Fluorine in PDB 7qh1: Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease

Protein crystallography data

The structure of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease, PDB code: 7qh1 was solved by P.M.Leonard, D.Davies, T.D.Pallin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.73 / 2.74
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 120.98, 44.52, 161.71, 90, 100.61, 90
R / Rfree (%) 25.6 / 30.1

Other elements in 7qh1:

The structure of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease also contains other interesting chemical elements:

Calcium (Ca) 8 atoms
Zinc (Zn) 4 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease (pdb code 7qh1). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 8 binding sites of Fluorine where determined in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease, PDB code: 7qh1:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Fluorine binding site 1 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 1 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:40.5
occ:1.00
 F1 A:CI8402 0.0 40.5 1.0
C14 A:CI8402 1.4 36.7 1.0
C15 A:CI8402 2.3 34.7 1.0
C13 A:CI8402 2.4 33.8 1.0
F2 A:CI8402 2.7 34.0 1.0
CD1 A:ILE190 3.0 37.8 1.0
CA A:GLY187 3.3 39.6 1.0
C16 A:CI8402 3.6 33.6 1.0
C12 A:CI8402 3.6 30.6 1.0
CE1 A:PHE129 3.8 48.8 1.0
CG1 A:ILE190 3.8 39.0 1.0
CD2 A:LEU197 3.9 40.9 1.0
CG2 A:VAL137 4.1 48.3 1.0
C17 A:CI8402 4.1 30.8 1.0
O A:GLY187 4.1 42.2 1.0
CD1 A:PHE129 4.2 47.8 1.0
C A:GLY187 4.3 40.7 1.0
N A:GLY187 4.3 40.0 1.0
CB A:LEU197 4.3 38.3 1.0
CZ A:PHE129 4.4 48.8 1.0
O A:ILE186 4.7 43.6 1.0
CG A:LEU197 4.8 40.3 1.0
C A:ILE186 4.8 42.7 1.0
CD2 A:LEU132 4.9 40.0 1.0

Fluorine binding site 2 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 2 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:34.0
occ:1.00
 F2 A:CI8402 0.0 34.0 1.0
C15 A:CI8402 1.4 34.7 1.0
C16 A:CI8402 2.4 33.6 1.0
C14 A:CI8402 2.4 36.7 1.0
F1 A:CI8402 2.7 40.5 1.0
N A:GLY187 3.0 40.0 1.0
CA A:GLY187 3.0 39.6 1.0
CG2 A:ILE186 3.1 43.9 1.0
C A:ILE186 3.4 42.7 1.0
C17 A:CI8402 3.6 30.8 1.0
C13 A:CI8402 3.6 33.8 1.0
O A:ILE186 3.7 43.6 1.0
OD1 A:ASP136 4.1 58.8 1.0
C12 A:CI8402 4.1 30.6 1.0
CA A:ILE186 4.1 44.6 1.0
CG2 A:VAL137 4.2 48.3 1.0
CB A:ILE186 4.2 43.2 1.0
CD2 A:LEU197 4.5 40.9 1.0
C A:GLY187 4.5 40.7 1.0
O A:HOH505 4.5 44.7 1.0
NH2 A:ARG198 4.7 31.5 1.0
CB A:LEU197 4.8 38.3 1.0
CG A:ASP136 4.8 52.0 1.0
C18 A:CI8402 5.0 30.7 1.0

Fluorine binding site 3 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 3 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:43.5
occ:1.00
 F1 B:CI8402 0.0 43.5 1.0
C14 B:CI8402 1.4 44.3 1.0
C15 B:CI8402 2.4 40.7 1.0
C13 B:CI8402 2.4 43.3 1.0
CD1 B:ILE190 2.7 42.9 1.0
F2 B:CI8402 2.7 36.5 1.0
CA B:GLY187 3.3 40.1 1.0
CE1 B:PHE129 3.5 47.0 1.0
C16 B:CI8402 3.6 40.0 1.0
C12 B:CI8402 3.6 40.1 1.0
CG1 B:ILE190 3.8 41.5 1.0
CD1 B:PHE129 4.0 45.1 1.0
O B:GLY187 4.1 33.4 1.0
CD2 B:LEU197 4.1 38.9 1.0
CG2 B:VAL137 4.1 43.9 1.0
C17 B:CI8402 4.1 39.5 1.0
CZ B:PHE129 4.2 44.6 1.0
C B:GLY187 4.2 37.9 1.0
CB B:LEU197 4.2 40.5 1.0
N B:GLY187 4.3 42.4 1.0
O B:ILE186 4.7 50.1 1.0
CG B:LEU197 4.8 39.6 1.0
C B:ILE186 4.8 44.6 1.0
CD2 B:LEU132 4.9 47.2 1.0

Fluorine binding site 4 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 4 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:36.5
occ:1.00
 F2 B:CI8402 0.0 36.5 1.0
C15 B:CI8402 1.4 40.7 1.0
C16 B:CI8402 2.4 40.0 1.0
C14 B:CI8402 2.4 44.3 1.0
F1 B:CI8402 2.7 43.5 1.0
CG2 B:ILE186 2.9 36.6 1.0
N B:GLY187 3.0 42.4 1.0
CA B:GLY187 3.0 40.1 1.0
C B:ILE186 3.2 44.6 1.0
O B:ILE186 3.5 50.1 1.0
C17 B:CI8402 3.6 39.5 1.0
C13 B:CI8402 3.6 43.3 1.0
CA B:ILE186 4.0 42.0 1.0
CB B:ILE186 4.0 39.3 1.0
C12 B:CI8402 4.1 40.1 1.0
CD2 B:LEU197 4.2 38.9 1.0
CG2 B:VAL137 4.3 43.9 1.0
CB B:LEU197 4.4 40.5 1.0
O B:HOH504 4.5 39.9 1.0
C B:GLY187 4.5 37.9 1.0
NH2 B:ARG198 4.5 33.7 1.0
OD1 B:ASP136 4.5 51.6 1.0
CG B:LEU197 4.9 39.6 1.0
C18 B:CI8402 5.0 41.1 1.0
CZ B:ARG198 5.0 36.0 1.0

Fluorine binding site 5 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 5 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F402

b:27.1
occ:1.00
 F1 C:CI8402 0.0 27.1 1.0
C14 C:CI8402 1.3 26.9 1.0
C15 C:CI8402 2.4 27.6 1.0
C13 C:CI8402 2.4 26.9 1.0
F2 C:CI8402 2.7 24.7 1.0
CD1 C:ILE190 3.0 30.7 1.0
CA C:GLY187 3.1 27.9 1.0
CE1 C:PHE129 3.5 44.1 1.0
C12 C:CI8402 3.6 27.8 1.0
C16 C:CI8402 3.6 27.5 1.0
CG1 C:ILE190 3.8 30.8 1.0
O C:GLY187 3.9 28.8 1.0
CD1 C:PHE129 3.9 43.8 1.0
C C:GLY187 4.0 28.4 1.0
C17 C:CI8402 4.1 27.6 1.0
CB C:LEU197 4.1 25.5 1.0
N C:GLY187 4.2 29.4 1.0
CD2 C:LEU197 4.2 26.4 1.0
CZ C:PHE129 4.2 43.2 1.0
CG2 C:VAL137 4.4 31.1 1.0
O C:ILE186 4.5 29.4 1.0
C C:ILE186 4.7 30.7 1.0
CG C:LEU197 4.8 25.3 1.0
CG C:PHE129 4.9 43.6 1.0
C11 C:CI8402 5.0 27.5 1.0

Fluorine binding site 6 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 6 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F402

b:24.7
occ:1.00
 F2 C:CI8402 0.0 24.7 1.0
C15 C:CI8402 1.4 27.6 1.0
C16 C:CI8402 2.4 27.5 1.0
C14 C:CI8402 2.4 26.9 1.0
CA C:GLY187 2.7 27.9 1.0
F1 C:CI8402 2.7 27.1 1.0
N C:GLY187 2.7 29.4 1.0
O C:HOH505 3.2 30.5 1.0
C C:ILE186 3.3 30.7 1.0
CG2 C:ILE186 3.4 29.1 1.0
C17 C:CI8402 3.6 27.6 1.0
C13 C:CI8402 3.6 26.9 1.0
O C:ILE186 3.7 29.4 1.0
OD2 C:ASP136 3.8 42.3 1.0
CG2 C:VAL137 3.8 31.1 1.0
C12 C:CI8402 4.1 27.8 1.0
CA C:ILE186 4.1 30.5 1.0
C C:GLY187 4.2 28.4 1.0
CB C:ILE186 4.4 29.8 1.0
CG C:ASP136 4.6 41.4 1.0
O C:GLY187 4.8 28.8 1.0
CD1 C:ILE190 4.8 30.7 1.0
CB C:LEU197 5.0 25.5 1.0
C18 C:CI8402 5.0 27.7 1.0

Fluorine binding site 7 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 7 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F402

b:25.0
occ:1.00
 F1 D:CI8402 0.0 25.0 1.0
C14 D:CI8402 1.4 26.7 1.0
C15 D:CI8402 2.4 25.6 1.0
C13 D:CI8402 2.4 27.4 1.0
F2 D:CI8402 2.7 24.4 1.0
CD1 D:ILE190 2.9 34.2 1.0
CA D:GLY187 3.2 28.7 1.0
C16 D:CI8402 3.6 26.5 1.0
CE1 D:PHE129 3.6 37.5 1.0
C12 D:CI8402 3.6 27.8 1.0
CG1 D:ILE190 3.7 33.9 1.0
CD1 D:PHE129 4.0 36.8 1.0
O D:GLY187 4.0 29.7 1.0
C17 D:CI8402 4.1 27.0 1.0
C D:GLY187 4.2 29.4 1.0
CG2 D:VAL137 4.2 37.1 1.0
N D:GLY187 4.2 27.2 1.0
CZ D:PHE129 4.3 37.6 1.0
CB D:LEU197 4.3 25.1 1.0
CD2 D:LEU197 4.4 27.2 1.0
O D:ILE186 4.6 27.4 1.0
C D:ILE186 4.7 26.2 1.0
CD2 D:LEU132 4.9 36.0 1.0

Fluorine binding site 8 out of 8 in 7qh1

Go back to Fluorine Binding Sites List in 7qh1
Fluorine binding site 8 out of 8 in the Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F402

b:24.4
occ:1.00
 F2 D:CI8402 0.0 24.4 1.0
C15 D:CI8402 1.4 25.6 1.0
C14 D:CI8402 2.4 26.7 1.0
C16 D:CI8402 2.4 26.5 1.0
F1 D:CI8402 2.7 25.0 1.0
N D:GLY187 2.9 27.2 1.0
CA D:GLY187 2.9 28.7 1.0
CG2 D:ILE186 3.4 28.9 1.0
C D:ILE186 3.4 26.2 1.0
C17 D:CI8402 3.6 27.0 1.0
C13 D:CI8402 3.6 27.4 1.0
O D:ILE186 3.8 27.4 1.0
OD2 D:ASP136 3.8 32.3 1.0
CG2 D:VAL137 3.9 37.1 1.0
C12 D:CI8402 4.1 27.8 1.0
CA D:ILE186 4.2 26.9 1.0
CB D:ILE186 4.4 29.0 1.0
C D:GLY187 4.4 29.4 1.0
CG D:ASP136 4.6 35.2 1.0
CD1 D:ILE190 4.9 34.2 1.0
NH2 D:ARG198 4.9 30.9 1.0
C18 D:CI8402 5.0 27.9 1.0

Reference:

M.Everett, D.Davies, S.Leiris, M.Zalacain, N.Sprynski, M.Lemonnier, A.Llanos, C.Lozano, L.Beyria, J.Castandet, J.Denis-Docquier, C.Larock, T.D.Pallin, A.Cridland, T.Blench. Discovery and Development of A Novel Inhaled Antivirulence Therapy For the Treatment of Pseudomonas Aeruginosa Infections in Patients with Chronic Respiratory Disease To Be Published.
Page generated: Fri Aug 2 11:27:53 2024

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