Fluorine in PDB 7op5: Cryo-Em Structure of P5B-Atpase E2P
Other elements in 7op5:
The structure of Cryo-Em Structure of P5B-Atpase E2P also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of P5B-Atpase E2P
(pdb code 7op5). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Cryo-Em Structure of P5B-Atpase E2P, PDB code: 7op5:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7op5
Go back to
Fluorine Binding Sites List in 7op5
Fluorine binding site 1 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2P
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:34.9
occ:1.00
|
F1
|
A:BEF1401
|
0.0
|
34.9
|
1.0
|
BE
|
A:BEF1401
|
1.5
|
34.9
|
1.0
|
MG
|
A:MG1402
|
2.2
|
37.3
|
1.0
|
OD1
|
A:ASP680
|
2.4
|
31.9
|
1.0
|
F3
|
A:BEF1401
|
2.5
|
34.9
|
1.0
|
F2
|
A:BEF1401
|
2.6
|
34.9
|
1.0
|
OD1
|
A:ASP1099
|
3.0
|
45.0
|
1.0
|
CG
|
A:ASP680
|
3.1
|
31.9
|
1.0
|
OD1
|
A:ASP1095
|
3.4
|
46.8
|
1.0
|
OD2
|
A:ASP680
|
3.6
|
31.9
|
1.0
|
CG
|
A:ASP1099
|
3.6
|
45.0
|
1.0
|
N
|
A:GLY1096
|
4.1
|
52.8
|
1.0
|
NZ
|
A:LYS1076
|
4.1
|
30.0
|
1.0
|
CB
|
A:ASP680
|
4.2
|
31.9
|
1.0
|
CB
|
A:ASP1099
|
4.2
|
45.0
|
1.0
|
OD2
|
A:ASP1099
|
4.3
|
45.0
|
1.0
|
CA
|
A:GLY1096
|
4.4
|
52.8
|
1.0
|
CB
|
A:ASN1098
|
4.5
|
42.8
|
1.0
|
N
|
A:ASP1099
|
4.5
|
45.0
|
1.0
|
ND2
|
A:ASN1098
|
4.6
|
42.8
|
1.0
|
CG
|
A:ASP1095
|
4.6
|
46.8
|
1.0
|
O
|
A:THR682
|
4.6
|
37.2
|
1.0
|
N
|
A:ASP1095
|
4.7
|
46.8
|
1.0
|
C
|
A:GLY1096
|
4.9
|
52.8
|
1.0
|
O
|
A:GLY1096
|
4.9
|
52.8
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7op5
Go back to
Fluorine Binding Sites List in 7op5
Fluorine binding site 2 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2P
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:34.9
occ:1.00
|
F2
|
A:BEF1401
|
0.0
|
34.9
|
1.0
|
BE
|
A:BEF1401
|
1.6
|
34.9
|
1.0
|
MG
|
A:MG1402
|
1.9
|
37.3
|
1.0
|
F3
|
A:BEF1401
|
2.5
|
34.9
|
1.0
|
F1
|
A:BEF1401
|
2.6
|
34.9
|
1.0
|
O
|
A:THR682
|
2.8
|
37.2
|
1.0
|
OD1
|
A:ASP1095
|
3.1
|
46.8
|
1.0
|
CG2
|
A:THR682
|
3.4
|
37.2
|
1.0
|
OD2
|
A:ASP680
|
3.8
|
31.9
|
1.0
|
C
|
A:THR682
|
4.0
|
37.2
|
1.0
|
OD1
|
A:ASP680
|
4.0
|
31.9
|
1.0
|
CG
|
A:ASP1095
|
4.1
|
46.8
|
1.0
|
CG
|
A:ASP680
|
4.1
|
31.9
|
1.0
|
OD2
|
A:ASP1095
|
4.2
|
46.8
|
1.0
|
CB
|
A:THR682
|
4.4
|
37.2
|
1.0
|
CA
|
A:THR682
|
4.7
|
37.2
|
1.0
|
OG1
|
A:THR682
|
4.7
|
37.2
|
1.0
|
N
|
A:GLY1096
|
4.8
|
52.8
|
1.0
|
O
|
A:SER499
|
4.8
|
51.6
|
1.0
|
CA
|
A:GLY1096
|
4.9
|
52.8
|
1.0
|
N
|
A:THR682
|
4.9
|
37.2
|
1.0
|
CA
|
A:GLY503
|
4.9
|
44.4
|
1.0
|
N
|
A:GLY683
|
5.0
|
36.7
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7op5
Go back to
Fluorine Binding Sites List in 7op5
Fluorine binding site 3 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2P
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of P5B-Atpase E2P within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:34.9
occ:1.00
|
F3
|
A:BEF1401
|
0.0
|
34.9
|
1.0
|
BE
|
A:BEF1401
|
1.5
|
34.9
|
1.0
|
F2
|
A:BEF1401
|
2.5
|
34.9
|
1.0
|
F1
|
A:BEF1401
|
2.5
|
34.9
|
1.0
|
OD2
|
A:ASP680
|
2.7
|
31.9
|
1.0
|
OD1
|
A:ASP680
|
2.7
|
31.9
|
1.0
|
MG
|
A:MG1402
|
3.0
|
37.3
|
1.0
|
CG
|
A:ASP680
|
3.1
|
31.9
|
1.0
|
CG2
|
A:THR682
|
3.2
|
37.2
|
1.0
|
O
|
A:THR682
|
4.1
|
37.2
|
1.0
|
CA
|
A:GLY503
|
4.2
|
44.4
|
1.0
|
ND2
|
A:ASN1098
|
4.2
|
42.8
|
1.0
|
NZ
|
A:LYS1076
|
4.4
|
30.0
|
1.0
|
CB
|
A:ASP680
|
4.6
|
31.9
|
1.0
|
N
|
A:GLY958
|
4.6
|
28.1
|
1.0
|
N
|
A:THR682
|
4.6
|
37.2
|
1.0
|
CB
|
A:THR682
|
4.7
|
37.2
|
1.0
|
OG1
|
A:THR957
|
4.8
|
27.6
|
1.0
|
C
|
A:THR682
|
4.9
|
37.2
|
1.0
|
O
|
A:GLY503
|
4.9
|
44.4
|
1.0
|
OD1
|
A:ASP1095
|
5.0
|
46.8
|
1.0
|
CA
|
A:THR682
|
5.0
|
37.2
|
1.0
|
CA
|
A:THR957
|
5.0
|
27.6
|
1.0
|
|
Reference:
L.Ping,
K.T.Wang,
N.Salustros,
C.Gronberg,
P.E.Gourdon.
Structure and Transport Mechanism of P5B-Atpases To Be Published.
Page generated: Fri Aug 2 10:47:58 2024
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