Fluorine in PDB 7q2y: Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)

Other elements in 7q2y:

The structure of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) (pdb code 7q2y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II), PDB code: 7q2y:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
 F1 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.5 46.5 1.0
N B:GLY1326 2.5 37.9 1.0
F3 A:BEF2002 2.5 46.5 1.0
F2 A:BEF2002 2.6 46.5 1.0
ND2 A:ASN34 3.1 39.2 1.0
CA B:GLY1326 3.2 37.9 1.0
OG B:SER1324 3.4 43.7 1.0
O2B A:ADP2001 3.5 56.4 1.0
N B:GLY1325 3.5 38.8 1.0
C B:GLY1325 3.6 38.8 1.0
O3B A:ADP2001 3.6 56.4 1.0
CB B:SER1324 3.7 43.7 1.0
CA B:GLY1325 3.8 38.8 1.0
O B:ALA1356 3.8 40.6 1.0
NE2 A:GLN147 3.9 37.4 1.0
CG A:ASN34 3.9 39.2 1.0
PB A:ADP2001 4.0 56.4 1.0
CB A:ASN34 4.1 39.2 1.0
C B:SER1324 4.1 43.7 1.0
CA A:ASN34 4.3 39.2 1.0
C B:GLY1326 4.4 37.9 1.0
O3A A:ADP2001 4.5 56.4 1.0
N B:GLU1327 4.5 41.4 1.0
CA B:SER1324 4.5 43.7 1.0
MG A:MG2003 4.6 42.4 1.0
OE1 A:GLN147 4.6 37.4 1.0
O B:GLY1325 4.7 38.8 1.0
N A:GLY35 4.7 42.0 1.0
CD A:GLN147 4.7 37.4 1.0
C B:ALA1356 4.8 40.6 1.0
O B:SER1324 4.8 43.7 1.0
OD1 A:ASN34 4.9 39.2 1.0
CB B:ALA1356 4.9 40.6 1.0

Fluorine binding site 2 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
 F2 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.6 46.5 1.0
F3 A:BEF2002 2.5 46.5 1.0
O3B A:ADP2001 2.5 56.4 1.0
ND2 A:ASN34 2.6 39.2 1.0
F1 A:BEF2002 2.6 46.5 1.0
CD1 A:LEU1144 3.3 36.9 1.0
OE2 A:GLU1113 3.5 40.4 1.0
PB A:ADP2001 3.6 56.4 1.0
O2B A:ADP2001 3.6 56.4 1.0
NZ A:LYS38 3.8 31.9 1.0
CG A:ASN34 3.8 39.2 1.0
CG A:LEU1144 3.9 36.9 1.0
CD2 A:LEU1144 3.9 36.9 1.0
CA A:ASN34 4.0 39.2 1.0
CE A:LYS38 4.1 31.9 1.0
CB A:ASN34 4.3 39.2 1.0
O B:ALA1356 4.4 40.6 1.0
CD A:GLU1113 4.4 40.4 1.0
N A:ASN34 4.6 39.2 1.0
O1B A:ADP2001 4.6 56.4 1.0
O A:LEU33 4.6 39.3 1.0
O3A A:ADP2001 4.7 56.4 1.0
C B:ALA1356 4.8 40.6 1.0
OD1 A:ASN34 4.8 39.2 1.0
NE2 A:GLN147 4.9 37.4 1.0
C A:LEU33 4.9 39.3 1.0
N B:GLY1326 4.9 37.9 1.0
N A:GLY35 4.9 42.0 1.0
OE1 A:GLU1113 5.0 40.4 1.0

Fluorine binding site 3 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
 F3 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.5 46.5 1.0
O2B A:ADP2001 2.3 56.4 1.0
F2 A:BEF2002 2.5 46.5 1.0
F1 A:BEF2002 2.5 46.5 1.0
OE1 A:GLN147 2.7 37.4 1.0
NE2 A:GLN147 2.7 37.4 1.0
CD A:GLN147 3.1 37.4 1.0
MG A:MG2003 3.2 42.4 1.0
PB A:ADP2001 3.3 56.4 1.0
OE2 A:GLU1113 3.3 40.4 1.0
O3B A:ADP2001 3.4 56.4 1.0
CG A:GLU1113 3.7 40.4 1.0
CD A:GLU1113 3.7 40.4 1.0
OG A:SER39 4.2 40.0 1.0
O1B A:ADP2001 4.3 56.4 1.0
O3A A:ADP2001 4.5 56.4 1.0
N B:GLY1325 4.5 38.8 1.0
CG A:GLN147 4.5 37.4 1.0
N B:GLY1326 4.6 37.9 1.0
OE1 A:GLU1113 4.6 40.4 1.0
ND2 A:ASN34 4.6 39.2 1.0
CB B:ALA1356 4.8 40.6 1.0
CA B:GLY1325 4.9 38.8 1.0
O B:ALA1356 4.9 40.6 1.0
CB B:SER1324 5.0 43.7 1.0

Fluorine binding site 4 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
 F1 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.5 44.7 1.0
OG A:SER1085 2.3 43.0 1.0
ND2 B:ASN187 2.5 38.7 1.0
F3 B:BEF2002 2.5 44.7 1.0
F2 B:BEF2002 2.6 44.7 1.0
N A:GLY1087 2.9 35.7 1.0
CG B:ASN187 3.4 38.7 1.0
CA A:GLY1087 3.4 35.7 1.0
O1B B:ADP2001 3.5 56.4 1.0
CB B:ASN187 3.5 38.7 1.0
CB A:SER1085 3.7 43.0 1.0
CA B:ASN187 3.8 38.7 1.0
O A:ALA1117 4.0 36.3 1.0
O3B B:ADP2001 4.0 56.4 1.0
N A:GLY1086 4.0 35.7 1.0
N B:GLY188 4.0 41.9 1.0
C A:GLY1086 4.1 35.7 1.0
NE2 B:GLN302 4.3 39.6 1.0
PB B:ADP2001 4.3 56.4 1.0
C B:ASN187 4.4 38.7 1.0
MG B:MG2003 4.4 38.2 1.0
C A:GLY1087 4.4 35.7 1.0
CA A:GLY1086 4.5 35.7 1.0
N A:GLN1088 4.5 34.8 1.0
OD1 B:ASN187 4.5 38.7 1.0
C A:SER1085 4.5 43.0 1.0
CA A:SER1085 4.6 43.0 1.0
NZ B:LYS191 4.9 39.9 1.0

Fluorine binding site 5 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
 F2 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.6 44.7 1.0
F3 B:BEF2002 2.5 44.7 1.0
F1 B:BEF2002 2.6 44.7 1.0
ND2 B:ASN187 2.8 38.7 1.0
CE B:LYS191 3.3 39.9 1.0
NZ B:LYS191 3.5 39.9 1.0
CD1 B:LEU1383 3.6 38.6 1.0
O1B B:ADP2001 3.6 56.4 1.0
MG B:MG2003 3.9 38.2 1.0
NE2 B:GLN302 4.0 39.6 1.0
CG B:ASN187 4.0 38.7 1.0
O3B B:ADP2001 4.1 56.4 1.0
PB B:ADP2001 4.4 56.4 1.0
CG B:LEU1383 4.4 38.6 1.0
O A:ALA1117 4.4 36.3 1.0
OG A:SER1085 4.5 43.0 1.0
CD2 B:LEU1383 4.6 38.6 1.0
CA B:ASN187 4.6 38.7 1.0
CD B:LYS191 4.6 39.9 1.0
CB B:ASN187 4.7 38.7 1.0
OD1 B:ASN187 4.9 38.7 1.0
CG B:LYS191 5.0 39.9 1.0

Fluorine binding site 6 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
 F3 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.5 44.7 1.0
MG B:MG2003 2.0 38.2 1.0
O1B B:ADP2001 2.3 56.4 1.0
F2 B:BEF2002 2.5 44.7 1.0
F1 B:BEF2002 2.5 44.7 1.0
NE2 B:GLN302 2.6 39.6 1.0
OG A:SER1085 3.2 43.0 1.0
CD B:GLN302 3.3 39.6 1.0
OE1 B:GLN302 3.4 39.6 1.0
PB B:ADP2001 3.6 56.4 1.0
N A:GLY1086 3.9 35.7 1.0
OG B:SER192 4.1 46.5 1.0
O3B B:ADP2001 4.2 56.4 1.0
CB A:SER1085 4.3 43.0 1.0
N A:GLY1087 4.3 35.7 1.0
ND2 B:ASN187 4.4 38.7 1.0
CA A:GLY1086 4.5 35.7 1.0
O2B B:ADP2001 4.6 56.4 1.0
CG B:GLN302 4.6 39.6 1.0
O3A B:ADP2001 4.6 56.4 1.0
CA A:SER1085 4.8 43.0 1.0
C A:SER1085 4.8 43.0 1.0
CE B:LYS191 5.0 39.9 1.0
O1A B:ADP2001 5.0 56.4 1.0
C A:GLY1086 5.0 35.7 1.0

Reference:

B.G.Lee, J.Rhodes, J.Lowe. Clamping of Dna Shuts the Condensin Neck Gate. Proc.Natl.Acad.Sci.Usa V. 119 06119 2022.
ISSN: ESSN 1091-6490
PubMed: 35349345
DOI: 10.1073/PNAS.2120006119
Page generated: Fri Aug 2 11:15:04 2024

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