Fluorine in PDB 7trg: The Beta-Tubulin Folding Intermediate I

Other elements in 7trg:

The structure of The Beta-Tubulin Folding Intermediate I also contains other interesting chemical elements:

Aluminium (Al) 8 atoms
Magnesium (Mg) 8 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Fluorine atom in the The Beta-Tubulin Folding Intermediate I (pdb code 7trg). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the The Beta-Tubulin Folding Intermediate I, PDB code: 7trg:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 24 in 7trg

Go back to Fluorine Binding Sites List in 7trg
Fluorine binding site 1 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:57.3
occ:1.00
 F1 B:AF3603 0.0 57.3 1.0
AL B:AF3603 1.6 56.9 1.0
MG B:MG601 2.0 55.9 1.0
O3B B:ADP602 2.3 36.2 1.0
OD2 B:ASP99 2.4 62.1 1.0
F3 B:AF3603 2.8 49.0 1.0
F2 B:AF3603 2.8 69.9 1.0
O1B B:ADP602 3.0 55.9 1.0
PB B:ADP602 3.1 48.2 1.0
CG B:ASP99 3.4 59.6 1.0
NZ B:LYS171 3.4 56.9 1.0
O1A B:ADP602 3.5 61.1 1.0
O3A B:ADP602 3.6 46.5 1.0
CE B:LYS171 3.8 52.9 1.0
OD2 B:ASP394 3.9 54.4 1.0
OD1 B:ASP99 4.0 57.9 1.0
N B:GLY100 4.0 44.7 1.0
PA B:ADP602 4.2 60.9 1.0
CA B:ASP99 4.3 47.3 1.0
CB B:ASP99 4.4 55.4 1.0
O2B B:ADP602 4.5 51.0 1.0
C B:ASP99 4.6 44.4 1.0
OD1 B:ASP68 4.7 60.2 1.0
OG1 B:THR101 4.8 49.2 1.0
CA B:GLY100 4.9 45.3 1.0
CG B:ASP394 5.0 58.6 1.0

Fluorine binding site 2 out of 24 in 7trg

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Fluorine binding site 2 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:69.9
occ:1.00
 F2 B:AF3603 0.0 69.9 1.0
AL B:AF3603 1.6 56.9 1.0
F3 B:AF3603 2.8 49.0 1.0
F1 B:AF3603 2.8 57.3 1.0
O B:HOH701 3.0 17.7 1.0
OD1 B:ASP68 3.0 60.2 1.0
OG1 B:THR101 3.2 49.2 1.0
CG B:ASP68 3.6 58.9 1.0
OD2 B:ASP68 3.6 64.7 1.0
OD2 B:ASP394 3.7 54.4 1.0
O3B B:ADP602 3.9 36.2 1.0
NZ B:LYS171 4.1 56.9 1.0
O B:GLY98 4.2 49.3 1.0
OD2 B:ASP99 4.2 62.1 1.0
CA B:ASP99 4.3 47.3 1.0
CE B:LYS171 4.3 52.9 1.0
CB B:THR101 4.4 37.5 1.0
CG2 B:THR101 4.4 34.1 1.0
OD1 B:ASP394 4.4 64.2 1.0
N B:GLY100 4.5 44.7 1.0
CG B:ASP394 4.5 58.6 1.0
N B:THR101 4.6 38.9 1.0
MG B:MG601 4.7 55.9 1.0
CB B:ASP68 4.9 49.7 1.0
CG B:ASP99 4.9 59.6 1.0
N B:ALA69 4.9 47.8 1.0
C B:GLY98 4.9 49.1 1.0
C B:ASP99 5.0 44.4 1.0

Fluorine binding site 3 out of 24 in 7trg

Go back to Fluorine Binding Sites List in 7trg
Fluorine binding site 3 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F603

b:49.0
occ:1.00
 F3 B:AF3603 0.0 49.0 1.0
AL B:AF3603 1.6 56.9 1.0
O3B B:ADP602 2.3 36.2 1.0
F1 B:AF3603 2.8 57.3 1.0
F2 B:AF3603 2.8 69.9 1.0
OG1 B:THR101 3.0 49.2 1.0
PB B:ADP602 3.6 48.2 1.0
N B:ALA69 3.7 47.8 1.0
NZ B:LYS171 3.8 56.9 1.0
O3A B:ADP602 3.8 46.5 1.0
CB B:ALA69 3.9 35.9 1.0
N B:ASN102 4.1 35.4 1.0
N B:THR101 4.2 38.9 1.0
CB B:ASN102 4.2 27.9 1.0
CB B:THR101 4.3 37.5 1.0
OD1 B:ASP68 4.4 60.2 1.0
CA B:ALA69 4.5 45.2 1.0
CA B:ASP68 4.5 51.6 1.0
MG B:MG601 4.6 55.9 1.0
CG B:ASP68 4.6 58.9 1.0
O2B B:ADP602 4.6 51.0 1.0
CA B:THR101 4.6 33.1 1.0
O1B B:ADP602 4.6 55.9 1.0
C B:THR101 4.6 41.6 1.0
C B:ASP68 4.6 60.9 1.0
OD2 B:ASP68 4.7 64.7 1.0
CA B:ASN102 4.8 30.8 1.0
OD2 B:ASP99 4.8 62.1 1.0
O1A B:ADP602 4.9 61.1 1.0
CE B:LYS171 4.9 52.9 1.0
N B:GLY100 4.9 44.7 1.0
O B:ASN67 4.9 64.3 1.0

Fluorine binding site 4 out of 24 in 7trg

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Fluorine binding site 4 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F603

b:79.4
occ:1.00
 F1 C:AF3603 0.0 79.4 1.0
AL C:AF3603 1.8 72.2 1.0
OD2 C:ASP391 2.4 86.8 1.0
F3 C:AF3603 3.1 78.1 1.0
F2 C:AF3603 3.1 74.1 1.0
MG C:MG601 3.1 83.3 1.0
NZ C:LYS166 3.2 72.0 1.0
OD1 C:ASP61 3.4 85.6 1.0
CG C:ASP391 3.5 86.3 1.0
OD2 C:ASP92 3.6 90.6 1.0
CE C:LYS166 3.7 70.6 1.0
O C:HOH701 4.0 49.0 1.0
OD1 C:ASP391 4.0 84.8 1.0
O3B C:ADP602 4.1 74.1 1.0
O3A C:ADP602 4.2 80.4 1.0
CG C:ASP92 4.4 84.1 1.0
CG C:ASP61 4.5 81.0 1.0
CB C:ASP391 4.6 78.2 1.0
PB C:ADP602 4.7 71.1 1.0
N C:GLY93 4.8 71.4 1.0
CA C:ASP92 4.8 67.2 1.0
OG1 C:THR94 4.9 79.1 1.0
O1B C:ADP602 4.9 80.9 1.0
CB C:ASP92 5.0 70.1 1.0

Fluorine binding site 5 out of 24 in 7trg

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Fluorine binding site 5 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F603

b:74.1
occ:1.00
 F2 C:AF3603 0.0 74.1 1.0
AL C:AF3603 1.8 72.2 1.0
O C:ASN60 2.8 82.4 1.0
NZ C:LYS166 2.9 72.0 1.0
F3 C:AF3603 3.1 78.1 1.0
F1 C:AF3603 3.1 79.4 1.0
CA C:ASP61 3.1 76.1 1.0
CE C:LYS166 3.2 70.6 1.0
OD1 C:ASN60 3.2 82.0 1.0
OD1 C:ASP61 3.3 85.6 1.0
C C:ASN60 3.3 75.5 1.0
N C:ASP61 3.5 74.6 1.0
CB C:ASP61 3.9 76.2 1.0
CG C:ASP61 4.0 81.0 1.0
CG C:ASN60 4.1 75.0 1.0
N C:GLY62 4.1 54.2 1.0
CD C:LYS166 4.2 68.7 1.0
C C:ASP61 4.2 74.5 1.0
CB C:ASN60 4.5 70.6 1.0
CA C:ASN60 4.5 71.1 1.0
OD2 C:ASP391 4.5 86.8 1.0
O3A C:ADP602 4.6 80.4 1.0
MG C:MG601 4.8 83.3 1.0

Fluorine binding site 6 out of 24 in 7trg

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Fluorine binding site 6 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F603

b:78.1
occ:1.00
 F3 C:AF3603 0.0 78.1 1.0
AL C:AF3603 1.8 72.2 1.0
OG1 C:THR94 2.6 79.1 1.0
O3B C:ADP602 2.7 74.1 1.0
F1 C:AF3603 3.1 79.4 1.0
F2 C:AF3603 3.1 74.1 1.0
OD1 C:ASP61 3.4 85.6 1.0
N C:GLY62 3.5 54.2 1.0
O3A C:ADP602 3.7 80.4 1.0
CG2 C:THR95 3.7 68.2 1.0
N C:THR95 3.9 57.5 1.0
N C:THR94 3.9 64.8 1.0
PB C:ADP602 3.9 71.1 1.0
CB C:THR94 3.9 65.6 1.0
MG C:MG601 4.1 83.3 1.0
OG1 C:THR95 4.1 73.2 1.0
CA C:THR94 4.3 61.3 1.0
CA C:GLY62 4.3 55.4 1.0
CA C:ASP61 4.4 76.1 1.0
CB C:THR95 4.4 60.5 1.0
C C:ASP61 4.5 74.5 1.0
C C:THR94 4.5 67.6 1.0
CG C:ASP61 4.5 81.0 1.0
CG2 C:THR94 4.6 60.5 1.0
O C:ASN60 4.6 82.4 1.0
CA C:THR95 4.8 62.1 1.0
O2B C:ADP602 4.8 74.5 1.0
C C:GLY93 4.9 65.6 1.0
O1B C:ADP602 4.9 80.9 1.0
N C:GLY93 4.9 71.4 1.0

Fluorine binding site 7 out of 24 in 7trg

Go back to Fluorine Binding Sites List in 7trg
Fluorine binding site 7 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:74.0
occ:1.00
 F1 D:AF3603 0.0 74.0 1.0
AL D:AF3603 1.8 84.3 1.0
O3B D:ADP602 2.4 67.4 1.0
O3A D:ADP602 2.5 85.4 1.0
PB D:ADP602 3.1 74.4 1.0
F2 D:AF3603 3.1 86.0 1.0
F3 D:AF3603 3.1 82.5 1.0
CG2 D:THR107 3.3 60.0 1.0
PA D:ADP602 3.8 92.7 1.0
MG D:MG601 4.1 73.9 1.0
O1B D:ADP602 4.1 83.8 1.0
O2B D:ADP602 4.1 71.3 1.0
O1A D:ADP602 4.1 83.9 1.0
O D:ASN72 4.2 83.2 1.0
O2A D:ADP602 4.2 81.1 1.0
CB D:THR107 4.3 61.5 1.0
OD1 D:ASN72 4.4 83.9 1.0
OD1 D:ASP73 4.4 93.5 1.0
N D:GLY74 4.6 65.1 1.0
OG1 D:THR106 4.7 74.9 1.0
N D:THR107 4.8 65.5 1.0
CE D:LYS176 4.8 81.8 1.0
O D:SER51 4.8 79.6 1.0
CA D:ASP73 4.9 78.5 1.0

Fluorine binding site 8 out of 24 in 7trg

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Fluorine binding site 8 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:86.0
occ:1.00
 F2 D:AF3603 0.0 86.0 1.0
AL D:AF3603 1.8 84.3 1.0
NZ D:LYS176 2.5 88.7 1.0
OD1 D:ASP73 2.5 93.5 1.0
CE D:LYS176 2.8 81.8 1.0
OD2 D:ASP404 3.0 81.4 1.0
F3 D:AF3603 3.1 82.5 1.0
F1 D:AF3603 3.1 74.0 1.0
CG D:ASP73 3.6 87.6 1.0
CA D:ASP73 4.1 78.5 1.0
CG D:ASP404 4.2 83.1 1.0
CD D:LYS176 4.2 82.9 1.0
MG D:MG601 4.3 73.9 1.0
CB D:ASP73 4.3 76.6 1.0
O3B D:ADP602 4.4 67.4 1.0
OD2 D:ASP73 4.5 86.2 1.0
O D:ASN72 4.6 83.2 1.0
O D:HOH701 4.7 32.8 1.0
N D:ASP73 4.7 84.6 1.0
OD1 D:ASP104 4.8 85.2 1.0
O3A D:ADP602 4.8 85.4 1.0
OD1 D:ASP404 4.9 86.7 1.0
C D:ASN72 4.9 82.5 1.0
OD1 D:ASN72 4.9 83.9 1.0

Fluorine binding site 9 out of 24 in 7trg

Go back to Fluorine Binding Sites List in 7trg
Fluorine binding site 9 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
D:F603

b:82.5
occ:1.00
 F3 D:AF3603 0.0 82.5 1.0
AL D:AF3603 1.8 84.3 1.0
OG1 D:THR106 2.7 74.9 1.0
O3B D:ADP602 2.8 67.4 1.0
OD1 D:ASP73 3.1 93.5 1.0
F2 D:AF3603 3.1 86.0 1.0
F1 D:AF3603 3.1 74.0 1.0
N D:THR106 3.4 64.4 1.0
CB D:THR106 3.7 61.5 1.0
N D:GLY105 3.7 76.8 1.0
CG2 D:THR106 3.8 62.1 1.0
OD1 D:ASP104 3.9 85.2 1.0
CA D:THR106 4.1 59.7 1.0
CG D:ASP73 4.2 87.6 1.0
OD2 D:ASP404 4.2 81.4 1.0
PB D:ADP602 4.3 74.4 1.0
C D:GLY105 4.4 69.0 1.0
CA D:ASP104 4.4 71.5 1.0
CA D:GLY105 4.4 65.8 1.0
O D:HOH701 4.4 32.8 1.0
C D:ASP104 4.4 80.0 1.0
N D:THR107 4.6 65.5 1.0
MG D:MG601 4.6 73.9 1.0
N D:GLY74 4.7 65.1 1.0
O3A D:ADP602 4.7 85.4 1.0
C D:THR106 4.7 64.6 1.0
OD2 D:ASP73 4.8 86.2 1.0
O1B D:ADP602 4.8 83.8 1.0
CG D:ASP104 5.0 81.9 1.0

Fluorine binding site 10 out of 24 in 7trg

Go back to Fluorine Binding Sites List in 7trg
Fluorine binding site 10 out of 24 in the The Beta-Tubulin Folding Intermediate I


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of The Beta-Tubulin Folding Intermediate I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F603

b:60.0
occ:1.00
 F1 E:AF3603 0.0 60.0 1.0
AL E:AF3603 1.8 64.4 1.0
MG E:MG601 2.3 53.3 1.0
NZ E:LYS170 2.6 69.5 1.0
O1B E:ADP602 2.8 73.5 1.0
OD1 E:ASP97 2.9 73.8 1.0
OD2 E:ASP392 3.0 74.3 1.0
F2 E:AF3603 3.1 68.6 1.0
F3 E:AF3603 3.1 74.6 1.0
CE E:LYS170 3.5 61.8 1.0
CG E:ASP392 3.9 80.2 1.0
O3A E:ADP602 4.0 67.3 1.0
PB E:ADP602 4.0 66.4 1.0
CG E:ASP97 4.0 71.6 1.0
CB E:ASP392 4.3 69.1 1.0
CD E:LYS170 4.6 63.9 1.0
CA E:ASP97 4.8 59.9 1.0
OD2 E:ASP97 4.9 77.5 1.0
N E:GLY98 4.9 60.5 1.0
O2B E:ADP602 4.9 57.7 1.0
CB E:ASP97 4.9 57.2 1.0
OD1 E:ASP392 4.9 80.8 1.0
O3B E:ADP602 4.9 71.7 1.0

Reference:

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014
Page generated: Fri Aug 2 13:32:40 2024

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