Fluorine in PDB 7qz7: Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Protein crystallography data
The structure of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp, PDB code: 7qz7
was solved by
A.M.W.H.Thunnissen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.71 /
2.30
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
102.495,
35.091,
68.074,
90,
98.01,
90
|
R / Rfree (%)
|
22.5 /
29
|
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Fluorine atom in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
(pdb code 7qz7). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 12 binding sites of Fluorine where determined in the
Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp, PDB code: 7qz7:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 1 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F67
b:101.5
occ:1.00
|
FAC
|
A:TFW67
|
0.0
|
101.5
|
1.0
|
CZ2
|
A:TFW67
|
1.4
|
88.7
|
1.0
|
CH2
|
A:TFW67
|
2.4
|
76.8
|
1.0
|
CE2
|
A:TFW67
|
2.4
|
78.3
|
1.0
|
HZ3
|
A:LYS77
|
2.4
|
105.1
|
1.0
|
FAD
|
A:TFW67
|
2.7
|
75.0
|
1.0
|
HZ2
|
A:LYS77
|
2.8
|
105.1
|
1.0
|
HE1
|
A:TFW67
|
2.9
|
106.8
|
1.0
|
NE1
|
A:TFW67
|
3.0
|
88.5
|
1.0
|
NZ
|
A:LYS77
|
3.0
|
87.1
|
1.0
|
HD2
|
A:LYS77
|
3.1
|
82.2
|
1.0
|
CZ3
|
A:TFW67
|
3.6
|
65.8
|
1.0
|
HG3
|
A:LYS77
|
3.7
|
68.0
|
1.0
|
HZ1
|
A:LYS77
|
3.7
|
105.1
|
1.0
|
CD2
|
A:TFW67
|
3.7
|
65.6
|
1.0
|
HB2
|
A:LYS77
|
3.7
|
58.3
|
1.0
|
CD
|
A:LYS77
|
3.8
|
68.0
|
1.0
|
CE
|
A:LYS77
|
4.0
|
91.6
|
1.0
|
CG
|
A:LYS77
|
4.1
|
56.3
|
1.0
|
CE3
|
A:TFW67
|
4.2
|
68.8
|
1.0
|
CD1
|
A:TFW67
|
4.3
|
82.4
|
1.0
|
HE2
|
A:LYS77
|
4.4
|
110.5
|
1.0
|
CB
|
A:LYS77
|
4.4
|
48.1
|
1.0
|
HD3
|
A:LYS77
|
4.6
|
82.2
|
1.0
|
CG
|
A:TFW67
|
4.6
|
76.0
|
1.0
|
HE3
|
A:LYS77
|
4.7
|
110.5
|
1.0
|
FAE
|
A:TFW67
|
4.8
|
76.2
|
1.0
|
|
Fluorine binding site 2 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 2 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F67
b:75.0
occ:1.00
|
FAD
|
A:TFW67
|
0.0
|
75.0
|
1.0
|
CH2
|
A:TFW67
|
1.4
|
76.8
|
1.0
|
CZ2
|
A:TFW67
|
2.3
|
88.7
|
1.0
|
CZ3
|
A:TFW67
|
2.4
|
65.8
|
1.0
|
FAC
|
A:TFW67
|
2.7
|
101.5
|
1.0
|
FAE
|
A:TFW67
|
2.8
|
76.2
|
1.0
|
HB2
|
A:LYS77
|
3.3
|
58.3
|
1.0
|
CE2
|
A:TFW67
|
3.6
|
78.3
|
1.0
|
CE3
|
A:TFW67
|
3.7
|
68.8
|
1.0
|
HD2
|
A:LYS77
|
3.8
|
82.2
|
1.0
|
CD2
|
A:TFW67
|
4.1
|
65.6
|
1.0
|
CB
|
A:LYS77
|
4.2
|
48.1
|
1.0
|
HE3
|
A:TFW67
|
4.6
|
83.1
|
1.0
|
HB3
|
A:LYS77
|
4.6
|
58.3
|
1.0
|
CD
|
A:LYS77
|
4.6
|
68.0
|
1.0
|
H
|
A:LYS77
|
4.7
|
76.1
|
1.0
|
HZ3
|
A:LYS77
|
4.7
|
105.1
|
1.0
|
HG3
|
A:LYS77
|
4.7
|
68.0
|
1.0
|
CG
|
A:LYS77
|
4.8
|
56.3
|
1.0
|
NE1
|
A:TFW67
|
4.9
|
88.5
|
1.0
|
N
|
A:LYS77
|
4.9
|
63.0
|
1.0
|
|
Fluorine binding site 3 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 3 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F67
b:76.2
occ:1.00
|
FAE
|
A:TFW67
|
0.0
|
76.2
|
1.0
|
CZ3
|
A:TFW67
|
1.4
|
65.8
|
1.0
|
CE3
|
A:TFW67
|
2.4
|
68.8
|
1.0
|
CH2
|
A:TFW67
|
2.4
|
76.8
|
1.0
|
HE3
|
A:TFW67
|
2.6
|
83.1
|
1.0
|
FAD
|
A:TFW67
|
2.8
|
75.0
|
1.0
|
HA
|
A:ARG76
|
3.1
|
79.0
|
1.0
|
HB3
|
A:ARG75
|
3.2
|
113.5
|
1.0
|
HB2
|
A:ARG75
|
3.4
|
113.5
|
1.0
|
N
|
A:ARG76
|
3.5
|
85.0
|
1.0
|
CA
|
A:ARG76
|
3.5
|
65.4
|
1.0
|
C
|
A:ARG76
|
3.6
|
60.5
|
1.0
|
H
|
A:LYS77
|
3.6
|
76.1
|
1.0
|
C
|
A:ARG75
|
3.6
|
81.4
|
1.0
|
CD2
|
A:TFW67
|
3.6
|
65.6
|
1.0
|
CZ2
|
A:TFW67
|
3.6
|
88.7
|
1.0
|
N
|
A:LYS77
|
3.7
|
63.0
|
1.0
|
HB2
|
A:LYS77
|
3.7
|
58.3
|
1.0
|
O
|
A:ARG75
|
3.7
|
90.6
|
1.0
|
CB
|
A:ARG75
|
3.7
|
94.1
|
1.0
|
H
|
A:ARG76
|
3.9
|
102.5
|
1.0
|
CE2
|
A:TFW67
|
4.1
|
78.3
|
1.0
|
O
|
A:ARG76
|
4.2
|
70.5
|
1.0
|
CA
|
A:ARG75
|
4.3
|
86.2
|
1.0
|
CA
|
A:LYS77
|
4.5
|
56.6
|
1.0
|
HA
|
A:LYS77
|
4.5
|
68.5
|
1.0
|
CB
|
A:LYS77
|
4.5
|
48.1
|
1.0
|
FAC
|
A:TFW67
|
4.8
|
101.5
|
1.0
|
HA
|
A:ARG75
|
4.8
|
104.0
|
1.0
|
HE
|
A:ARG75
|
4.9
|
136.6
|
1.0
|
CG
|
A:TFW67
|
5.0
|
76.0
|
1.0
|
HB3
|
A:LYS77
|
5.0
|
58.3
|
1.0
|
|
Fluorine binding site 4 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 4 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F96
b:90.4
occ:1.00
|
FAC
|
A:TFW96
|
0.0
|
90.4
|
1.0
|
CZ2
|
A:TFW96
|
1.4
|
83.1
|
1.0
|
HO17
|
B:DM1201
|
2.3
|
90.2
|
1.0
|
CE2
|
A:TFW96
|
2.3
|
79.1
|
1.0
|
CH2
|
A:TFW96
|
2.4
|
74.5
|
1.0
|
FAD
|
A:TFW96
|
2.8
|
71.1
|
1.0
|
HB3
|
B:ALA11
|
2.8
|
96.3
|
1.0
|
HG3
|
B:MET8
|
2.8
|
112.7
|
1.0
|
HE1
|
A:TFW96
|
2.8
|
86.1
|
1.0
|
HG3
|
B:GLN12
|
2.9
|
101.0
|
1.0
|
HG2
|
B:MET8
|
2.9
|
112.7
|
1.0
|
NE1
|
A:TFW96
|
2.9
|
71.3
|
1.0
|
O17
|
B:DM1201
|
3.1
|
74.7
|
1.0
|
H152
|
B:DM1201
|
3.3
|
121.6
|
1.0
|
O
|
B:MET8
|
3.3
|
65.2
|
1.0
|
CG
|
B:MET8
|
3.3
|
93.4
|
1.0
|
C17
|
B:DM1201
|
3.5
|
89.8
|
1.0
|
HG2
|
B:GLN12
|
3.6
|
101.0
|
1.0
|
CD2
|
A:TFW96
|
3.6
|
81.7
|
1.0
|
HB1
|
B:ALA11
|
3.6
|
96.3
|
1.0
|
CB
|
B:ALA11
|
3.6
|
79.8
|
1.0
|
CZ3
|
A:TFW96
|
3.6
|
79.8
|
1.0
|
CG
|
B:GLN12
|
3.6
|
83.8
|
1.0
|
HA
|
B:MET8
|
3.7
|
113.9
|
1.0
|
H
|
B:GLN12
|
3.8
|
85.9
|
1.0
|
HE21
|
B:GLN12
|
3.9
|
116.7
|
1.0
|
C16
|
B:DM1201
|
4.0
|
87.7
|
1.0
|
C15
|
B:DM1201
|
4.0
|
100.9
|
1.0
|
N
|
B:GLN12
|
4.1
|
71.2
|
1.0
|
CE3
|
A:TFW96
|
4.1
|
74.9
|
1.0
|
C18
|
B:DM1201
|
4.2
|
88.0
|
1.0
|
C
|
B:MET8
|
4.2
|
83.5
|
1.0
|
O19
|
B:DM1201
|
4.2
|
83.3
|
1.0
|
HB2
|
B:ALA11
|
4.2
|
96.3
|
1.0
|
CD1
|
A:TFW96
|
4.3
|
75.1
|
1.0
|
CA
|
B:MET8
|
4.3
|
94.5
|
1.0
|
H151
|
B:DM1201
|
4.3
|
121.6
|
1.0
|
HA
|
B:GLN12
|
4.3
|
79.6
|
1.0
|
CB
|
B:MET8
|
4.4
|
85.2
|
1.0
|
C19
|
B:DM1201
|
4.4
|
78.7
|
1.0
|
NE2
|
B:GLN12
|
4.5
|
96.8
|
1.0
|
C
|
B:ALA11
|
4.5
|
82.8
|
1.0
|
SD
|
B:MET8
|
4.5
|
94.0
|
1.0
|
CD
|
B:GLN12
|
4.5
|
66.8
|
1.0
|
CG
|
A:TFW96
|
4.6
|
76.6
|
1.0
|
CA
|
B:GLN12
|
4.6
|
65.9
|
1.0
|
CA
|
B:ALA11
|
4.6
|
66.0
|
1.0
|
CB
|
B:GLN12
|
4.7
|
80.8
|
1.0
|
FAE
|
A:TFW96
|
4.7
|
93.0
|
1.0
|
H
|
B:ALA11
|
4.9
|
86.1
|
1.0
|
HB3
|
B:MET8
|
4.9
|
102.7
|
1.0
|
C9
|
B:DM1201
|
4.9
|
99.9
|
1.0
|
HE2
|
B:MET8
|
4.9
|
105.3
|
1.0
|
|
Fluorine binding site 5 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 5 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F96
b:71.1
occ:1.00
|
FAD
|
A:TFW96
|
0.0
|
71.1
|
1.0
|
CH2
|
A:TFW96
|
1.4
|
74.5
|
1.0
|
CZ3
|
A:TFW96
|
2.4
|
79.8
|
1.0
|
CZ2
|
A:TFW96
|
2.4
|
83.1
|
1.0
|
HG21
|
B:VAL15
|
2.6
|
89.2
|
1.0
|
FAE
|
A:TFW96
|
2.7
|
93.0
|
1.0
|
HA
|
B:GLN12
|
2.7
|
79.6
|
1.0
|
FAC
|
A:TFW96
|
2.8
|
90.4
|
1.0
|
HG23
|
B:VAL15
|
3.1
|
89.2
|
1.0
|
HB1
|
B:ALA11
|
3.1
|
96.3
|
1.0
|
CG2
|
B:VAL15
|
3.3
|
73.9
|
1.0
|
N
|
B:GLN12
|
3.3
|
71.2
|
1.0
|
C
|
B:ALA11
|
3.4
|
82.8
|
1.0
|
HB3
|
B:ALA11
|
3.4
|
96.3
|
1.0
|
CA
|
B:GLN12
|
3.4
|
65.9
|
1.0
|
HO17
|
B:DM1201
|
3.5
|
90.2
|
1.0
|
O
|
B:ALA11
|
3.5
|
82.5
|
1.0
|
HG2
|
B:GLN12
|
3.5
|
101.0
|
1.0
|
C19
|
B:DM1201
|
3.5
|
78.7
|
1.0
|
HG3
|
B:GLN12
|
3.5
|
101.0
|
1.0
|
O19
|
B:DM1201
|
3.6
|
83.3
|
1.0
|
CE3
|
A:TFW96
|
3.6
|
74.9
|
1.0
|
CE2
|
A:TFW96
|
3.7
|
79.1
|
1.0
|
CB
|
B:ALA11
|
3.7
|
79.8
|
1.0
|
H
|
B:GLN12
|
3.7
|
85.9
|
1.0
|
C18
|
B:DM1201
|
3.8
|
88.0
|
1.0
|
CG
|
B:GLN12
|
3.9
|
83.8
|
1.0
|
C20
|
B:DM1201
|
3.9
|
66.9
|
1.0
|
HG22
|
B:VAL15
|
4.0
|
89.2
|
1.0
|
HB
|
B:VAL15
|
4.0
|
82.1
|
1.0
|
C17
|
B:DM1201
|
4.1
|
89.8
|
1.0
|
CD2
|
A:TFW96
|
4.1
|
81.7
|
1.0
|
CA
|
B:ALA11
|
4.2
|
66.0
|
1.0
|
O17
|
B:DM1201
|
4.2
|
74.7
|
1.0
|
CB
|
B:GLN12
|
4.2
|
80.8
|
1.0
|
CB
|
B:VAL15
|
4.3
|
68.0
|
1.0
|
C1
|
B:DM1201
|
4.4
|
66.5
|
1.0
|
H1
|
B:DM1201
|
4.4
|
80.3
|
1.0
|
C7
|
B:DM1201
|
4.4
|
102.2
|
1.0
|
HE3
|
A:TFW96
|
4.5
|
90.5
|
1.0
|
HB2
|
B:ALA11
|
4.5
|
96.3
|
1.0
|
C5
|
B:DM1201
|
4.5
|
93.1
|
1.0
|
H
|
B:VAL15
|
4.6
|
79.3
|
1.0
|
C
|
B:GLN12
|
4.6
|
75.7
|
1.0
|
HG11
|
B:VAL15
|
4.7
|
77.5
|
1.0
|
HA
|
B:ALA11
|
4.7
|
79.8
|
1.0
|
HB3
|
B:GLN12
|
4.7
|
97.5
|
1.0
|
C6
|
B:DM1201
|
4.8
|
104.5
|
1.0
|
O
|
B:MET8
|
4.8
|
65.2
|
1.0
|
O
|
B:GLN12
|
4.9
|
71.9
|
1.0
|
NE1
|
A:TFW96
|
4.9
|
71.3
|
1.0
|
HB2
|
B:GLN12
|
5.0
|
97.5
|
1.0
|
C16
|
B:DM1201
|
5.0
|
87.7
|
1.0
|
|
Fluorine binding site 6 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 6 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F96
b:93.0
occ:1.00
|
FAE
|
A:TFW96
|
0.0
|
93.0
|
1.0
|
CZ3
|
A:TFW96
|
1.4
|
79.8
|
1.0
|
CH2
|
A:TFW96
|
2.3
|
74.5
|
1.0
|
CE3
|
A:TFW96
|
2.4
|
74.9
|
1.0
|
HG21
|
B:VAL15
|
2.6
|
89.2
|
1.0
|
HE3
|
A:TFW96
|
2.7
|
90.5
|
1.0
|
FAD
|
A:TFW96
|
2.7
|
71.1
|
1.0
|
HG11
|
B:VAL15
|
3.0
|
77.5
|
1.0
|
HG11
|
A:VAL99
|
3.1
|
95.9
|
1.0
|
HB
|
B:VAL15
|
3.3
|
82.1
|
1.0
|
HA
|
B:GLN12
|
3.4
|
79.6
|
1.0
|
CG2
|
B:VAL15
|
3.5
|
73.9
|
1.0
|
CZ2
|
A:TFW96
|
3.6
|
83.1
|
1.0
|
CD2
|
A:TFW96
|
3.6
|
81.7
|
1.0
|
HG2
|
B:GLN12
|
3.7
|
101.0
|
1.0
|
CB
|
B:VAL15
|
3.7
|
68.0
|
1.0
|
H213
|
B:DM1201
|
3.7
|
130.3
|
1.0
|
CG1
|
B:VAL15
|
3.8
|
64.2
|
1.0
|
C6
|
B:DM1201
|
3.8
|
104.5
|
1.0
|
HG23
|
B:VAL15
|
3.9
|
89.2
|
1.0
|
C5
|
B:DM1201
|
4.0
|
93.1
|
1.0
|
CG1
|
A:VAL99
|
4.0
|
79.5
|
1.0
|
C7
|
B:DM1201
|
4.0
|
102.2
|
1.0
|
HG12
|
A:VAL99
|
4.0
|
95.9
|
1.0
|
HG21
|
A:VAL99
|
4.1
|
96.9
|
1.0
|
CE2
|
A:TFW96
|
4.1
|
79.1
|
1.0
|
HG22
|
B:VAL15
|
4.2
|
89.2
|
1.0
|
HG12
|
B:VAL15
|
4.2
|
77.5
|
1.0
|
C20
|
B:DM1201
|
4.2
|
66.9
|
1.0
|
O6
|
B:DM1201
|
4.2
|
104.7
|
1.0
|
HB
|
A:VAL99
|
4.2
|
95.7
|
1.0
|
C18
|
B:DM1201
|
4.3
|
88.0
|
1.0
|
C19
|
B:DM1201
|
4.4
|
78.7
|
1.0
|
CA
|
B:GLN12
|
4.4
|
65.9
|
1.0
|
HO8
|
B:DM1201
|
4.5
|
136.2
|
1.0
|
CG
|
B:GLN12
|
4.5
|
83.8
|
1.0
|
HG13
|
B:VAL15
|
4.5
|
77.5
|
1.0
|
C4
|
B:DM1201
|
4.5
|
85.9
|
1.0
|
C8
|
B:DM1201
|
4.6
|
106.6
|
1.0
|
CB
|
A:VAL99
|
4.6
|
79.3
|
1.0
|
C21
|
B:DM1201
|
4.7
|
108.1
|
1.0
|
HG13
|
A:VAL99
|
4.7
|
95.9
|
1.0
|
HG3
|
B:GLN12
|
4.7
|
101.0
|
1.0
|
FAC
|
A:TFW96
|
4.7
|
90.4
|
1.0
|
HB3
|
B:GLN12
|
4.8
|
97.5
|
1.0
|
CB
|
B:GLN12
|
4.8
|
80.8
|
1.0
|
CG2
|
A:VAL99
|
4.8
|
80.3
|
1.0
|
C1
|
B:DM1201
|
4.9
|
66.5
|
1.0
|
O8
|
B:DM1201
|
4.9
|
113.0
|
1.0
|
HD11
|
A:ILE103
|
4.9
|
117.3
|
1.0
|
O4
|
B:DM1201
|
4.9
|
95.5
|
1.0
|
CG
|
A:TFW96
|
5.0
|
76.6
|
1.0
|
O
|
B:GLN12
|
5.0
|
71.9
|
1.0
|
|
Fluorine binding site 7 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 7 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F67
b:118.5
occ:1.00
|
FAC
|
B:TFW67
|
0.0
|
118.5
|
1.0
|
CZ2
|
B:TFW67
|
1.4
|
127.5
|
1.0
|
CH2
|
B:TFW67
|
2.4
|
131.9
|
1.0
|
CE2
|
B:TFW67
|
2.4
|
114.7
|
1.0
|
FAD
|
B:TFW67
|
2.8
|
111.8
|
1.0
|
HE1
|
B:TFW67
|
2.9
|
142.8
|
1.0
|
NE1
|
B:TFW67
|
3.0
|
118.5
|
1.0
|
HD2
|
B:LYS77
|
3.1
|
109.7
|
1.0
|
HB2
|
B:LYS77
|
3.5
|
129.8
|
1.0
|
CZ3
|
B:TFW67
|
3.7
|
123.5
|
1.0
|
CD2
|
B:TFW67
|
3.7
|
130.6
|
1.0
|
CD
|
B:LYS77
|
4.0
|
91.5
|
1.0
|
HZ3
|
B:LYS77
|
4.0
|
170.5
|
1.0
|
CE3
|
B:TFW67
|
4.2
|
129.2
|
1.0
|
CD1
|
B:TFW67
|
4.3
|
113.7
|
1.0
|
CB
|
B:LYS77
|
4.4
|
107.7
|
1.0
|
HG3
|
B:LYS77
|
4.4
|
108.2
|
1.0
|
HZ2
|
B:LYS77
|
4.5
|
170.5
|
1.0
|
CG
|
B:LYS77
|
4.5
|
92.4
|
1.0
|
HD3
|
B:LYS77
|
4.5
|
109.7
|
1.0
|
NZ
|
B:LYS77
|
4.6
|
141.7
|
1.0
|
CG
|
B:TFW67
|
4.6
|
132.1
|
1.0
|
HB3
|
B:LYS77
|
4.7
|
129.8
|
1.0
|
FAE
|
B:TFW67
|
4.8
|
121.9
|
1.0
|
CE
|
B:LYS77
|
4.8
|
112.5
|
1.0
|
|
Fluorine binding site 8 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 8 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F67
b:111.8
occ:1.00
|
FAD
|
B:TFW67
|
0.0
|
111.8
|
1.0
|
CH2
|
B:TFW67
|
1.4
|
131.9
|
1.0
|
CZ2
|
B:TFW67
|
2.4
|
127.5
|
1.0
|
CZ3
|
B:TFW67
|
2.4
|
123.5
|
1.0
|
FAC
|
B:TFW67
|
2.8
|
118.5
|
1.0
|
FAE
|
B:TFW67
|
2.8
|
121.9
|
1.0
|
HB2
|
B:LYS77
|
3.3
|
129.8
|
1.0
|
CE2
|
B:TFW67
|
3.6
|
114.7
|
1.0
|
CE3
|
B:TFW67
|
3.6
|
129.2
|
1.0
|
CD2
|
B:TFW67
|
4.1
|
130.6
|
1.0
|
CB
|
B:LYS77
|
4.2
|
107.7
|
1.0
|
H
|
B:LYS77
|
4.2
|
134.9
|
1.0
|
HB3
|
B:LYS77
|
4.3
|
129.8
|
1.0
|
HD2
|
B:LYS77
|
4.3
|
109.7
|
1.0
|
HE3
|
B:TFW67
|
4.5
|
155.6
|
1.0
|
N
|
B:LYS77
|
4.6
|
112.0
|
1.0
|
HA
|
B:ARG76
|
4.7
|
138.1
|
1.0
|
NE1
|
B:TFW67
|
4.9
|
118.5
|
1.0
|
CA
|
B:LYS77
|
5.0
|
94.8
|
1.0
|
|
Fluorine binding site 9 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 9 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F67
b:121.9
occ:1.00
|
FAE
|
B:TFW67
|
0.0
|
121.9
|
1.0
|
CZ3
|
B:TFW67
|
1.4
|
123.5
|
1.0
|
CE3
|
B:TFW67
|
2.4
|
129.2
|
1.0
|
CH2
|
B:TFW67
|
2.4
|
131.9
|
1.0
|
HA
|
B:ARG76
|
2.4
|
138.1
|
1.0
|
HE3
|
B:TFW67
|
2.6
|
155.6
|
1.0
|
FAD
|
B:TFW67
|
2.8
|
111.8
|
1.0
|
CA
|
B:ARG76
|
3.0
|
114.6
|
1.0
|
H
|
B:LYS77
|
3.1
|
134.9
|
1.0
|
C
|
B:ARG76
|
3.2
|
127.2
|
1.0
|
N
|
B:ARG76
|
3.2
|
122.9
|
1.0
|
N
|
B:LYS77
|
3.2
|
112.0
|
1.0
|
O
|
B:ARG75
|
3.3
|
116.5
|
1.0
|
C
|
B:ARG75
|
3.4
|
126.2
|
1.0
|
HB3
|
B:ARG75
|
3.6
|
163.9
|
1.0
|
CD2
|
B:TFW67
|
3.6
|
130.6
|
1.0
|
CZ2
|
B:TFW67
|
3.6
|
127.5
|
1.0
|
HB2
|
B:LYS77
|
3.7
|
129.8
|
1.0
|
H
|
B:ARG76
|
3.7
|
148.0
|
1.0
|
HB2
|
B:ARG75
|
3.9
|
163.9
|
1.0
|
O
|
B:ARG76
|
4.0
|
127.8
|
1.0
|
CB
|
B:ARG75
|
4.1
|
136.1
|
1.0
|
CE2
|
B:TFW67
|
4.1
|
114.7
|
1.0
|
CA
|
B:LYS77
|
4.2
|
94.8
|
1.0
|
HA
|
B:LYS77
|
4.3
|
111.2
|
1.0
|
CB
|
B:LYS77
|
4.4
|
107.7
|
1.0
|
CA
|
B:ARG75
|
4.4
|
135.3
|
1.0
|
CB
|
B:ARG76
|
4.4
|
107.7
|
1.0
|
HG3
|
B:ARG76
|
4.5
|
169.5
|
1.0
|
HB3
|
B:LYS77
|
4.6
|
129.8
|
1.0
|
HG2
|
B:ARG76
|
4.7
|
169.5
|
1.0
|
FAC
|
B:TFW67
|
4.8
|
118.5
|
1.0
|
HB3
|
B:ARG76
|
4.8
|
129.7
|
1.0
|
HA
|
B:ARG75
|
4.8
|
162.9
|
1.0
|
CG
|
B:ARG76
|
4.8
|
140.8
|
1.0
|
CG
|
B:TFW67
|
4.9
|
132.1
|
1.0
|
|
Fluorine binding site 10 out
of 12 in 7qz7
Go back to
Fluorine Binding Sites List in 7qz7
Fluorine binding site 10 out
of 12 in the Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Transcriptional Regulator Lmrr with Bound Daunomycin and with Trp-67 and Trp-96 Replaced By 5,6,7-Trifluorotrp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F96
b:89.6
occ:1.00
|
FAC
|
B:TFW96
|
0.0
|
89.6
|
1.0
|
CZ2
|
B:TFW96
|
1.4
|
73.9
|
1.0
|
CH2
|
B:TFW96
|
2.4
|
62.2
|
1.0
|
CE2
|
B:TFW96
|
2.4
|
73.9
|
1.0
|
HG3
|
A:MET8
|
2.6
|
110.3
|
1.0
|
FAD
|
B:TFW96
|
2.7
|
73.5
|
1.0
|
HB3
|
A:ALA11
|
2.9
|
82.4
|
1.0
|
HE1
|
B:TFW96
|
2.9
|
100.7
|
1.0
|
O19
|
B:DM1201
|
3.0
|
83.3
|
1.0
|
HG2
|
A:MET8
|
3.0
|
110.3
|
1.0
|
NE1
|
B:TFW96
|
3.0
|
83.5
|
1.0
|
HG3
|
A:GLN12
|
3.0
|
72.9
|
1.0
|
CG
|
A:MET8
|
3.3
|
91.5
|
1.0
|
O17
|
B:DM1201
|
3.5
|
74.7
|
1.0
|
HB1
|
A:ALA11
|
3.6
|
82.4
|
1.0
|
CZ3
|
B:TFW96
|
3.6
|
75.7
|
1.0
|
O
|
A:MET8
|
3.6
|
70.5
|
1.0
|
HA
|
A:MET8
|
3.6
|
85.2
|
1.0
|
CB
|
A:ALA11
|
3.6
|
68.2
|
1.0
|
C19
|
B:DM1201
|
3.7
|
78.7
|
1.0
|
CD2
|
B:TFW96
|
3.7
|
82.5
|
1.0
|
CG
|
A:GLN12
|
3.9
|
60.3
|
1.0
|
HE21
|
A:GLN12
|
3.9
|
95.1
|
1.0
|
HG2
|
A:GLN12
|
4.0
|
72.9
|
1.0
|
H
|
A:GLN12
|
4.0
|
80.6
|
1.0
|
HO17
|
B:DM1201
|
4.1
|
90.2
|
1.0
|
H1
|
B:DM1201
|
4.1
|
80.3
|
1.0
|
HB2
|
A:ALA11
|
4.1
|
82.4
|
1.0
|
CE3
|
B:TFW96
|
4.2
|
64.3
|
1.0
|
C17
|
B:DM1201
|
4.2
|
89.8
|
1.0
|
C18
|
B:DM1201
|
4.2
|
88.0
|
1.0
|
CA
|
A:MET8
|
4.3
|
70.6
|
1.0
|
CB
|
A:MET8
|
4.3
|
83.2
|
1.0
|
CD1
|
B:TFW96
|
4.3
|
81.9
|
1.0
|
N
|
A:GLN12
|
4.4
|
66.7
|
1.0
|
SD
|
A:MET8
|
4.4
|
99.2
|
1.0
|
C
|
A:MET8
|
4.4
|
79.4
|
1.0
|
C20
|
B:DM1201
|
4.4
|
66.9
|
1.0
|
NE2
|
A:GLN12
|
4.4
|
78.8
|
1.0
|
HE2
|
A:MET8
|
4.6
|
151.7
|
1.0
|
CD
|
A:GLN12
|
4.6
|
58.9
|
1.0
|
C1
|
B:DM1201
|
4.6
|
66.5
|
1.0
|
CG
|
B:TFW96
|
4.6
|
79.0
|
1.0
|
FAE
|
B:TFW96
|
4.7
|
73.3
|
1.0
|
C
|
A:ALA11
|
4.8
|
57.0
|
1.0
|
HA
|
A:GLN12
|
4.8
|
71.0
|
1.0
|
CA
|
A:ALA11
|
4.8
|
59.7
|
1.0
|
HB3
|
A:MET8
|
4.9
|
100.3
|
1.0
|
HB2
|
A:MET8
|
4.9
|
100.3
|
1.0
|
CA
|
A:GLN12
|
5.0
|
58.8
|
1.0
|
CB
|
A:GLN12
|
5.0
|
61.8
|
1.0
|
|
Reference:
J.Shao,
B.P.Kuiper,
A.W.H.Thunnissen,
R.H.Cool,
L.Zhou,
C.Huang,
B.W.Dijkstra,
J.Broos.
The Role of Tryptophan in Pi Interactions in Proteins: An Experimental Approach. J.Am.Chem.Soc. V. 144 13815 2022.
ISSN: ESSN 1520-5126
PubMed: 35868012
DOI: 10.1021/JACS.2C04986
Page generated: Fri Aug 2 11:53:09 2024
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