Fluorine in PDB 7qv9: Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

Enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

All present enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf:
2.7.7.6;

Other elements in 7qv9:

The structure of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf also contains other interesting chemical elements:

Aluminium (Al) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Fluorine atom in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf (pdb code 7qv9). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf, PDB code: 7qv9:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 12 in 7qv9

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Fluorine binding site 1 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F602

b:36.1
occ:1.00
 F1 a:AF3602 0.0 36.1 1.0
AL a:AF3602 1.8 35.5 1.0
NZ a:LYS42 2.6 265.8 1.0
O3B a:ADP601 2.8 55.0 1.0
O2B a:ADP601 2.8 56.7 1.0
PB a:ADP601 3.0 54.7 1.0
F3 a:AF3602 3.1 35.4 1.0
F2 a:AF3602 3.1 40.1 1.0
O1B a:ADP601 3.4 28.0 1.0
CE a:LYS42 3.5 115.9 1.0
CD a:LYS42 3.5 109.2 1.0
CB a:LYS42 4.1 97.2 1.0
CG a:LYS42 4.4 85.4 1.0
O3A a:ADP601 4.6 52.1 1.0
N a:GLY39 4.6 229.5 1.0
CB a:ASN149 4.7 40.6 1.0
OD1 a:ASP107 4.8 193.7 1.0

Fluorine binding site 2 out of 12 in 7qv9

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Fluorine binding site 2 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F602

b:40.1
occ:1.00
 F2 a:AF3602 0.0 40.1 1.0
AL a:AF3602 1.8 35.5 1.0
OD1 a:ASP107 2.6 193.7 1.0
F3 a:AF3602 3.1 35.4 1.0
F1 a:AF3602 3.1 36.1 1.0
O1B a:ADP601 3.4 28.0 1.0
CG a:ASP107 3.4 288.9 1.0
O2B a:ADP601 3.7 56.7 1.0
OD2 a:ASP107 3.7 386.9 1.0
PB a:ADP601 4.0 54.7 1.0
O2A a:ADP601 4.6 21.9 1.0
CB a:ASP107 4.6 88.3 1.0
CG a:GLU108 4.7 202.0 1.0
O3B a:ADP601 4.8 55.0 1.0
NH2 f:ARG168 5.0 47.5 1.0
NH1 f:ARG168 5.0 39.2 1.0

Fluorine binding site 3 out of 12 in 7qv9

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Fluorine binding site 3 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
a:F602

b:35.4
occ:1.00
 F3 a:AF3602 0.0 35.4 1.0
AL a:AF3602 1.8 35.5 1.0
NH2 f:ARG168 2.6 47.5 1.0
O2B a:ADP601 3.1 56.7 1.0
F1 a:AF3602 3.1 36.1 1.0
F2 a:AF3602 3.1 40.1 1.0
CZ f:ARG168 3.4 109.0 1.0
NH1 f:ARG168 3.5 39.2 1.0
OD2 f:ASP164 3.9 93.9 1.0
PB a:ADP601 4.3 54.7 1.0
CD1 f:LEU121 4.5 61.7 1.0
CD a:GLU108 4.5 389.0 1.0
CG a:GLU108 4.6 202.0 1.0
NE f:ARG168 4.6 66.6 1.0
OE1 a:GLU108 4.7 462.5 1.0
OE2 a:GLU108 4.7 194.8 1.0
O1B a:ADP601 4.8 28.0 1.0
O3B a:ADP601 5.0 55.0 1.0

Fluorine binding site 4 out of 12 in 7qv9

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Fluorine binding site 4 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F602

b:66.5
occ:1.00
 F1 b:AF3602 0.0 66.5 1.0
AL b:AF3602 1.8 84.7 1.0
O2B b:ADP601 2.8 67.7 1.0
NZ b:LYS42 3.1 28.3 1.0
PB b:ADP601 3.1 104.0 1.0
F2 b:AF3602 3.1 55.5 1.0
F3 b:AF3602 3.1 52.0 1.0
O1B b:ADP601 3.2 113.5 1.0
O3B b:ADP601 3.5 42.4 1.0
CB b:ASN149 3.9 37.9 1.0
CE b:LYS42 4.0 79.1 1.0
CG b:ASN149 4.4 171.2 1.0
CD b:LYS42 4.4 157.5 1.0
OE1 b:GLU108 4.6 112.4 1.0
N b:ASN149 4.6 59.4 1.0
O3A b:ADP601 4.7 67.8 1.0
O b:GLY36 4.7 187.1 1.0
OD1 b:ASN149 4.8 208.7 1.0
CA b:ASN149 4.8 117.0 1.0
OE2 b:GLU108 4.8 178.1 1.0
O b:GLU37 4.8 66.2 1.0
OD1 b:ASP107 4.9 89.2 1.0
ND2 b:ASN149 4.9 32.8 1.0

Fluorine binding site 5 out of 12 in 7qv9

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Fluorine binding site 5 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F602

b:55.5
occ:1.00
 F2 b:AF3602 0.0 55.5 1.0
AL b:AF3602 1.8 84.7 1.0
O1B b:ADP601 2.4 113.5 1.0
OD2 b:ASP107 2.9 272.1 1.0
F1 b:AF3602 3.1 66.5 1.0
F3 b:AF3602 3.1 52.0 1.0
OE1 b:GLU108 3.1 112.4 1.0
OD1 b:ASP107 3.4 89.2 1.0
CG b:ASP107 3.6 253.2 1.0
PB b:ADP601 3.7 104.0 1.0
O3B b:ADP601 4.1 42.4 1.0
CD b:GLU108 4.2 338.7 1.0
O2B b:ADP601 4.4 67.7 1.0
NH2 a:ARG168 4.6 92.1 1.0
OE2 b:GLU108 4.7 178.1 1.0
O1A b:ADP601 4.8 42.8 1.0
O3A b:ADP601 4.9 67.8 1.0

Fluorine binding site 6 out of 12 in 7qv9

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Fluorine binding site 6 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F602

b:52.0
occ:1.00
 F3 b:AF3602 0.0 52.0 1.0
AL b:AF3602 1.8 84.7 1.0
F1 b:AF3602 3.1 66.5 1.0
F2 b:AF3602 3.1 55.5 1.0
NH2 a:ARG168 3.1 92.1 1.0
O1B b:ADP601 3.3 113.5 1.0
OE1 b:GLU108 3.5 112.4 1.0
O2B b:ADP601 3.7 67.7 1.0
CZ a:ARG168 4.0 123.4 1.0
OD2 a:ASP164 4.0 399.7 1.0
PB b:ADP601 4.1 104.0 1.0
NH1 a:ARG168 4.3 71.2 1.0
CB a:ASP164 4.4 154.4 1.0
CD b:GLU108 4.4 338.7 1.0
OE2 b:GLU108 4.5 178.1 1.0
CG a:ASP164 4.5 297.7 1.0
NH2 b:ARG227 4.9 154.7 1.0
NE a:ARG168 5.0 76.2 1.0

Fluorine binding site 7 out of 12 in 7qv9

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Fluorine binding site 7 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F602

b:159.0
occ:1.00
 F1 f:AF3602 0.0 159.0 1.0
AL f:AF3602 1.8 87.7 1.0
O2B f:ADP601 2.8 98.7 1.0
OD1 f:ASP107 2.8 61.4 1.0
F3 f:AF3602 3.1 115.2 1.0
F2 f:AF3602 3.1 86.5 1.0
PB f:ADP601 3.3 137.7 1.0
OD2 f:ASP107 3.4 342.0 1.0
CG f:ASP107 3.5 281.0 1.0
O3B f:ADP601 3.6 115.9 1.0
O1B f:ADP601 4.2 45.1 1.0
O3A f:ADP601 4.6 90.2 1.0
O2A f:ADP601 4.7 55.0 1.0
NH2 e:ARG168 4.7 42.2 1.0
N f:GLU108 4.8 176.2 1.0
CB f:ASP107 4.9 166.1 1.0
CB f:GLU108 5.0 103.4 1.0

Fluorine binding site 8 out of 12 in 7qv9

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Fluorine binding site 8 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F602

b:86.5
occ:1.00
 F2 f:AF3602 0.0 86.5 1.0
AL f:AF3602 1.8 87.7 1.0
NH2 e:ARG168 2.5 42.2 1.0
F3 f:AF3602 3.1 115.2 1.0
F1 f:AF3602 3.1 159.0 1.0
CD2 e:LEU121 3.3 43.0 1.0
O3B f:ADP601 3.7 115.9 1.0
CZ e:ARG168 3.8 106.4 1.0
OD2 e:ASP164 4.2 434.3 1.0
CD1 e:LEU121 4.2 32.9 1.0
CG e:LEU121 4.3 113.6 1.0
PB f:ADP601 4.5 137.7 1.0
CB e:ASP164 4.5 125.8 1.0
NE e:ARG168 4.6 144.5 1.0
O2B f:ADP601 4.6 98.7 1.0
OD1 f:ASP107 4.7 61.4 1.0
NH1 e:ARG168 4.7 281.4 1.0
CB f:GLU108 4.8 103.4 1.0
CG e:ASP164 4.9 399.7 1.0

Fluorine binding site 9 out of 12 in 7qv9

Go back to Fluorine Binding Sites List in 7qv9
Fluorine binding site 9 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
f:F602

b:115.2
occ:1.00
 F3 f:AF3602 0.0 115.2 1.0
AL f:AF3602 1.8 87.7 1.0
O3B f:ADP601 2.3 115.9 1.0
F2 f:AF3602 3.1 86.5 1.0
F1 f:AF3602 3.1 159.0 1.0
PB f:ADP601 3.1 137.7 1.0
O1B f:ADP601 3.4 45.1 1.0
ND2 f:ASN149 3.9 59.1 1.0
O2B f:ADP601 4.1 98.7 1.0
CE f:LYS42 4.3 198.2 1.0
O3A f:ADP601 4.3 90.2 1.0
OD2 e:ASP164 4.4 434.3 1.0
CA f:ARG38 4.6 95.7 1.0
N f:GLY39 4.7 95.0 1.0
CG f:ASN149 4.7 173.3 1.0
NZ f:LYS42 4.8 110.4 1.0
N f:ASN149 4.8 72.4 1.0
OE1 f:GLU108 4.8 246.2 1.0
CB f:ASN149 4.8 128.2 1.0

Fluorine binding site 10 out of 12 in 7qv9

Go back to Fluorine Binding Sites List in 7qv9
Fluorine binding site 10 out of 12 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
e:F602

b:66.5
occ:1.00
 F1 e:AF3602 0.0 66.5 1.0
AL e:AF3602 1.8 84.7 1.0
F3 e:AF3602 3.1 52.0 1.0
F2 e:AF3602 3.1 55.5 1.0
O3B e:ADP601 3.3 381.9 1.0
O1B e:ADP601 3.8 127.4 1.0
PB e:ADP601 3.9 283.5 1.0
CA e:ARG38 4.0 235.2 1.0
N e:GLY39 4.1 202.4 1.0
OD2 e:ASP107 4.1 303.7 1.0
OE2 e:GLU108 4.2 470.3 1.0
CB e:ARG38 4.2 127.0 1.0
ND2 e:ASN149 4.3 370.5 1.0
O2B e:ADP601 4.5 324.1 1.0
NZ e:LYS42 4.5 93.0 1.0
C e:ARG38 4.6 227.3 1.0
OD2 d:ASP164 4.6 763.8 1.0

Reference:

F.Z.Ye, F.Gao, X.J.Liu, B.W.Zhang, M.Buck, X.D.Zhang. Structural Organization of Aaa+ Transcription Complexes Reveal the Novel Dna-Protein Interactions Used For Dna Opening To Be Published.
Page generated: Fri Aug 2 11:48:56 2024

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