Fluorine in PDB 7rfd: E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Enzymatic activity of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
All present enzymatic activity of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe:
5.2.1.8;
Protein crystallography data
The structure of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe, PDB code: 7rfd
was solved by
R.L.Frkic,
G.Otting,
C.J.Jackson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.01 /
1.35
|
Space group
|
P 61
|
Cell size a, b, c (Å), α, β, γ (°)
|
34.891,
34.891,
210.047,
90,
90,
120
|
R / Rfree (%)
|
12.2 /
14.9
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
(pdb code 7rfd). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe, PDB code: 7rfd:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 7rfd
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Fluorine Binding Sites List in 7rfd
Fluorine binding site 1 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F27
b:20.6
occ:1.00
|
F19
|
A:55I27
|
0.0
|
20.6
|
1.0
|
C13
|
A:55I27
|
1.3
|
17.1
|
1.0
|
F20
|
A:55I27
|
2.1
|
21.4
|
1.0
|
F21
|
A:55I27
|
2.2
|
15.2
|
1.0
|
CZ
|
A:55I27
|
2.4
|
14.1
|
1.0
|
CE1
|
A:55I27
|
3.2
|
12.7
|
1.0
|
CE2
|
A:55I27
|
3.2
|
13.0
|
1.0
|
SG
|
A:CYS31
|
3.5
|
10.5
|
1.0
|
CG1
|
A:VAL2
|
3.7
|
13.9
|
1.0
|
CG1
|
A:VAL160
|
3.8
|
15.9
|
1.0
|
CG2
|
A:VAL160
|
4.2
|
13.6
|
1.0
|
F20
|
A:55I98
|
4.2
|
24.1
|
1.0
|
F21
|
A:55I98
|
4.3
|
25.3
|
1.0
|
CD1
|
A:55I27
|
4.4
|
10.4
|
1.0
|
CD2
|
A:55I27
|
4.5
|
11.1
|
1.0
|
CD2
|
A:TYR36
|
4.5
|
9.3
|
1.0
|
C13
|
A:55I98
|
4.5
|
21.8
|
1.0
|
CZ
|
A:55I98
|
4.6
|
17.5
|
1.0
|
CD1
|
A:ILE13
|
4.6
|
9.9
|
1.0
|
CB
|
A:VAL160
|
4.6
|
13.4
|
1.0
|
CB
|
A:VAL2
|
4.7
|
13.7
|
1.0
|
CE2
|
A:TYR36
|
4.7
|
8.4
|
1.0
|
CB
|
A:ALA4
|
4.8
|
9.7
|
1.0
|
CE2
|
A:55I98
|
4.8
|
17.8
|
1.0
|
CG
|
A:55I27
|
4.9
|
9.6
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 7rfd
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Fluorine Binding Sites List in 7rfd
Fluorine binding site 2 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F27
b:21.4
occ:1.00
|
F20
|
A:55I27
|
0.0
|
21.4
|
1.0
|
C13
|
A:55I27
|
1.4
|
17.1
|
1.0
|
F19
|
A:55I27
|
2.1
|
20.6
|
1.0
|
F21
|
A:55I27
|
2.2
|
15.2
|
1.0
|
CZ
|
A:55I27
|
2.4
|
14.1
|
1.0
|
CE2
|
A:55I27
|
2.7
|
13.0
|
1.0
|
CD1
|
A:ILE13
|
3.3
|
9.9
|
1.0
|
CG1
|
A:VAL2
|
3.5
|
13.9
|
1.0
|
CE1
|
A:55I27
|
3.6
|
12.7
|
1.0
|
CG2
|
A:ILE13
|
3.7
|
9.7
|
1.0
|
CB
|
A:VAL2
|
3.9
|
13.7
|
1.0
|
CD2
|
A:LEU83
|
4.0
|
11.1
|
1.0
|
CB
|
A:ILE13
|
4.0
|
9.7
|
1.0
|
CD2
|
A:55I27
|
4.0
|
11.1
|
1.0
|
CG1
|
A:ILE13
|
4.2
|
9.7
|
1.0
|
CG2
|
A:VAL2
|
4.5
|
15.1
|
1.0
|
CD1
|
A:55I27
|
4.7
|
10.4
|
1.0
|
SG
|
A:CYS31
|
4.7
|
10.5
|
1.0
|
CG
|
A:55I27
|
4.9
|
9.6
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 7rfd
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Fluorine Binding Sites List in 7rfd
Fluorine binding site 3 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F27
b:15.2
occ:1.00
|
F21
|
A:55I27
|
0.0
|
15.2
|
1.0
|
C13
|
A:55I27
|
1.4
|
17.1
|
1.0
|
F19
|
A:55I27
|
2.2
|
20.6
|
1.0
|
F20
|
A:55I27
|
2.2
|
21.4
|
1.0
|
CZ
|
A:55I27
|
2.4
|
14.1
|
1.0
|
CE1
|
A:55I27
|
2.9
|
12.7
|
1.0
|
CZ
|
A:55I98
|
3.3
|
17.5
|
1.0
|
CE1
|
A:55I98
|
3.3
|
15.6
|
1.0
|
CD2
|
A:LEU83
|
3.3
|
11.1
|
1.0
|
F21
|
A:55I98
|
3.4
|
25.3
|
1.0
|
CE2
|
A:55I27
|
3.6
|
13.0
|
1.0
|
C13
|
A:55I98
|
3.7
|
21.8
|
1.0
|
CE2
|
A:55I98
|
3.8
|
17.8
|
1.0
|
CD1
|
A:55I98
|
3.8
|
11.7
|
1.0
|
CD1
|
A:ILE13
|
3.9
|
9.9
|
1.0
|
F20
|
A:55I98
|
4.1
|
24.1
|
1.0
|
CD1
|
A:55I27
|
4.2
|
10.4
|
1.0
|
CD2
|
A:55I98
|
4.3
|
12.6
|
1.0
|
CG
|
A:55I98
|
4.3
|
10.4
|
1.0
|
CD2
|
A:55I27
|
4.7
|
11.1
|
1.0
|
CG
|
A:LEU83
|
4.8
|
10.1
|
1.0
|
CG
|
A:55I27
|
5.0
|
9.6
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 7rfd
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Fluorine Binding Sites List in 7rfd
Fluorine binding site 4 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F98
b:28.1
occ:1.00
|
F19
|
A:55I98
|
0.0
|
28.1
|
1.0
|
C13
|
A:55I98
|
1.4
|
21.8
|
1.0
|
F21
|
A:55I98
|
2.1
|
25.3
|
1.0
|
F20
|
A:55I98
|
2.1
|
24.1
|
1.0
|
CZ
|
A:55I98
|
2.4
|
17.5
|
1.0
|
CE1
|
A:55I98
|
3.1
|
15.6
|
1.0
|
CZ
|
A:PHE41
|
3.3
|
13.9
|
1.0
|
CE2
|
A:55I98
|
3.3
|
17.8
|
1.0
|
CE1
|
A:PHE41
|
3.5
|
12.3
|
1.0
|
CD1
|
A:ILE157
|
3.6
|
15.3
|
1.0
|
CG1
|
A:ILE157
|
3.7
|
12.8
|
1.0
|
CE2
|
A:PHE41
|
3.9
|
12.8
|
1.0
|
N
|
A:GLY53
|
4.2
|
14.6
|
1.0
|
CD1
|
A:PHE41
|
4.3
|
10.9
|
1.0
|
CD1
|
A:55I98
|
4.4
|
11.7
|
1.0
|
CA
|
A:GLY52
|
4.4
|
13.7
|
1.0
|
C
|
A:GLY52
|
4.4
|
14.1
|
1.0
|
CD2
|
A:55I98
|
4.5
|
12.6
|
1.0
|
CD2
|
A:PHE41
|
4.6
|
14.4
|
1.0
|
CG
|
A:PHE41
|
4.8
|
11.0
|
1.0
|
N
|
A:GLY52
|
4.8
|
9.9
|
1.0
|
CB
|
A:ILE157
|
4.8
|
11.2
|
1.0
|
CA
|
A:GLY53
|
4.9
|
17.9
|
1.0
|
CG
|
A:55I98
|
5.0
|
10.4
|
1.0
|
CG2
|
A:ILE157
|
5.0
|
12.5
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 7rfd
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Fluorine Binding Sites List in 7rfd
Fluorine binding site 5 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F98
b:24.1
occ:1.00
|
F20
|
A:55I98
|
0.0
|
24.1
|
1.0
|
C13
|
A:55I98
|
1.3
|
21.8
|
1.0
|
F19
|
A:55I98
|
2.1
|
28.1
|
1.0
|
F21
|
A:55I98
|
2.1
|
25.3
|
1.0
|
CZ
|
A:55I98
|
2.4
|
17.5
|
1.0
|
CE2
|
A:55I98
|
2.9
|
17.8
|
1.0
|
CE1
|
A:55I98
|
3.6
|
15.6
|
1.0
|
CG
|
A:TYR36
|
4.0
|
7.5
|
1.0
|
CB
|
A:TYR36
|
4.0
|
8.6
|
1.0
|
F21
|
A:55I27
|
4.1
|
15.2
|
1.0
|
CG1
|
A:ILE157
|
4.1
|
12.8
|
1.0
|
CD1
|
A:TYR36
|
4.2
|
8.5
|
1.0
|
F19
|
A:55I27
|
4.2
|
20.6
|
1.0
|
CG2
|
A:ILE157
|
4.2
|
12.5
|
1.0
|
CD2
|
A:55I98
|
4.2
|
12.6
|
1.0
|
CG2
|
A:VAL160
|
4.4
|
13.6
|
1.0
|
CD2
|
A:TYR36
|
4.5
|
9.3
|
1.0
|
CD1
|
A:ILE157
|
4.5
|
15.3
|
1.0
|
CB
|
A:ILE157
|
4.6
|
11.2
|
1.0
|
CB
|
A:ALA4
|
4.7
|
9.7
|
1.0
|
C13
|
A:55I27
|
4.7
|
17.1
|
1.0
|
CE1
|
A:TYR36
|
4.7
|
8.1
|
1.0
|
CD1
|
A:55I98
|
4.8
|
11.7
|
1.0
|
N
|
A:GLY53
|
4.8
|
14.6
|
1.0
|
CA
|
A:GLY53
|
4.9
|
17.9
|
1.0
|
OG1
|
A:THR39
|
5.0
|
14.1
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 7rfd
Go back to
Fluorine Binding Sites List in 7rfd
Fluorine binding site 6 out
of 6 in the E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of E. Coli Peptidyl-Prolyl Cis-Trans Isomerase, Mutant PHE4ALA PHE27CF3- Phe/PHE98CF3-Phe within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F98
b:25.3
occ:1.00
|
F21
|
A:55I98
|
0.0
|
25.3
|
1.0
|
C13
|
A:55I98
|
1.3
|
21.8
|
1.0
|
F19
|
A:55I98
|
2.1
|
28.1
|
1.0
|
F20
|
A:55I98
|
2.1
|
24.1
|
1.0
|
CZ
|
A:55I98
|
2.3
|
17.5
|
1.0
|
CE1
|
A:55I98
|
2.7
|
15.6
|
1.0
|
F21
|
A:55I27
|
3.4
|
15.2
|
1.0
|
CE2
|
A:55I98
|
3.6
|
17.8
|
1.0
|
CZ
|
A:PHE41
|
3.8
|
13.9
|
1.0
|
CB
|
A:ALA4
|
3.8
|
9.7
|
1.0
|
CD1
|
A:55I98
|
4.1
|
11.7
|
1.0
|
F19
|
A:55I27
|
4.3
|
20.6
|
1.0
|
CE1
|
A:PHE41
|
4.4
|
12.3
|
1.0
|
C13
|
A:55I27
|
4.4
|
17.1
|
1.0
|
CG1
|
A:ILE157
|
4.5
|
12.8
|
1.0
|
CE2
|
A:PHE41
|
4.6
|
12.8
|
1.0
|
CD2
|
A:55I98
|
4.7
|
12.6
|
1.0
|
CG
|
A:55I98
|
5.0
|
10.4
|
1.0
|
|
Reference:
R.L.Frkic,
C.J.Jackson,
G.Otting,
H.Qianzhu,
E.Habel,
T.Huber.
Through-Space Scalar 19F-19F Couplings Between Fluorinated Non-Canonical Amino Acids For the Detection of Specific Contacts in Proteins To Be Published.
Page generated: Fri Aug 2 12:04:47 2024
|