N A:GLY503 4.5 46.1 1.0
C A:GLY503 4.5 46.1 1.0
CG2 A:THR682 4.5 33.8 1.0
CA A:LYS681 4.5 30.9 1.0
N A:GLY958 4.5 32.0 1.0
CB A:LYS681 4.6 30.9 1.0
N A:GLY683 4.6 27.3 1.0
C A:THR682 4.7 33.8 1.0
O A:GLY503 4.9 46.1 1.0
CB A:THR957 4.9 33.5 1.0

Fluorine binding site 2 out of 4 in 7op1

Go back to Fluorine Binding Sites List in 7op1
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of P5B-Atpase E2PIALF/Spm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:40.3
occ:1.00
 F2 A:ALF1402 0.0 40.3 1.0
AL A:ALF1402 1.8 40.3 1.0
MG A:MG1401 2.0 32.6 1.0
OD2 A:ASP680 2.1 27.2 1.0
F3 A:ALF1402 2.5 40.3 1.0
F4 A:ALF1402 2.5 40.3 1.0
CG A:ASP680 3.0 27.2 1.0
OD2 A:ASP1099 3.1 34.1 1.0
OD1 A:ASP680 3.3 27.2 1.0
F1 A:ALF1402 3.6 40.3 1.0
OD1 A:ASP1095 4.0 33.4 1.0
CG A:ASP1099 4.0 34.1 1.0
CA A:GLY503 4.3 46.1 1.0
CB A:ASP680 4.3 27.2 1.0
ND2 A:ASN1098 4.3 40.5 1.0
OD1 A:ASP1099 4.3 34.1 1.0
CB A:ASN1098 4.4 40.5 1.0
N A:GLY1096 4.6 36.4 1.0
CG A:ASN1098 4.6 40.5 1.0
CA A:GLY1096 4.7 36.4 1.0
N A:ASP1095 4.8 33.4 1.0
NZ A:LYS1076 4.9 31.8 1.0

Fluorine binding site 3 out of 4 in 7op1

Go back to Fluorine Binding Sites List in 7op1
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of P5B-Atpase E2PIALF/Spm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:40.3
occ:1.00
 F3 A:ALF1402 0.0 40.3 1.0
AL A:ALF1402 1.8 40.3 1.0
MG A:MG1401 1.8 32.6 1.0
F2 A:ALF1402 2.5 40.3 1.0
F1 A:ALF1402 2.5 40.3 1.0
OD2 A:ASP680 2.9 27.2 1.0
N A:GLY683 3.1 27.3 1.0
CB A:THR682 3.1 33.8 1.0
N A:THR682 3.5 33.8 1.0
F4 A:ALF1402 3.6 40.3 1.0
CA A:THR682 3.6 33.8 1.0
C A:THR682 3.7 33.8 1.0
CG A:ASP680 3.7 27.2 1.0
OD1 A:ASP680 3.9 27.2 1.0
OG1 A:THR682 3.9 33.8 1.0
CA A:GLY683 4.0 27.3 1.0
CA A:GLY503 4.0 46.1 1.0
CG2 A:THR682 4.0 33.8 1.0
O A:GLY503 4.1 46.1 1.0
OD1 A:ASP1095 4.1 33.4 1.0
C A:GLY503 4.4 46.1 1.0
C A:LYS681 4.7 30.9 1.0
O A:THR682 4.7 33.8 1.0
CB A:ASP680 5.0 27.2 1.0
N A:LYS681 5.0 30.9 1.0

Fluorine binding site 4 out of 4 in 7op1

Go back to Fluorine Binding Sites List in 7op1
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of P5B-Atpase E2PIALF/Spm


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of P5B-Atpase E2PIALF/Spm within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1402

b:40.3
occ:1.00
 F4 A:ALF1402 0.0 40.3 1.0
AL A:ALF1402 1.8 40.3 1.0
OD1 A:ASP680 2.2 27.2 1.0
F1 A:ALF1402 2.5 40.3 1.0
F2 A:ALF1402 2.5 40.3 1.0
CG A:ASP680 3.0 27.2 1.0
OD2 A:ASP680 3.1 27.2 1.0
NZ A:LYS1076 3.1 31.8 1.0
ND2 A:ASN1098 3.4 40.5 1.0
F3 A:ALF1402 3.6 40.3 1.0
MG A:MG1401 4.0 32.6 1.0
CG A:ASN1098 4.1 40.5 1.0
CA A:GLY503 4.1 46.1 1.0
N A:GLY958 4.2 32.0 1.0
CE A:LYS1076 4.2 31.8 1.0
OD2 A:ASP1099 4.3 34.1 1.0
OD1 A:ASP1099 4.3 34.1 1.0
CB A:ASP680 4.4 27.2 1.0
N A:GLY503 4.5 46.1 1.0
OD1 A:ASN1098 4.7 40.5 1.0
CG A:ASP1099 4.7 34.1 1.0
CA A:THR957 4.7 33.5 1.0
OG1 A:THR957 4.8 33.5 1.0
N A:LYS681 4.8 30.9 1.0
CB A:ASN1098 4.8 40.5 1.0
O A:ILE956 4.9 25.8 1.0
CA A:ASP680 4.9 27.2 1.0
C A:THR957 4.9 33.5 1.0
CA A:GLY958 5.0 32.0 1.0

Reference:

L.Ping, K.T.Wang, N.Salustros, C.Gronberg, P.E.Gourdon. Structure and Transport Mechanism of P5B-Atpases To Be Published.
Page generated: Fri Aug 2 10:47:57 2024

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