Fluorine in PDB 7t23: E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4

Enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4

All present enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101; 3.6.4.12;

Other elements in 7t23:

The structure of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:

Aluminium (Al) 5 atoms
Magnesium (Mg) 5 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Fluorine atom in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 (pdb code 7t23). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 20 binding sites of Fluorine where determined in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 7t23:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 20 in 7t23

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Fluorine binding site 1 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:119.3
occ:1.00
 F1 B:ALF1002 0.0 119.3 1.0
AL B:ALF1002 1.8 119.3 1.0
MG B:MG1003 2.0 119.3 1.0
O2A B:ADP1001 2.2 128.6 1.0
F3 B:ALF1002 2.5 119.3 1.0
F4 B:ALF1002 2.6 119.3 1.0
O2B B:ADP1001 2.7 128.6 1.0
O3B B:ADP1001 2.9 128.6 1.0
OE2 B:GLU262 2.9 130.9 1.0
O3A B:ADP1001 3.0 128.6 1.0
PB B:ADP1001 3.0 128.6 1.0
PA B:ADP1001 3.1 128.6 1.0
F2 B:ALF1002 3.6 119.3 1.0
CD B:GLU262 3.8 130.9 1.0
OE1 B:GLU262 4.0 130.9 1.0
O1A B:ADP1001 4.0 128.6 1.0
OG1 B:THR238 4.0 127.9 1.0
O5' B:ADP1001 4.3 128.6 1.0
O1B B:ADP1001 4.5 128.6 1.0
NE A:ARG442 4.5 143.2 1.0
CD A:ARG442 4.7 143.2 1.0
CB B:THR238 4.8 127.9 1.0
CG A:ARG442 4.8 143.2 1.0
NH1 B:ARG271 4.9 136.2 1.0
CZ A:ARG442 4.9 143.2 1.0

Fluorine binding site 2 out of 20 in 7t23

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Fluorine binding site 2 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:119.3
occ:1.00
 F2 B:ALF1002 0.0 119.3 1.0
AL B:ALF1002 1.8 119.3 1.0
F4 B:ALF1002 2.5 119.3 1.0
F3 B:ALF1002 2.5 119.3 1.0
NE2 B:GLN384 2.7 116.9 1.0
O2B B:ADP1001 2.7 128.6 1.0
CD B:GLN384 3.3 116.9 1.0
OE2 B:GLU262 3.3 130.9 1.0
F1 B:ALF1002 3.6 119.3 1.0
CG B:GLN384 3.9 116.9 1.0
OE1 B:GLN384 4.0 116.9 1.0
PB B:ADP1001 4.1 128.6 1.0
CD B:GLU262 4.2 130.9 1.0
MG B:MG1003 4.2 119.3 1.0
NZ B:LYS237 4.2 131.7 1.0
CE B:LYS237 4.3 131.7 1.0
OE1 B:GLU262 4.5 130.9 1.0
O A:GLN410 4.5 137.2 1.0
O3B B:ADP1001 4.5 128.6 1.0
CA B:PRO233 4.6 131.2 1.0
CB B:PRO233 4.8 131.2 1.0
NZ A:LYS440 4.8 146.4 1.0
CE2 B:TYR344 4.9 131.6 1.0

Fluorine binding site 3 out of 20 in 7t23

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Fluorine binding site 3 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:119.3
occ:1.00
 F3 B:ALF1002 0.0 119.3 1.0
AL B:ALF1002 1.8 119.3 1.0
F1 B:ALF1002 2.5 119.3 1.0
F2 B:ALF1002 2.5 119.3 1.0
O2B B:ADP1001 2.7 128.6 1.0
NZ A:LYS440 2.9 146.4 1.0
CE A:LYS440 3.4 146.4 1.0
OE2 B:GLU262 3.5 130.9 1.0
F4 B:ALF1002 3.6 119.3 1.0
PB B:ADP1001 3.9 128.6 1.0
O3A B:ADP1001 4.0 128.6 1.0
N B:SER234 4.1 131.5 1.0
O2A B:ADP1001 4.2 128.6 1.0
NE A:ARG442 4.2 143.2 1.0
MG B:MG1003 4.2 119.3 1.0
CB B:PRO233 4.3 131.2 1.0
CA B:PRO233 4.3 131.2 1.0
O A:GLN410 4.4 137.2 1.0
NH2 A:ARG442 4.4 143.2 1.0
CZ A:ARG442 4.6 143.2 1.0
O3B B:ADP1001 4.6 128.6 1.0
CD A:LYS440 4.7 146.4 1.0
C B:PRO233 4.7 131.2 1.0
NE2 B:GLN384 4.8 116.9 1.0
CD B:GLU262 4.8 130.9 1.0
PA B:ADP1001 4.8 128.6 1.0
O A:GLU409 5.0 128.1 1.0
CD A:ARG442 5.0 143.2 1.0

Fluorine binding site 4 out of 20 in 7t23

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Fluorine binding site 4 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F1002

b:119.3
occ:1.00
 F4 B:ALF1002 0.0 119.3 1.0
AL B:ALF1002 1.8 119.3 1.0
MG B:MG1003 2.0 119.3 1.0
F2 B:ALF1002 2.5 119.3 1.0
F1 B:ALF1002 2.6 119.3 1.0
OE2 B:GLU262 2.6 130.9 1.0
OE1 B:GLU262 2.7 130.9 1.0
O2B B:ADP1001 2.7 128.6 1.0
O3B B:ADP1001 2.8 128.6 1.0
OG1 B:THR238 3.0 127.9 1.0
CD B:GLU262 3.0 130.9 1.0
PB B:ADP1001 3.3 128.6 1.0
F3 B:ALF1002 3.6 119.3 1.0
CE B:LYS237 3.8 131.7 1.0
CB B:THR238 4.3 127.9 1.0
O3A B:ADP1001 4.4 128.6 1.0
NZ B:LYS237 4.4 131.7 1.0
O2A B:ADP1001 4.4 128.6 1.0
O1B B:ADP1001 4.5 128.6 1.0
CG B:GLU262 4.5 130.9 1.0
N B:THR238 4.6 127.9 1.0
OD1 B:ASP343 4.6 133.9 1.0
NE2 B:GLN384 4.7 116.9 1.0
CB B:LYS237 4.8 131.7 1.0
PA B:ADP1001 4.8 128.6 1.0
CD2 B:TYR344 5.0 131.6 1.0

Fluorine binding site 5 out of 20 in 7t23

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Fluorine binding site 5 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1002

b:107.6
occ:1.00
 F1 C:ALF1002 0.0 107.6 1.0
AL C:ALF1002 1.8 107.6 1.0
MG C:MG1003 2.0 107.6 1.0
O3A C:ADP1001 2.3 119.5 1.0
F3 C:ALF1002 2.5 107.6 1.0
F4 C:ALF1002 2.6 107.6 1.0
O2B C:ADP1001 2.7 119.5 1.0
O2A C:ADP1001 2.7 119.5 1.0
PB C:ADP1001 2.8 119.5 1.0
O3B C:ADP1001 2.9 119.5 1.0
OE2 C:GLU262 3.0 110.4 1.0
PA C:ADP1001 3.0 119.5 1.0
F2 C:ALF1002 3.6 107.6 1.0
CD C:GLU262 3.8 110.4 1.0
O1A C:ADP1001 3.8 119.5 1.0
OE1 C:GLU262 3.9 110.4 1.0
OG1 C:THR238 4.0 120.6 1.0
O1B C:ADP1001 4.2 119.5 1.0
O5' C:ADP1001 4.3 119.5 1.0
NZ B:LYS440 4.3 132.1 1.0
CE B:LYS440 4.5 132.1 1.0
N C:SER234 4.5 118.9 1.0
CB C:THR238 4.8 120.6 1.0
CA C:SER234 4.8 118.9 1.0
NH2 C:ARG271 4.9 126.8 1.0
CG B:ARG442 4.9 134.4 1.0
NH1 C:ARG271 5.0 126.8 1.0

Fluorine binding site 6 out of 20 in 7t23

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Fluorine binding site 6 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1002

b:107.6
occ:1.00
 F2 C:ALF1002 0.0 107.6 1.0
AL C:ALF1002 1.8 107.6 1.0
NE2 C:GLN384 2.2 109.2 1.0
F4 C:ALF1002 2.5 107.6 1.0
F3 C:ALF1002 2.5 107.6 1.0
O2B C:ADP1001 2.7 119.5 1.0
CD C:GLN384 3.3 109.2 1.0
OE2 C:GLU262 3.4 110.4 1.0
F1 C:ALF1002 3.6 107.6 1.0
OE1 C:GLN384 3.8 109.2 1.0
PB C:ADP1001 4.1 119.5 1.0
CD C:GLU262 4.2 110.4 1.0
CA C:PRO233 4.2 115.7 1.0
MG C:MG1003 4.2 107.6 1.0
CE C:LYS237 4.2 121.2 1.0
NZ C:LYS237 4.2 121.2 1.0
CG C:GLN384 4.2 109.2 1.0
NZ B:LYS440 4.4 132.1 1.0
OE1 C:GLU262 4.4 110.4 1.0
CB C:PRO233 4.5 115.7 1.0
O3B C:ADP1001 4.6 119.5 1.0
O B:GLN410 4.6 124.8 1.0
N C:SER234 4.7 118.9 1.0
O3A C:ADP1001 4.8 119.5 1.0
CA B:GLN410 4.8 124.8 1.0
CB B:GLN410 4.9 124.8 1.0

Fluorine binding site 7 out of 20 in 7t23

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Fluorine binding site 7 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1002

b:107.6
occ:1.00
 F3 C:ALF1002 0.0 107.6 1.0
AL C:ALF1002 1.8 107.6 1.0
NZ B:LYS440 2.4 132.1 1.0
F1 C:ALF1002 2.5 107.6 1.0
F2 C:ALF1002 2.5 107.6 1.0
O2B C:ADP1001 2.7 119.5 1.0
CE B:LYS440 3.0 132.1 1.0
N C:SER234 3.4 118.9 1.0
O3A C:ADP1001 3.5 119.5 1.0
OE2 C:GLU262 3.6 110.4 1.0
F4 C:ALF1002 3.6 107.6 1.0
PB C:ADP1001 3.8 119.5 1.0
CA C:PRO233 4.0 115.7 1.0
NE2 C:GLN384 4.0 109.2 1.0
O B:GLN410 4.1 124.8 1.0
CB C:PRO233 4.1 115.7 1.0
C C:PRO233 4.1 115.7 1.0
CA C:SER234 4.1 118.9 1.0
CD B:LYS440 4.2 132.1 1.0
MG C:MG1003 4.2 107.6 1.0
OG C:SER234 4.3 118.9 1.0
O3B C:ADP1001 4.6 119.5 1.0
O2A C:ADP1001 4.7 119.5 1.0
CA B:GLN410 4.8 124.8 1.0
CD C:GLU262 4.8 110.4 1.0
PA C:ADP1001 4.8 119.5 1.0
CB C:SER234 4.8 118.9 1.0
C B:GLN410 4.8 124.8 1.0
O1B C:ADP1001 4.9 119.5 1.0
O B:GLU409 4.9 120.8 1.0

Fluorine binding site 8 out of 20 in 7t23

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Fluorine binding site 8 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1002

b:107.6
occ:1.00
 F4 C:ALF1002 0.0 107.6 1.0
AL C:ALF1002 1.8 107.6 1.0
MG C:MG1003 2.0 107.6 1.0
F2 C:ALF1002 2.5 107.6 1.0
F1 C:ALF1002 2.6 107.6 1.0
OE1 C:GLU262 2.6 110.4 1.0
OE2 C:GLU262 2.7 110.4 1.0
O2B C:ADP1001 2.7 119.5 1.0
O3B C:ADP1001 2.8 119.5 1.0
OG1 C:THR238 2.9 120.6 1.0
CD C:GLU262 3.0 110.4 1.0
PB C:ADP1001 3.3 119.5 1.0
F3 C:ALF1002 3.6 107.6 1.0
O3A C:ADP1001 4.0 119.5 1.0
CE C:LYS237 4.0 121.2 1.0
CB C:THR238 4.2 120.6 1.0
N C:THR238 4.4 120.6 1.0
OD1 C:ASP343 4.5 118.7 1.0
CG C:GLU262 4.5 110.4 1.0
CB C:LYS237 4.6 121.2 1.0
NE2 C:GLN384 4.6 109.2 1.0
O1B C:ADP1001 4.6 119.5 1.0
NZ C:LYS237 4.7 121.2 1.0
PA C:ADP1001 4.9 119.5 1.0
CA C:THR238 4.9 120.6 1.0
O2A C:ADP1001 5.0 119.5 1.0

Fluorine binding site 9 out of 20 in 7t23

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Fluorine binding site 9 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1002

b:114.2
occ:1.00
 F1 D:ALF1002 0.0 114.2 1.0
AL D:ALF1002 1.8 114.2 1.0
MG D:MG1003 2.0 114.2 1.0
F3 D:ALF1002 2.5 114.2 1.0
OE2 D:GLU262 2.5 111.2 1.0
F4 D:ALF1002 2.6 114.2 1.0
O2B D:ADP1001 2.7 124.8 1.0
O3B D:ADP1001 2.9 124.8 1.0
O2A D:ADP1001 3.0 124.8 1.0
PB D:ADP1001 3.0 124.8 1.0
O3A D:ADP1001 3.0 124.8 1.0
O1A D:ADP1001 3.0 124.8 1.0
PA D:ADP1001 3.1 124.8 1.0
CD D:GLU262 3.4 111.2 1.0
F2 D:ALF1002 3.6 114.2 1.0
OE1 D:GLU262 3.6 111.2 1.0
OG1 D:THR238 4.0 117.7 1.0
NZ C:LYS440 4.3 125.2 1.0
CE C:LYS440 4.4 125.2 1.0
O1B D:ADP1001 4.5 124.8 1.0
CG D:GLU262 4.6 111.2 1.0
O5' D:ADP1001 4.7 124.8 1.0
CB D:THR238 4.8 117.7 1.0

Fluorine binding site 10 out of 20 in 7t23

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Fluorine binding site 10 out of 20 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F1002

b:114.2
occ:1.00
 F2 D:ALF1002 0.0 114.2 1.0
AL D:ALF1002 1.8 114.2 1.0
F4 D:ALF1002 2.5 114.2 1.0
F3 D:ALF1002 2.5 114.2 1.0
O2B D:ADP1001 2.7 124.8 1.0
NE2 D:GLN384 2.8 111.8 1.0
CD D:GLN384 3.5 111.8 1.0
OE2 D:GLU262 3.5 111.2 1.0
NZ D:LYS237 3.5 119.5 1.0
CE D:LYS237 3.6 119.5 1.0
F1 D:ALF1002 3.6 114.2 1.0
CG D:GLN384 3.8 111.8 1.0
OE1 D:GLU262 4.1 111.2 1.0
PB D:ADP1001 4.1 124.8 1.0
CD D:GLU262 4.2 111.2 1.0
MG D:MG1003 4.2 114.2 1.0
OE1 D:GLN384 4.3 111.8 1.0
O3B D:ADP1001 4.6 124.8 1.0
CA D:PRO233 4.7 112.8 1.0
NZ C:LYS440 4.8 125.2 1.0
CD D:LYS237 4.9 119.5 1.0
O3A D:ADP1001 5.0 124.8 1.0

Reference:

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Wed Apr 5 01:08:14 2023

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