Fluorine in PDB 7t3c: GATOR1-Rag-Ragulator - Dual Complex

The structure of GATOR1-Rag-Ragulator - Dual Complex also contains other interesting chemical elements:

Aluminium

(Al)

3 atoms

The binding sites of Fluorine atom in the GATOR1-Rag-Ragulator - Dual Complex (pdb code 7t3c). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 9 binding sites of Fluorine where determined in the GATOR1-Rag-Ragulator - Dual Complex, PDB code: 7t3c:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Fluorine binding site 1 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:224.5 occ:1.00 F1 D:AF3502 0.0 224.5 1.0 AL D:AF3502 1.7 224.5 1.0 NE2 D:GLN66 2.4 230.5 1.0 F2 D:AF3502 2.9 224.5 1.0 F3 D:AF3502 3.0 224.5 1.0 O D:THR42 3.0 216.1 1.0 CD D:GLN66 3.1 230.5 1.0 OE1 D:GLN66 3.2 230.5 1.0 O2B D:GDP501 3.4 220.4 1.0 N D:THR42 3.5 216.1 1.0 CZ B:PHE15 3.8 232.5 1.0 O3B D:GDP501 3.9 220.4 1.0 C D:THR42 3.9 216.1 1.0 CA D:ALA41 4.1 239.7 1.0 CB D:ALA41 4.1 239.7 1.0 NH1 B:ARG78 4.2 207.6 1.0 CE2 B:PHE15 4.3 232.5 1.0 PB D:GDP501 4.3 220.4 1.0 C D:ALA41 4.3 239.7 1.0 OG1 D:THR42 4.3 216.1 1.0 CA D:THR42 4.3 216.1 1.0 CZ B:ARG78 4.5 207.6 1.0 CG D:GLN66 4.5 230.5 1.0 CG2 D:ILE43 4.6 253.6 1.0 NH2 B:ARG78 4.7 207.6 1.0 CE1 B:PHE15 5.0 232.5 1.0 N D:ILE43 5.0 253.6 1.0 CB D:THR42 5.0 216.1 1.0

Fluorine binding site 2 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:224.5 occ:1.00 F2 D:AF3502 0.0 224.5 1.0 AL D:AF3502 1.7 224.5 1.0 O2B D:GDP501 2.5 220.4 1.0 N D:GLY65 2.9 243.3 1.0 F3 D:AF3502 2.9 224.5 1.0 F1 D:AF3502 2.9 224.5 1.0 NE2 D:GLN66 3.1 230.5 1.0 OE1 D:GLN66 3.2 230.5 1.0 PB D:GDP501 3.2 220.4 1.0 CA D:GLY65 3.2 243.3 1.0 O3B D:GDP501 3.3 220.4 1.0 CD D:GLN66 3.4 230.5 1.0 O1B D:GDP501 3.5 220.4 1.0 C D:GLY65 3.6 243.3 1.0 OG D:SER16 3.7 251.4 1.0 N D:GLN66 3.7 230.5 1.0 NZ D:LYS20 3.8 202.9 1.0 CA D:SER16 3.8 251.4 1.0 C D:GLY64 4.0 257.2 1.0 O D:THR42 4.1 216.1 1.0 CB D:SER16 4.2 251.4 1.0 O D:GLY65 4.4 243.3 1.0 NH1 B:ARG78 4.4 207.6 1.0 O D:LYS15 4.4 244.6 1.0 CA D:GLY64 4.5 257.2 1.0 N D:SER16 4.5 251.4 1.0 OG1 D:THR42 4.6 216.1 1.0 N D:GLY17 4.6 235.8 1.0 C D:LYS15 4.7 244.6 1.0 CA D:GLN66 4.7 230.5 1.0 O3A D:GDP501 4.7 220.4 1.0 CG D:GLN66 4.8 230.5 1.0 C D:SER16 4.8 251.4 1.0 CE D:LYS20 4.9 202.9 1.0 O D:GLY64 5.0 257.2 1.0

Fluorine binding site 3 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:F502 b:224.5 occ:1.00 F3 D:AF3502 0.0 224.5 1.0 AL D:AF3502 1.7 224.5 1.0 O3B D:GDP501 2.3 220.4 1.0 OE1 D:GLN66 2.6 230.5 1.0 NH1 B:ARG78 2.6 207.6 1.0 F2 D:AF3502 2.9 224.5 1.0 F1 D:AF3502 3.0 224.5 1.0 N D:GLY17 3.2 235.8 1.0 PB D:GDP501 3.5 220.4 1.0 CD D:GLN66 3.6 230.5 1.0 CB D:SER16 3.7 251.4 1.0 OG D:SER16 3.7 251.4 1.0 CA D:SER16 3.7 251.4 1.0 CZ B:ARG78 3.7 207.6 1.0 O2B D:GDP501 3.7 220.4 1.0 C D:SER16 3.9 251.4 1.0 NE2 D:GLN66 3.9 230.5 1.0 CB B:PRO17 4.0 268.3 1.0 O1B D:GDP501 4.2 220.4 1.0 CA D:GLY17 4.2 235.8 1.0 CG B:PRO17 4.2 268.3 1.0 CD B:ARG78 4.2 207.6 1.0 NE B:ARG78 4.3 207.6 1.0 CA B:PRO17 4.4 268.3 1.0 NH2 B:ARG78 4.5 207.6 1.0 O3A D:GDP501 4.7 220.4 1.0 CG D:GLN66 5.0 230.5 1.0

Fluorine binding site 4 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:F502 b:685.1 occ:1.00 F1 E:AF3502 0.0 685.1 1.0 AL E:AF3502 1.7 685.1 1.0 F3 E:AF3502 2.9 685.1 1.0 O2B E:GDP501 2.9 642.5 1.0 F2 E:AF3502 3.0 685.1 1.0 NZ E:LYS74 3.2 619.5 1.0 CD E:ARG70 3.2 620.1 1.0 CB E:SER95 3.2 701.1 1.0 CE E:LYS74 3.3 619.5 1.0 N E:GLY119 3.6 670.0 1.0 CA E:ARG70 3.6 620.1 1.0 OG E:SER95 3.6 701.1 1.0 CA E:SER95 4.0 701.1 1.0 CB E:ARG70 4.1 620.1 1.0 CA E:PRO118 4.1 651.4 1.0 N E:ARG71 4.2 647.7 1.0 NE E:ARG70 4.2 620.1 1.0 O E:LEU69 4.2 592.6 1.0 CG E:ARG70 4.2 620.1 1.0 PB E:GDP501 4.3 642.5 1.0 C E:PRO118 4.4 651.4 1.0 N E:ARG70 4.5 620.1 1.0 CA E:GLY119 4.5 670.0 1.0 C E:ARG70 4.5 620.1 1.0 N E:THR96 4.5 685.3 1.0 O1B E:GDP501 4.5 642.5 1.0 C E:SER95 4.6 701.1 1.0 O E:PHE117 4.7 620.8 1.0 C E:LEU69 4.7 592.6 1.0 CD E:LYS74 4.8 619.5 1.0 CB E:PRO118 4.9 651.4 1.0

Fluorine binding site 5 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:F502 b:685.1 occ:1.00 F2 E:AF3502 0.0 685.1 1.0 AL E:AF3502 1.7 685.1 1.0 F3 E:AF3502 2.9 685.1 1.0 F1 E:AF3502 3.0 685.1 1.0 NH1 E:ARG70 3.2 620.1 1.0 CD E:ARG70 3.3 620.1 1.0 CB E:PRO118 3.3 651.4 1.0 CZ E:ARG70 3.5 620.1 1.0 CA E:PRO118 3.5 651.4 1.0 NE E:ARG70 3.5 620.1 1.0 O E:THR96 3.6 685.3 1.0 CG E:PRO118 3.8 651.4 1.0 C E:THR96 3.8 685.3 1.0 N E:THR96 3.8 685.3 1.0 CB E:SER95 4.1 701.1 1.0 N E:ASN97 4.2 633.6 1.0 C E:SER95 4.2 701.1 1.0 N E:GLY119 4.3 670.0 1.0 CA E:THR96 4.4 685.3 1.0 NH2 E:ARG70 4.4 620.1 1.0 C E:PRO118 4.5 651.4 1.0 CA E:ASN97 4.5 633.6 1.0 N E:PRO118 4.5 651.4 1.0 CA E:SER95 4.6 701.1 1.0 CG E:ARG70 4.6 620.1 1.0 CD E:PRO118 4.6 651.4 1.0 O E:SER95 4.7 701.1 1.0 CB E:ASN97 4.9 633.6 1.0

Fluorine binding site 6 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:F502 b:685.1 occ:1.00 F3 E:AF3502 0.0 685.1 1.0 AL E:AF3502 1.7 685.1 1.0 N E:THR96 2.4 685.3 1.0 O E:THR96 2.5 685.3 1.0 F1 E:AF3502 2.9 685.1 1.0 F2 E:AF3502 2.9 685.1 1.0 C E:THR96 3.2 685.3 1.0 C E:SER95 3.2 701.1 1.0 CA E:THR96 3.3 685.3 1.0 CA E:SER95 3.4 701.1 1.0 CB E:SER95 3.8 701.1 1.0 O E:PHE117 4.0 620.8 1.0 CA E:PRO118 4.1 651.4 1.0 CB E:THR96 4.1 685.3 1.0 N E:ASN97 4.3 633.6 1.0 O E:SER95 4.3 701.1 1.0 CE E:LYS74 4.4 619.5 1.0 N E:PRO118 4.4 651.4 1.0 O2B E:GDP501 4.5 642.5 1.0 C E:PHE117 4.6 620.8 1.0 O1B E:GDP501 4.6 642.5 1.0 N E:SER95 4.7 701.1 1.0 CD E:PRO118 4.7 651.4 1.0 CB E:PRO118 4.8 651.4 1.0 CG E:PRO118 4.8 651.4 1.0 OD1 E:ASP116 4.8 605.0 1.0 OG E:SER95 4.8 701.1 1.0 O E:GLU94 4.8 691.6 1.0 OG1 E:THR96 4.8 685.3 1.0

Fluorine binding site 7 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ K:F502 b:232.0 occ:1.00 F1 K:AF3502 0.0 232.0 1.0 AL K:AF3502 1.7 232.0 1.0 O K:CYS63 2.2 244.0 1.0 F3 K:AF3502 2.9 232.0 1.0 F2 K:AF3502 3.0 232.0 1.0 C K:CYS63 3.2 244.0 1.0 OD1 K:ASP62 3.3 264.3 1.0 CB K:THR42 3.3 235.1 1.0 CA K:GLY64 3.3 234.5 1.0 C K:GLY64 3.5 234.5 1.0 OG1 K:THR42 3.6 235.1 1.0 O K:ILE43 3.6 256.9 1.0 N K:GLY64 3.7 234.5 1.0 N K:GLY65 3.8 239.2 1.0 CG2 K:THR42 3.9 235.1 1.0 CG K:ASP62 3.9 264.3 1.0 OD2 K:ASP62 3.9 264.3 1.0 O K:GLY64 4.0 234.5 1.0 O K:ASP62 4.2 264.3 1.0 CG K:LYS20 4.2 182.9 1.0 O2B K:GDP501 4.4 180.6 1.0 CA K:CYS63 4.5 244.0 1.0 N K:ILE43 4.5 256.9 1.0 C K:ASP62 4.5 264.3 1.0 CA K:GLY65 4.5 239.2 1.0 CA K:THR42 4.6 235.1 1.0 N K:CYS63 4.6 244.0 1.0 C K:ILE43 4.8 256.9 1.0 OG K:SER16 4.8 208.0 1.0 NZ K:LYS20 4.8 182.9 1.0 C K:THR42 4.8 235.1 1.0 O1B K:GDP501 4.8 180.6 1.0

Fluorine binding site 8 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ K:F502 b:232.0 occ:1.00 F2 K:AF3502 0.0 232.0 1.0 AL K:AF3502 1.7 232.0 1.0 N K:GLY65 2.4 239.2 1.0 OG1 K:THR42 2.5 235.1 1.0 OG K:SER16 2.9 208.0 1.0 F3 K:AF3502 2.9 232.0 1.0 F1 K:AF3502 3.0 232.0 1.0 OE1 K:GLN66 3.0 260.3 1.0 O K:ILE43 3.0 256.9 1.0 C K:GLY64 3.2 234.5 1.0 CA K:GLY65 3.2 239.2 1.0 CA K:GLY64 3.3 234.5 1.0 CB K:THR42 3.3 235.1 1.0 CD2 K:PHE69 3.4 255.8 1.0 CE2 K:PHE69 3.4 255.8 1.0 C K:THR42 3.8 235.1 1.0 C K:GLY65 3.8 239.2 1.0 N K:ILE43 3.9 256.9 1.0 N K:GLN66 4.0 260.3 1.0 C K:ILE43 4.0 256.9 1.0 O K:THR42 4.1 235.1 1.0 CA K:THR42 4.2 235.1 1.0 CD K:GLN66 4.2 260.3 1.0 O K:GLY64 4.3 234.5 1.0 CB K:SER16 4.3 208.0 1.0 O K:CYS63 4.4 244.0 1.0 CG2 K:THR42 4.4 235.1 1.0 CA K:ILE43 4.4 256.9 1.0 N K:GLY64 4.5 234.5 1.0 CG K:PHE69 4.6 255.8 1.0 CZ K:PHE69 4.6 255.8 1.0 O K:GLY65 4.7 239.2 1.0 O1B K:GDP501 4.7 180.6 1.0 O2B K:GDP501 4.7 180.6 1.0 NE2 K:GLN66 4.9 260.3 1.0 C K:CYS63 4.9 244.0 1.0 N K:THR42 5.0 235.1 1.0

Fluorine binding site 9 out of 9 in the GATOR1-Rag-Ragulator - Dual Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of GATOR1-Rag-Ragulator - Dual Complex within 5.0Å range: probe atom residue distance (Å) B Occ K:F502 b:232.0 occ:1.00 F3 K:AF3502 0.0 232.0 1.0 AL K:AF3502 1.7 232.0 1.0 O2B K:GDP501 2.2 180.6 1.0 OG K:SER16 2.5 208.0 1.0 OG1 K:THR42 2.7 235.1 1.0 F2 K:AF3502 2.9 232.0 1.0 F1 K:AF3502 2.9 232.0 1.0 CA K:GLY65 3.3 239.2 1.0 NZ K:LYS20 3.3 182.9 1.0 CA K:SER16 3.3 208.0 1.0 CB K:THR42 3.3 235.1 1.0 CB K:SER16 3.4 208.0 1.0 CG2 K:THR42 3.4 235.1 1.0 PB K:GDP501 3.5 180.6 1.0 N K:GLY65 3.5 239.2 1.0 CG K:LYS20 3.6 182.9 1.0 O1B K:GDP501 3.6 180.6 1.0 N K:SER16 3.8 208.0 1.0 CB K:LYS20 3.8 182.9 1.0 C K:GLY64 4.1 234.5 1.0 O3B K:GDP501 4.2 180.6 1.0 C K:GLY65 4.2 239.2 1.0 C K:LYS15 4.2 229.7 1.0 O K:LYS15 4.2 229.7 1.0 CE K:LYS20 4.2 182.9 1.0 O K:GLY64 4.5 234.5 1.0 CD K:LYS20 4.5 182.9 1.0 O K:GLY65 4.5 239.2 1.0 O K:CYS63 4.5 244.0 1.0 OE1 K:GLN66 4.6 260.3 1.0 C K:SER16 4.6 208.0 1.0 O3A K:GDP501 4.7 180.6 1.0 CA K:THR42 4.8 235.1 1.0 N K:GLY17 4.8 182.7 1.0 O1A K:GDP501 4.8 180.6 1.0 CA K:GLY64 4.8 234.5 1.0

S.B.Egri, C.Ouch, H.T.Chou, Z.Yu, K.Song, C.Xu, K.Shen. Cryo-Em Structures of the Human GATOR1-Rag-Ragulator Complex Reveal A Spatial-Constraint Regulated Gap Mechanism. Mol.Cell V. 82 1836 2022.
ISSN: ISSN 1097-2765
PubMed: 35338845
DOI: 10.1016/J.MOLCEL.2022.03.002