Fluorine in PDB 7q2y: Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)

Other elements in 7q2y:

The structure of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) (pdb code 7q2y). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II), PDB code: 7q2y:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
F1 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.5 46.5 1.0
N B:GLY1326 2.5 37.9 1.0
F3 A:BEF2002 2.5 46.5 1.0
F2 A:BEF2002 2.6 46.5 1.0
ND2 A:ASN34 3.1 39.2 1.0
CA B:GLY1326 3.2 37.9 1.0
OG B:SER1324 3.4 43.7 1.0
O2B A:ADP2001 3.5 56.4 1.0
N B:GLY1325 3.5 38.8 1.0
C B:GLY1325 3.6 38.8 1.0
O3B A:ADP2001 3.6 56.4 1.0
CB B:SER1324 3.7 43.7 1.0
CA B:GLY1325 3.8 38.8 1.0
O B:ALA1356 3.8 40.6 1.0
NE2 A:GLN147 3.9 37.4 1.0
CG A:ASN34 3.9 39.2 1.0
PB A:ADP2001 4.0 56.4 1.0
CB A:ASN34 4.1 39.2 1.0
C B:SER1324 4.1 43.7 1.0
CA A:ASN34 4.3 39.2 1.0
C B:GLY1326 4.4 37.9 1.0
O3A A:ADP2001 4.5 56.4 1.0
N B:GLU1327 4.5 41.4 1.0
CA B:SER1324 4.5 43.7 1.0
MG A:MG2003 4.6 42.4 1.0
OE1 A:GLN147 4.6 37.4 1.0
O B:GLY1325 4.7 38.8 1.0
N A:GLY35 4.7 42.0 1.0
CD A:GLN147 4.7 37.4 1.0
C B:ALA1356 4.8 40.6 1.0
O B:SER1324 4.8 43.7 1.0
OD1 A:ASN34 4.9 39.2 1.0
CB B:ALA1356 4.9 40.6 1.0

Fluorine binding site 2 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
F2 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.6 46.5 1.0
F3 A:BEF2002 2.5 46.5 1.0
O3B A:ADP2001 2.5 56.4 1.0
ND2 A:ASN34 2.6 39.2 1.0
F1 A:BEF2002 2.6 46.5 1.0
CD1 A:LEU1144 3.3 36.9 1.0
OE2 A:GLU1113 3.5 40.4 1.0
PB A:ADP2001 3.6 56.4 1.0
O2B A:ADP2001 3.6 56.4 1.0
NZ A:LYS38 3.8 31.9 1.0
CG A:ASN34 3.8 39.2 1.0
CG A:LEU1144 3.9 36.9 1.0
CD2 A:LEU1144 3.9 36.9 1.0
CA A:ASN34 4.0 39.2 1.0
CE A:LYS38 4.1 31.9 1.0
CB A:ASN34 4.3 39.2 1.0
O B:ALA1356 4.4 40.6 1.0
CD A:GLU1113 4.4 40.4 1.0
N A:ASN34 4.6 39.2 1.0
O1B A:ADP2001 4.6 56.4 1.0
O A:LEU33 4.6 39.3 1.0
O3A A:ADP2001 4.7 56.4 1.0
C B:ALA1356 4.8 40.6 1.0
OD1 A:ASN34 4.8 39.2 1.0
NE2 A:GLN147 4.9 37.4 1.0
C A:LEU33 4.9 39.3 1.0
N B:GLY1326 4.9 37.9 1.0
N A:GLY35 4.9 42.0 1.0
OE1 A:GLU1113 5.0 40.4 1.0

Fluorine binding site 3 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F2002

b:46.5
occ:1.00
F3 A:BEF2002 0.0 46.5 1.0
BE A:BEF2002 1.5 46.5 1.0
O2B A:ADP2001 2.3 56.4 1.0
F2 A:BEF2002 2.5 46.5 1.0
F1 A:BEF2002 2.5 46.5 1.0
OE1 A:GLN147 2.7 37.4 1.0
NE2 A:GLN147 2.7 37.4 1.0
CD A:GLN147 3.1 37.4 1.0
MG A:MG2003 3.2 42.4 1.0
PB A:ADP2001 3.3 56.4 1.0
OE2 A:GLU1113 3.3 40.4 1.0
O3B A:ADP2001 3.4 56.4 1.0
CG A:GLU1113 3.7 40.4 1.0
CD A:GLU1113 3.7 40.4 1.0
OG A:SER39 4.2 40.0 1.0
O1B A:ADP2001 4.3 56.4 1.0
O3A A:ADP2001 4.5 56.4 1.0
N B:GLY1325 4.5 38.8 1.0
CG A:GLN147 4.5 37.4 1.0
N B:GLY1326 4.6 37.9 1.0
OE1 A:GLU1113 4.6 40.4 1.0
ND2 A:ASN34 4.6 39.2 1.0
CB B:ALA1356 4.8 40.6 1.0
CA B:GLY1325 4.9 38.8 1.0
O B:ALA1356 4.9 40.6 1.0
CB B:SER1324 5.0 43.7 1.0

Fluorine binding site 4 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
F1 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.5 44.7 1.0
OG A:SER1085 2.3 43.0 1.0
ND2 B:ASN187 2.5 38.7 1.0
F3 B:BEF2002 2.5 44.7 1.0
F2 B:BEF2002 2.6 44.7 1.0
N A:GLY1087 2.9 35.7 1.0
CG B:ASN187 3.4 38.7 1.0
CA A:GLY1087 3.4 35.7 1.0
O1B B:ADP2001 3.5 56.4 1.0
CB B:ASN187 3.5 38.7 1.0
CB A:SER1085 3.7 43.0 1.0
CA B:ASN187 3.8 38.7 1.0
O A:ALA1117 4.0 36.3 1.0
O3B B:ADP2001 4.0 56.4 1.0
N A:GLY1086 4.0 35.7 1.0
N B:GLY188 4.0 41.9 1.0
C A:GLY1086 4.1 35.7 1.0
NE2 B:GLN302 4.3 39.6 1.0
PB B:ADP2001 4.3 56.4 1.0
C B:ASN187 4.4 38.7 1.0
MG B:MG2003 4.4 38.2 1.0
C A:GLY1087 4.4 35.7 1.0
CA A:GLY1086 4.5 35.7 1.0
N A:GLN1088 4.5 34.8 1.0
OD1 B:ASN187 4.5 38.7 1.0
C A:SER1085 4.5 43.0 1.0
CA A:SER1085 4.6 43.0 1.0
NZ B:LYS191 4.9 39.9 1.0

Fluorine binding site 5 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
F2 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.6 44.7 1.0
F3 B:BEF2002 2.5 44.7 1.0
F1 B:BEF2002 2.6 44.7 1.0
ND2 B:ASN187 2.8 38.7 1.0
CE B:LYS191 3.3 39.9 1.0
NZ B:LYS191 3.5 39.9 1.0
CD1 B:LEU1383 3.6 38.6 1.0
O1B B:ADP2001 3.6 56.4 1.0
MG B:MG2003 3.9 38.2 1.0
NE2 B:GLN302 4.0 39.6 1.0
CG B:ASN187 4.0 38.7 1.0
O3B B:ADP2001 4.1 56.4 1.0
PB B:ADP2001 4.4 56.4 1.0
CG B:LEU1383 4.4 38.6 1.0
O A:ALA1117 4.4 36.3 1.0
OG A:SER1085 4.5 43.0 1.0
CD2 B:LEU1383 4.6 38.6 1.0
CA B:ASN187 4.6 38.7 1.0
CD B:LYS191 4.6 39.9 1.0
CB B:ASN187 4.7 38.7 1.0
OD1 B:ASN187 4.9 38.7 1.0
CG B:LYS191 5.0 39.9 1.0

Fluorine binding site 6 out of 6 in 7q2y

Go back to Fluorine Binding Sites List in 7q2y
Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II)


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Clamped S.Cerevisiae Condensin-Dna Complex (Form II) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F2002

b:44.7
occ:1.00
F3 B:BEF2002 0.0 44.7 1.0
BE B:BEF2002 1.5 44.7 1.0
MG B:MG2003 2.0 38.2 1.0
O1B B:ADP2001 2.3 56.4 1.0
F2 B:BEF2002 2.5 44.7 1.0
F1 B:BEF2002 2.5 44.7 1.0
NE2 B:GLN302 2.6 39.6 1.0
OG A:SER1085 3.2 43.0 1.0
CD B:GLN302 3.3 39.6 1.0
OE1 B:GLN302 3.4 39.6 1.0
PB B:ADP2001 3.6 56.4 1.0
N A:GLY1086 3.9 35.7 1.0
OG B:SER192 4.1 46.5 1.0
O3B B:ADP2001 4.2 56.4 1.0
CB A:SER1085 4.3 43.0 1.0
N A:GLY1087 4.3 35.7 1.0
ND2 B:ASN187 4.4 38.7 1.0
CA A:GLY1086 4.5 35.7 1.0
O2B B:ADP2001 4.6 56.4 1.0
CG B:GLN302 4.6 39.6 1.0
O3A B:ADP2001 4.6 56.4 1.0
CA A:SER1085 4.8 43.0 1.0
C A:SER1085 4.8 43.0 1.0
CE B:LYS191 5.0 39.9 1.0
O1A B:ADP2001 5.0 56.4 1.0
C A:GLY1086 5.0 35.7 1.0

Reference:

B.G.Lee, J.Rhodes, J.Lowe. Clamping of Dna Shuts the Condensin Neck Gate. Proc.Natl.Acad.Sci.Usa V. 119 06119 2022.
ISSN: ESSN 1091-6490
PubMed: 35349345
DOI: 10.1073/PNAS.2120006119
Page generated: Fri Aug 2 11:15:04 2024

Last articles

Na in 4FEV
Na in 4FEW
Na in 4FM6
Na in 4FLL
Na in 4FLK
Na in 4FLJ
Na in 4FLI
Na in 4FLG
Na in 4FAX
Na in 4FKP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy