Fluorine in PDB 7rd6: Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State

Enzymatic activity of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State

All present enzymatic activity of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State:
7.6.2.1;

Other elements in 7rd6:

The structure of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State (pdb code 7rd6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State, PDB code: 7rd6:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7rd6

Go back to Fluorine Binding Sites List in 7rd6
Fluorine binding site 1 out of 3 in the Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1201

b:55.7
occ:1.00
 F1 A:BEF1201 0.0 55.7 1.0
BE A:BEF1201 1.5 55.7 1.0
O A:ASN885 2.3 56.0 1.0
F3 A:BEF1201 2.5 55.7 1.0
F2 A:BEF1201 2.6 55.7 1.0
CA A:PRO859 3.3 58.7 1.0
CB A:LYS862 3.4 52.3 1.0
CD A:LYS862 3.4 52.3 1.0
C A:ASN885 3.5 56.0 1.0
N A:PRO859 3.8 58.7 1.0
CB A:PRO859 3.9 58.7 1.0
CG A:LYS862 3.9 52.3 1.0
CA A:ASP886 4.0 51.2 1.0
CG A:PRO859 4.0 58.7 1.0
CD A:PRO859 4.1 58.7 1.0
N A:ASP886 4.2 51.2 1.0
C A:PRO859 4.3 58.7 1.0
CB A:ASP886 4.3 51.2 1.0
O A:CYS857 4.3 62.7 1.0
O A:THR858 4.3 60.7 1.0
C A:THR858 4.3 60.7 1.0
O A:PRO859 4.4 58.7 1.0
CA A:ASN885 4.6 56.0 1.0
CE A:LYS862 4.7 52.3 1.0
CA A:LYS862 4.7 52.3 1.0
CB A:ASN885 4.8 56.0 1.0
N A:LYS862 4.8 52.3 1.0

Fluorine binding site 2 out of 3 in 7rd6

Go back to Fluorine Binding Sites List in 7rd6
Fluorine binding site 2 out of 3 in the Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1201

b:55.7
occ:1.00
 F2 A:BEF1201 0.0 55.7 1.0
BE A:BEF1201 1.6 55.7 1.0
F3 A:BEF1201 2.5 55.7 1.0
F1 A:BEF1201 2.6 55.7 1.0
CD A:LYS862 3.2 52.3 1.0
O A:LEU773 3.2 50.2 1.0
O A:ASN885 3.4 56.0 1.0
OD2 A:ASP503 3.6 50.8 1.0
CG A:ASP503 3.6 50.8 1.0
CB A:ASP886 3.7 51.2 1.0
CE A:LYS862 3.8 52.3 1.0
OD1 A:ASP503 3.9 50.8 1.0
ND2 A:ASN885 3.9 56.0 1.0
C A:ASN885 4.1 56.0 1.0
C A:LEU773 4.1 50.2 1.0
CB A:ASP503 4.2 50.8 1.0
CA A:THR774 4.3 56.7 1.0
CA A:ASP886 4.3 51.2 1.0
CG A:ASN885 4.3 56.0 1.0
CG A:LYS862 4.3 52.3 1.0
OD2 A:ASP886 4.4 51.2 1.0
N A:ASP886 4.5 51.2 1.0
N A:THR774 4.5 56.7 1.0
CG A:ASP886 4.6 51.2 1.0
CB A:LYS862 4.6 52.3 1.0
CB A:ASN885 4.7 56.0 1.0
CA A:ASP503 4.8 50.8 1.0
N A:GLY775 4.9 62.6 1.0
OD1 A:ASN885 4.9 56.0 1.0
C A:THR774 5.0 56.7 1.0
NZ A:LYS862 5.0 52.3 1.0

Fluorine binding site 3 out of 3 in 7rd6

Go back to Fluorine Binding Sites List in 7rd6
Fluorine binding site 3 out of 3 in the Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1201

b:55.7
occ:1.00
 F3 A:BEF1201 0.0 55.7 1.0
BE A:BEF1201 1.5 55.7 1.0
F2 A:BEF1201 2.5 55.7 1.0
F1 A:BEF1201 2.5 55.7 1.0
O A:CYS857 3.2 62.7 1.0
C A:THR774 3.4 56.7 1.0
N A:GLY775 3.4 62.6 1.0
CA A:THR774 3.4 56.7 1.0
N A:THR774 3.6 56.7 1.0
O A:LEU773 3.7 50.2 1.0
C A:LEU773 3.8 50.2 1.0
CB A:CYS857 4.0 62.7 1.0
O A:THR774 4.1 56.7 1.0
O A:ASN885 4.1 56.0 1.0
C A:CYS857 4.1 62.7 1.0
CA A:GLY775 4.2 62.6 1.0
CD A:LYS862 4.3 52.3 1.0
CB A:LYS862 4.3 52.3 1.0
CA A:CYS857 4.6 62.7 1.0
CB A:LEU773 4.6 50.2 1.0
CG A:LYS862 4.7 52.3 1.0
CA A:LEU773 4.8 50.2 1.0
O A:THR858 4.8 60.7 1.0
N A:CYS857 4.8 62.7 1.0
C A:THR858 4.9 60.7 1.0
CB A:THR774 4.9 56.7 1.0
N A:PRO859 5.0 58.7 1.0

Reference:

L.Bai, B.K.Jain, Q.You, H.D.Duan, T.R.Graham, H.Li. Structure of the S. Cerevisiae P4B Atpase Lipid Flippase in the E2P State To Be Published.
Page generated: Fri Aug 2 12:01:00 2024

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