Fluorine in PDB 7op8: Cryo-Em Structure of P5B-Atpase E2PINHIBIT
Other elements in 7op8:
The structure of Cryo-Em Structure of P5B-Atpase E2PINHIBIT also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT
(pdb code 7op8). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
Cryo-Em Structure of P5B-Atpase E2PINHIBIT, PDB code: 7op8:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7op8
Go back to
Fluorine Binding Sites List in 7op8
Fluorine binding site 1 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:28.7
occ:1.00
|
F1
|
A:BEF1401
|
0.0
|
28.7
|
1.0
|
BE
|
A:BEF1401
|
1.5
|
28.7
|
1.0
|
MG
|
A:MG1402
|
2.0
|
33.3
|
1.0
|
F3
|
A:BEF1401
|
2.5
|
28.7
|
1.0
|
F2
|
A:BEF1401
|
2.6
|
28.7
|
1.0
|
OD1
|
A:ASP1095
|
2.8
|
33.7
|
1.0
|
N
|
A:GLY1096
|
3.3
|
33.9
|
1.0
|
CA
|
A:GLY1096
|
3.3
|
33.9
|
1.0
|
OD2
|
A:ASP1099
|
3.6
|
37.6
|
1.0
|
OD2
|
A:ASP680
|
3.6
|
30.4
|
1.0
|
O
|
A:SER499
|
3.7
|
29.9
|
1.0
|
O
|
A:THR682
|
4.0
|
29.4
|
1.0
|
CG
|
A:ASP1095
|
4.0
|
33.7
|
1.0
|
OD1
|
A:ASN1098
|
4.0
|
32.5
|
1.0
|
CG
|
A:ASP680
|
4.1
|
30.4
|
1.0
|
O
|
A:MET500
|
4.2
|
36.4
|
1.0
|
CA
|
A:MET500
|
4.2
|
36.4
|
1.0
|
OD1
|
A:ASP680
|
4.3
|
30.4
|
1.0
|
C
|
A:GLY1096
|
4.3
|
33.9
|
1.0
|
CG
|
A:ASP1099
|
4.5
|
37.6
|
1.0
|
OG1
|
A:THR682
|
4.5
|
29.4
|
1.0
|
C
|
A:ASP1095
|
4.5
|
33.7
|
1.0
|
OD2
|
A:ASP1095
|
4.5
|
33.7
|
1.0
|
C
|
A:MET500
|
4.6
|
36.4
|
1.0
|
CB
|
A:ASN1098
|
4.6
|
32.5
|
1.0
|
C
|
A:SER499
|
4.7
|
29.9
|
1.0
|
O
|
A:THR502
|
4.7
|
31.0
|
1.0
|
CG
|
A:ASN1098
|
4.8
|
32.5
|
1.0
|
N
|
A:ASP1095
|
4.9
|
33.7
|
1.0
|
N
|
A:ALA1097
|
4.9
|
34.6
|
1.0
|
O
|
A:GLY1096
|
5.0
|
33.9
|
1.0
|
N
|
A:MET500
|
5.0
|
36.4
|
1.0
|
CB
|
A:ASP680
|
5.0
|
30.4
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7op8
Go back to
Fluorine Binding Sites List in 7op8
Fluorine binding site 2 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:28.7
occ:1.00
|
F2
|
A:BEF1401
|
0.0
|
28.7
|
1.0
|
BE
|
A:BEF1401
|
1.6
|
28.7
|
1.0
|
MG
|
A:MG1402
|
2.1
|
33.3
|
1.0
|
OG1
|
A:THR682
|
2.3
|
29.4
|
1.0
|
F3
|
A:BEF1401
|
2.5
|
28.7
|
1.0
|
F1
|
A:BEF1401
|
2.6
|
28.7
|
1.0
|
OD1
|
A:ASP680
|
2.6
|
30.4
|
1.0
|
O
|
A:THR682
|
3.1
|
29.4
|
1.0
|
CG
|
A:ASP680
|
3.2
|
30.4
|
1.0
|
OD2
|
A:ASP680
|
3.4
|
30.4
|
1.0
|
CB
|
A:THR682
|
3.6
|
29.4
|
1.0
|
N
|
A:THR682
|
3.7
|
29.4
|
1.0
|
CA
|
A:GLY503
|
3.8
|
29.9
|
1.0
|
O
|
A:SER499
|
3.8
|
29.9
|
1.0
|
C
|
A:THR682
|
3.9
|
29.4
|
1.0
|
CA
|
A:THR682
|
3.9
|
29.4
|
1.0
|
OD1
|
A:ASP1095
|
4.4
|
33.7
|
1.0
|
O
|
A:THR502
|
4.4
|
31.0
|
1.0
|
CB
|
A:ASP680
|
4.4
|
30.4
|
1.0
|
N
|
A:LYS681
|
4.6
|
31.3
|
1.0
|
O
|
A:GLY503
|
4.6
|
29.9
|
1.0
|
CG2
|
A:THR682
|
4.7
|
29.4
|
1.0
|
C
|
A:GLY503
|
4.7
|
29.9
|
1.0
|
N
|
A:GLY503
|
4.7
|
29.9
|
1.0
|
C
|
A:LYS681
|
4.7
|
31.3
|
1.0
|
OD1
|
A:ASN1098
|
4.8
|
32.5
|
1.0
|
C
|
A:THR502
|
4.9
|
31.0
|
1.0
|
C
|
A:SER499
|
5.0
|
29.9
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7op8
Go back to
Fluorine Binding Sites List in 7op8
Fluorine binding site 3 out
of 3 in the Cryo-Em Structure of P5B-Atpase E2PINHIBIT
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Cryo-Em Structure of P5B-Atpase E2PINHIBIT within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F1401
b:28.7
occ:1.00
|
F3
|
A:BEF1401
|
0.0
|
28.7
|
1.0
|
BE
|
A:BEF1401
|
1.5
|
28.7
|
1.0
|
MG
|
A:MG1402
|
2.0
|
33.3
|
1.0
|
O
|
A:THR682
|
2.2
|
29.4
|
1.0
|
OD1
|
A:ASP1095
|
2.2
|
33.7
|
1.0
|
F2
|
A:BEF1401
|
2.5
|
28.7
|
1.0
|
F1
|
A:BEF1401
|
2.5
|
28.7
|
1.0
|
CG
|
A:ASP680
|
3.0
|
30.4
|
1.0
|
CG
|
A:ASP1095
|
3.1
|
33.7
|
1.0
|
OD1
|
A:ASP680
|
3.1
|
30.4
|
1.0
|
OD2
|
A:ASP1095
|
3.3
|
33.7
|
1.0
|
OD2
|
A:ASP680
|
3.4
|
30.4
|
1.0
|
C
|
A:THR682
|
3.4
|
29.4
|
1.0
|
CB
|
A:ASP680
|
3.4
|
30.4
|
1.0
|
OG1
|
A:THR684
|
3.6
|
31.9
|
1.0
|
OD2
|
A:ASP1099
|
3.9
|
37.6
|
1.0
|
N
|
A:THR684
|
3.9
|
31.9
|
1.0
|
OG1
|
A:THR682
|
4.0
|
29.4
|
1.0
|
N
|
A:THR682
|
4.0
|
29.4
|
1.0
|
CA
|
A:THR682
|
4.2
|
29.4
|
1.0
|
CB
|
A:THR684
|
4.2
|
31.9
|
1.0
|
N
|
A:GLY683
|
4.3
|
28.7
|
1.0
|
N
|
A:GLY1096
|
4.3
|
33.9
|
1.0
|
CB
|
A:ASP1095
|
4.4
|
33.7
|
1.0
|
N
|
A:ASP1095
|
4.4
|
33.7
|
1.0
|
CA
|
A:GLY683
|
4.5
|
28.7
|
1.0
|
N
|
A:LYS681
|
4.5
|
31.3
|
1.0
|
C
|
A:GLY683
|
4.5
|
28.7
|
1.0
|
C
|
A:LYS681
|
4.7
|
31.3
|
1.0
|
CB
|
A:THR682
|
4.7
|
29.4
|
1.0
|
CA
|
A:THR684
|
4.7
|
31.9
|
1.0
|
CA
|
A:ASP680
|
4.7
|
30.4
|
1.0
|
CA
|
A:ASP1095
|
4.9
|
33.7
|
1.0
|
O
|
A:SER499
|
4.9
|
29.9
|
1.0
|
C
|
A:ASP680
|
4.9
|
30.4
|
1.0
|
|
Reference:
L.Ping,
G.Pontus.
Structure and Transport Mechanism of P5B-Atpases To Be Published.
Page generated: Fri Aug 2 10:47:59 2024
|