Fluorine in PDB 7qv9: Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

Enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

Other elements in 7qv9:

Fluorine Binding Sites:

Fluorine binding site 1 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 1 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ a:F602 b:36.1 occ:1.00 F1 a:AF3602 0.0 36.1 1.0 AL a:AF3602 1.8 35.5 1.0 NZ a:LYS42 2.6 265.8 1.0 O3B a:ADP601 2.8 55.0 1.0 O2B a:ADP601 2.8 56.7 1.0 PB a:ADP601 3.0 54.7 1.0 F3 a:AF3602 3.1 35.4 1.0 F2 a:AF3602 3.1 40.1 1.0 O1B a:ADP601 3.4 28.0 1.0 CE a:LYS42 3.5 115.9 1.0 CD a:LYS42 3.5 109.2 1.0 CB a:LYS42 4.1 97.2 1.0 CG a:LYS42 4.4 85.4 1.0 O3A a:ADP601 4.6 52.1 1.0 N a:GLY39 4.6 229.5 1.0 CB a:ASN149 4.7 40.6 1.0 OD1 a:ASP107 4.8 193.7 1.0

Fluorine binding site 2 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 2 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ a:F602 b:40.1 occ:1.00 F2 a:AF3602 0.0 40.1 1.0 AL a:AF3602 1.8 35.5 1.0 OD1 a:ASP107 2.6 193.7 1.0 F3 a:AF3602 3.1 35.4 1.0 F1 a:AF3602 3.1 36.1 1.0 O1B a:ADP601 3.4 28.0 1.0 CG a:ASP107 3.4 288.9 1.0 O2B a:ADP601 3.7 56.7 1.0 OD2 a:ASP107 3.7 386.9 1.0 PB a:ADP601 4.0 54.7 1.0 O2A a:ADP601 4.6 21.9 1.0 CB a:ASP107 4.6 88.3 1.0 CG a:GLU108 4.7 202.0 1.0 O3B a:ADP601 4.8 55.0 1.0 NH2 f:ARG168 5.0 47.5 1.0 NH1 f:ARG168 5.0 39.2 1.0

Fluorine binding site 3 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 3 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ a:F602 b:35.4 occ:1.00 F3 a:AF3602 0.0 35.4 1.0 AL a:AF3602 1.8 35.5 1.0 NH2 f:ARG168 2.6 47.5 1.0 O2B a:ADP601 3.1 56.7 1.0 F1 a:AF3602 3.1 36.1 1.0 F2 a:AF3602 3.1 40.1 1.0 CZ f:ARG168 3.4 109.0 1.0 NH1 f:ARG168 3.5 39.2 1.0 OD2 f:ASP164 3.9 93.9 1.0 PB a:ADP601 4.3 54.7 1.0 CD1 f:LEU121 4.5 61.7 1.0 CD a:GLU108 4.5 389.0 1.0 CG a:GLU108 4.6 202.0 1.0 NE f:ARG168 4.6 66.6 1.0 OE1 a:GLU108 4.7 462.5 1.0 OE2 a:GLU108 4.7 194.8 1.0 O1B a:ADP601 4.8 28.0 1.0 O3B a:ADP601 5.0 55.0 1.0

Fluorine binding site 4 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 4 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ b:F602 b:66.5 occ:1.00 F1 b:AF3602 0.0 66.5 1.0 AL b:AF3602 1.8 84.7 1.0 O2B b:ADP601 2.8 67.7 1.0 NZ b:LYS42 3.1 28.3 1.0 PB b:ADP601 3.1 104.0 1.0 F2 b:AF3602 3.1 55.5 1.0 F3 b:AF3602 3.1 52.0 1.0 O1B b:ADP601 3.2 113.5 1.0 O3B b:ADP601 3.5 42.4 1.0 CB b:ASN149 3.9 37.9 1.0 CE b:LYS42 4.0 79.1 1.0 CG b:ASN149 4.4 171.2 1.0 CD b:LYS42 4.4 157.5 1.0 OE1 b:GLU108 4.6 112.4 1.0 N b:ASN149 4.6 59.4 1.0 O3A b:ADP601 4.7 67.8 1.0 O b:GLY36 4.7 187.1 1.0 OD1 b:ASN149 4.8 208.7 1.0 CA b:ASN149 4.8 117.0 1.0 OE2 b:GLU108 4.8 178.1 1.0 O b:GLU37 4.8 66.2 1.0 OD1 b:ASP107 4.9 89.2 1.0 ND2 b:ASN149 4.9 32.8 1.0

Fluorine binding site 5 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 5 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ b:F602 b:55.5 occ:1.00 F2 b:AF3602 0.0 55.5 1.0 AL b:AF3602 1.8 84.7 1.0 O1B b:ADP601 2.4 113.5 1.0 OD2 b:ASP107 2.9 272.1 1.0 F1 b:AF3602 3.1 66.5 1.0 F3 b:AF3602 3.1 52.0 1.0 OE1 b:GLU108 3.1 112.4 1.0 OD1 b:ASP107 3.4 89.2 1.0 CG b:ASP107 3.6 253.2 1.0 PB b:ADP601 3.7 104.0 1.0 O3B b:ADP601 4.1 42.4 1.0 CD b:GLU108 4.2 338.7 1.0 O2B b:ADP601 4.4 67.7 1.0 NH2 a:ARG168 4.6 92.1 1.0 OE2 b:GLU108 4.7 178.1 1.0 O1A b:ADP601 4.8 42.8 1.0 O3A b:ADP601 4.9 67.8 1.0

Fluorine binding site 6 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 6 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ b:F602 b:52.0 occ:1.00 F3 b:AF3602 0.0 52.0 1.0 AL b:AF3602 1.8 84.7 1.0 F1 b:AF3602 3.1 66.5 1.0 F2 b:AF3602 3.1 55.5 1.0 NH2 a:ARG168 3.1 92.1 1.0 O1B b:ADP601 3.3 113.5 1.0 OE1 b:GLU108 3.5 112.4 1.0 O2B b:ADP601 3.7 67.7 1.0 CZ a:ARG168 4.0 123.4 1.0 OD2 a:ASP164 4.0 399.7 1.0 PB b:ADP601 4.1 104.0 1.0 NH1 a:ARG168 4.3 71.2 1.0 CB a:ASP164 4.4 154.4 1.0 CD b:GLU108 4.4 338.7 1.0 OE2 b:GLU108 4.5 178.1 1.0 CG a:ASP164 4.5 297.7 1.0 NH2 b:ARG227 4.9 154.7 1.0 NE a:ARG168 5.0 76.2 1.0

Fluorine binding site 7 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 7 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ f:F602 b:159.0 occ:1.00 F1 f:AF3602 0.0 159.0 1.0 AL f:AF3602 1.8 87.7 1.0 O2B f:ADP601 2.8 98.7 1.0 OD1 f:ASP107 2.8 61.4 1.0 F3 f:AF3602 3.1 115.2 1.0 F2 f:AF3602 3.1 86.5 1.0 PB f:ADP601 3.3 137.7 1.0 OD2 f:ASP107 3.4 342.0 1.0 CG f:ASP107 3.5 281.0 1.0 O3B f:ADP601 3.6 115.9 1.0 O1B f:ADP601 4.2 45.1 1.0 O3A f:ADP601 4.6 90.2 1.0 O2A f:ADP601 4.7 55.0 1.0 NH2 e:ARG168 4.7 42.2 1.0 N f:GLU108 4.8 176.2 1.0 CB f:ASP107 4.9 166.1 1.0 CB f:GLU108 5.0 103.4 1.0

Fluorine binding site 8 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 8 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ f:F602 b:86.5 occ:1.00 F2 f:AF3602 0.0 86.5 1.0 AL f:AF3602 1.8 87.7 1.0 NH2 e:ARG168 2.5 42.2 1.0 F3 f:AF3602 3.1 115.2 1.0 F1 f:AF3602 3.1 159.0 1.0 CD2 e:LEU121 3.3 43.0 1.0 O3B f:ADP601 3.7 115.9 1.0 CZ e:ARG168 3.8 106.4 1.0 OD2 e:ASP164 4.2 434.3 1.0 CD1 e:LEU121 4.2 32.9 1.0 CG e:LEU121 4.3 113.6 1.0 PB f:ADP601 4.5 137.7 1.0 CB e:ASP164 4.5 125.8 1.0 NE e:ARG168 4.6 144.5 1.0 O2B f:ADP601 4.6 98.7 1.0 OD1 f:ASP107 4.7 61.4 1.0 NH1 e:ARG168 4.7 281.4 1.0 CB f:GLU108 4.8 103.4 1.0 CG e:ASP164 4.9 399.7 1.0

Fluorine binding site 9 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 9 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ f:F602 b:115.2 occ:1.00 F3 f:AF3602 0.0 115.2 1.0 AL f:AF3602 1.8 87.7 1.0 O3B f:ADP601 2.3 115.9 1.0 F2 f:AF3602 3.1 86.5 1.0 F1 f:AF3602 3.1 159.0 1.0 PB f:ADP601 3.1 137.7 1.0 O1B f:ADP601 3.4 45.1 1.0 ND2 f:ASN149 3.9 59.1 1.0 O2B f:ADP601 4.1 98.7 1.0 CE f:LYS42 4.3 198.2 1.0 O3A f:ADP601 4.3 90.2 1.0 OD2 e:ASP164 4.4 434.3 1.0 CA f:ARG38 4.6 95.7 1.0 N f:GLY39 4.7 95.0 1.0 CG f:ASN149 4.7 173.3 1.0 NZ f:LYS42 4.8 110.4 1.0 N f:ASN149 4.8 72.4 1.0 OE1 f:GLU108 4.8 246.2 1.0 CB f:ASN149 4.8 128.2 1.0

Fluorine binding site 10 out of 12 in 7qv9

Fluorine Binding Sites List in 7qv9

Fluorine binding site 10 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range: probe atom residue distance (Å) B Occ e:F602 b:66.5 occ:1.00 F1 e:AF3602 0.0 66.5 1.0 AL e:AF3602 1.8 84.7 1.0 F3 e:AF3602 3.1 52.0 1.0 F2 e:AF3602 3.1 55.5 1.0 O3B e:ADP601 3.3 381.9 1.0 O1B e:ADP601 3.8 127.4 1.0 PB e:ADP601 3.9 283.5 1.0 CA e:ARG38 4.0 235.2 1.0 N e:GLY39 4.1 202.4 1.0 OD2 e:ASP107 4.1 303.7 1.0 OE2 e:GLU108 4.2 470.3 1.0 CB e:ARG38 4.2 127.0 1.0 ND2 e:ASN149 4.3 370.5 1.0 O2B e:ADP601 4.5 324.1 1.0 NZ e:LYS42 4.5 93.0 1.0 C e:ARG38 4.6 227.3 1.0 OD2 d:ASP164 4.6 763.8 1.0

Reference: