Fluorine in PDB 7tub: The Beta-Tubulin Folding Intermediate IV

The structure of The Beta-Tubulin Folding Intermediate IV also contains other interesting chemical elements:

Aluminium	(Al)	8 atoms
Magnesium	(Mg)	8 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Fluorine atom in the The Beta-Tubulin Folding Intermediate IV (pdb code 7tub). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 24 binding sites of Fluorine where determined in the The Beta-Tubulin Folding Intermediate IV, PDB code: 7tub:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ B:F603 b:53.6 occ:1.00 F1 B:AF3603 0.0 53.6 1.0 AL B:AF3603 1.8 53.6 1.0 O3B B:ADP602 2.4 49.4 1.0 F3 B:AF3603 3.1 53.6 1.0 F2 B:AF3603 3.1 53.6 1.0 N B:ALA69 3.4 48.7 1.0 O1A B:ADP602 3.7 49.4 1.0 CA B:ASP68 3.8 51.6 1.0 PB B:ADP602 3.8 49.4 1.0 OG1 B:THR101 3.8 46.6 1.0 C B:ASP68 4.1 51.6 1.0 O2A B:ADP602 4.1 49.4 1.0 PA B:ADP602 4.1 49.4 1.0 OD2 B:ASP68 4.2 51.6 1.0 CB B:ALA69 4.2 48.7 1.0 O3A B:ADP602 4.2 49.4 1.0 O B:ASN67 4.2 52.7 1.0 NZ B:LYS171 4.3 49.7 1.0 O1B B:ADP602 4.3 49.4 1.0 CG B:ASP68 4.4 51.6 1.0 CA B:ALA69 4.4 48.7 1.0 CB B:ASN102 4.4 44.6 1.0 ND2 B:ASN102 4.6 44.6 1.0 CB B:ASP68 4.6 51.6 1.0 N B:ASP68 4.6 51.6 1.0 OD1 B:ASP99 4.7 49.9 1.0 OD1 B:ASN67 4.8 52.7 1.0 N B:ASN102 4.8 44.6 1.0 C B:ASN67 4.8 52.7 1.0 OD1 B:ASP68 4.9 51.6 1.0 O2B B:ADP602 4.9 49.4 1.0 CG B:ASN102 5.0 44.6 1.0

Fluorine binding site 2 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ B:F603 b:53.6 occ:1.00 F2 B:AF3603 0.0 53.6 1.0 AL B:AF3603 1.8 53.6 1.0 OD2 B:ASP394 2.3 48.3 1.0 NZ B:LYS171 2.9 49.7 1.0 OD2 B:ASP68 3.0 51.6 1.0 F3 B:AF3603 3.1 53.6 1.0 F1 B:AF3603 3.1 53.6 1.0 CE B:LYS171 3.2 49.7 1.0 CD B:LYS171 3.2 49.7 1.0 CG B:ASP394 3.5 48.3 1.0 OD1 B:ASP99 3.7 49.9 1.0 CG B:ASP68 3.9 51.6 1.0 O1A B:ADP602 4.0 49.4 1.0 O B:HOH701 4.0 39.6 1.0 OD1 B:ASP394 4.1 48.3 1.0 CG B:LYS171 4.3 49.7 1.0 CB B:ASP68 4.3 51.6 1.0 CA B:ASP68 4.4 51.6 1.0 MG B:MG601 4.4 51.9 1.0 CB B:ASP394 4.6 48.3 1.0 O3B B:ADP602 4.6 49.4 1.0 CG B:ASP99 4.7 49.9 1.0 OD1 B:ASP68 4.9 51.6 1.0

Fluorine binding site 3 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ B:F603 b:53.6 occ:1.00 F3 B:AF3603 0.0 53.6 1.0 AL B:AF3603 1.8 53.6 1.0 OD1 B:ASP99 2.6 49.9 1.0 OG1 B:THR101 2.9 46.6 1.0 F2 B:AF3603 3.1 53.6 1.0 F1 B:AF3603 3.1 53.6 1.0 O3B B:ADP602 3.2 49.4 1.0 N B:GLY100 3.4 47.8 1.0 N B:THR101 3.5 46.6 1.0 O1B B:ADP602 3.6 49.4 1.0 CA B:ASP99 3.7 49.9 1.0 CG B:ASP99 3.8 49.9 1.0 CB B:THR101 3.9 46.6 1.0 PB B:ADP602 3.9 49.4 1.0 OD2 B:ASP68 3.9 51.6 1.0 OD2 B:ASP394 4.0 48.3 1.0 C B:ASP99 4.0 49.9 1.0 CG2 B:THR101 4.0 46.6 1.0 CA B:THR101 4.3 46.6 1.0 O B:GLY98 4.3 47.1 1.0 CA B:GLY100 4.3 47.8 1.0 CB B:ASP99 4.4 49.9 1.0 O B:HOH701 4.4 39.6 1.0 C B:GLY100 4.4 47.8 1.0 O1A B:ADP602 4.4 49.4 1.0 MG B:MG601 4.5 51.9 1.0 CG B:ASP68 4.7 51.6 1.0 N B:ASP99 4.8 49.9 1.0 N B:ASN102 4.8 44.6 1.0 OD2 B:ASP99 4.8 49.9 1.0 CG B:ASP394 4.8 48.3 1.0 O2B B:ADP602 4.9 49.4 1.0 OD1 B:ASP394 4.9 48.3 1.0 C B:GLY98 4.9 47.1 1.0 OD1 B:ASP68 5.0 51.6 1.0 C B:THR101 5.0 46.6 1.0

Fluorine binding site 4 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ C:F603 b:51.0 occ:1.00 F1 C:AF3603 0.0 51.0 1.0 AL C:AF3603 1.8 51.0 1.0 OD1 C:ASP61 2.8 49.0 1.0 NZ C:LYS166 3.0 47.5 1.0 F2 C:AF3603 3.1 51.0 1.0 F3 C:AF3603 3.1 51.0 1.0 CA C:ASP61 3.2 49.0 1.0 CE C:LYS166 3.2 47.5 1.0 OD2 C:ASP391 3.6 48.7 1.0 CG C:ASP61 3.6 49.0 1.0 CB C:ASP61 3.8 49.0 1.0 O3B C:ADP602 3.8 52.9 1.0 O C:ASN60 3.9 49.5 1.0 N C:GLY62 3.9 44.3 1.0 N C:ASP61 3.9 49.0 1.0 C C:ASP61 4.1 49.0 1.0 C C:ASN60 4.2 49.5 1.0 OD1 C:ASN60 4.2 49.5 1.0 O2A C:ADP602 4.3 52.9 1.0 CD C:LYS166 4.6 47.5 1.0 OD2 C:ASP61 4.7 49.0 1.0 O1B C:ADP602 4.7 52.9 1.0 CG C:ASP391 4.8 48.7 1.0 PB C:ADP602 4.9 52.9 1.0

Fluorine binding site 5 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ C:F603 b:51.0 occ:1.00 F2 C:AF3603 0.0 51.0 1.0 AL C:AF3603 1.8 51.0 1.0 OD1 C:ASP92 2.5 49.8 1.0 O1B C:ADP602 2.6 52.9 1.0 OD2 C:ASP391 3.1 48.7 1.0 F1 C:AF3603 3.1 51.0 1.0 F3 C:AF3603 3.1 51.0 1.0 CG C:ASP92 3.3 49.8 1.0 MG C:MG601 3.5 56.0 1.0 CA C:ASP92 3.7 49.8 1.0 O3B C:ADP602 3.7 52.9 1.0 PB C:ADP602 3.7 52.9 1.0 N C:GLY93 3.8 47.5 1.0 O1A C:ADP602 3.8 52.9 1.0 CG C:ASP391 3.9 48.7 1.0 OD2 C:ASP92 4.1 49.8 1.0 CB C:ASP92 4.1 49.8 1.0 O C:GLY91 4.1 47.4 1.0 OD1 C:ASP61 4.1 49.0 1.0 NZ C:LYS166 4.1 47.5 1.0 C C:ASP92 4.3 49.8 1.0 O2A C:ADP602 4.3 52.9 1.0 PA C:ADP602 4.4 52.9 1.0 O3A C:ADP602 4.6 52.9 1.0 OD1 C:ASP391 4.6 48.7 1.0 CB C:ASP391 4.7 48.7 1.0 CG2 C:THR94 4.8 46.2 1.0 N C:THR94 4.8 46.2 1.0 N C:ASP92 4.8 49.8 1.0 O C:HOH701 4.9 39.4 1.0 C C:GLY91 4.9 47.4 1.0 CE C:LYS166 4.9 47.5 1.0 CA C:GLY93 4.9 47.5 1.0 O2B C:ADP602 5.0 52.9 1.0

Fluorine binding site 6 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ C:F603 b:51.0 occ:1.00 F3 C:AF3603 0.0 51.0 1.0 AL C:AF3603 1.8 51.0 1.0 OG1 C:THR94 2.3 46.2 1.0 O3B C:ADP602 2.4 52.9 1.0 F1 C:AF3603 3.1 51.0 1.0 F2 C:AF3603 3.1 51.0 1.0 CB C:THR94 3.2 46.2 1.0 PB C:ADP602 3.3 52.9 1.0 CG2 C:THR94 3.3 46.2 1.0 O1B C:ADP602 3.3 52.9 1.0 N C:THR94 3.4 46.2 1.0 N C:GLY62 3.4 44.3 1.0 N C:THR95 3.7 45.7 1.0 CA C:THR94 3.7 46.2 1.0 CG2 C:THR95 3.8 45.7 1.0 OD1 C:ASP61 3.8 49.0 1.0 O2B C:ADP602 4.0 52.9 1.0 CA C:GLY62 4.1 44.3 1.0 C C:THR94 4.1 46.2 1.0 CG C:ASP61 4.4 49.0 1.0 N C:GLY93 4.4 47.5 1.0 C C:ASP61 4.5 49.0 1.0 C C:GLY93 4.5 47.5 1.0 N C:ALA63 4.5 45.6 1.0 CA C:ASP61 4.6 49.0 1.0 O3A C:ADP602 4.7 52.9 1.0 CB C:THR95 4.7 45.7 1.0 OG1 C:THR95 4.7 45.7 1.0 CA C:THR95 4.8 45.7 1.0 OD2 C:ASP61 4.8 49.0 1.0 C C:GLY62 4.8 44.3 1.0 CA C:GLY93 4.9 47.5 1.0 O2A C:ADP602 4.9 52.9 1.0

Fluorine binding site 7 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ D:F603 b:50.4 occ:1.00 F1 D:AF3603 0.0 50.4 1.0 AL D:AF3603 1.6 50.4 1.0 MG D:MG601 1.9 50.1 1.0 O3A D:ADP602 2.2 48.5 1.0 O3B D:ADP602 2.6 48.5 1.0 F3 D:AF3603 2.8 50.4 1.0 F2 D:AF3603 2.8 50.4 1.0 PB D:ADP602 3.0 48.5 1.0 PA D:ADP602 3.3 48.5 1.0 O1A D:ADP602 3.3 48.5 1.0 CG2 D:THR107 3.4 42.6 1.0 O1B D:ADP602 3.7 48.5 1.0 O2A D:ADP602 3.9 48.5 1.0 O2B D:ADP602 4.3 48.5 1.0 CE D:LYS176 4.4 50.8 1.0 O D:ASN72 4.4 49.1 1.0 CB D:THR107 4.5 42.6 1.0 OD1 D:ASP73 4.6 48.4 1.0 O5' D:ADP602 4.6 48.5 1.0 N D:GLY74 4.6 44.2 1.0 OG1 D:THR106 4.7 43.5 1.0 OD1 D:ASP104 4.7 46.5 1.0 NZ D:LYS176 4.8 50.8 1.0 N D:THR107 4.9 42.6 1.0

Fluorine binding site 8 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ D:F603 b:50.4 occ:1.00 F2 D:AF3603 0.0 50.4 1.0 AL D:AF3603 1.6 50.4 1.0 OD1 D:ASP73 2.6 48.4 1.0 OD2 D:ASP404 2.6 48.0 1.0 MG D:MG601 2.8 50.1 1.0 F3 D:AF3603 2.8 50.4 1.0 F1 D:AF3603 2.8 50.4 1.0 NZ D:LYS176 3.1 50.8 1.0 CG D:ASP404 3.7 48.0 1.0 CE D:LYS176 3.7 50.8 1.0 CG D:ASP73 3.8 48.4 1.0 OD1 D:ASP104 4.0 46.5 1.0 O3B D:ADP602 4.0 48.5 1.0 OD1 D:ASP404 4.1 48.0 1.0 OG1 D:THR106 4.4 43.5 1.0 CA D:ASP73 4.4 48.4 1.0 OD2 D:ASP73 4.6 48.4 1.0 O3A D:ADP602 4.6 48.5 1.0 CB D:ASP73 4.7 48.4 1.0 O D:HOH701 4.7 40.8 1.0 O D:GLY103 4.7 44.1 1.0 O1A D:ADP602 4.7 48.5 1.0 N D:GLY74 4.8 44.2 1.0 CB D:ASP404 4.8 48.0 1.0 PB D:ADP602 4.8 48.5 1.0 O1B D:ADP602 4.9 48.5 1.0

Fluorine binding site 9 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ D:F603 b:50.4 occ:1.00 F3 D:AF3603 0.0 50.4 1.0 AL D:AF3603 1.6 50.4 1.0 O3B D:ADP602 2.2 48.5 1.0 OG1 D:THR106 2.3 43.5 1.0 F2 D:AF3603 2.8 50.4 1.0 F1 D:AF3603 2.8 50.4 1.0 N D:THR106 2.8 43.5 1.0 MG D:MG601 2.9 50.1 1.0 CB D:THR106 3.3 43.5 1.0 N D:GLY105 3.5 43.5 1.0 CA D:THR106 3.5 43.5 1.0 N D:THR107 3.5 42.6 1.0 PB D:ADP602 3.6 48.5 1.0 OD1 D:ASP73 3.8 48.4 1.0 C D:GLY105 3.8 43.5 1.0 CG2 D:THR106 3.9 43.5 1.0 CA D:GLY105 4.0 43.5 1.0 C D:THR106 4.0 43.5 1.0 CG2 D:THR107 4.0 42.6 1.0 N D:GLY74 4.0 44.2 1.0 O3A D:ADP602 4.1 48.5 1.0 OD1 D:ASP104 4.2 46.5 1.0 O1B D:ADP602 4.3 48.5 1.0 C D:ASP104 4.5 46.5 1.0 CA D:GLY74 4.6 44.2 1.0 CA D:ASP104 4.6 46.5 1.0 CB D:THR107 4.6 42.6 1.0 CA D:THR107 4.7 42.6 1.0 O2B D:ADP602 4.7 48.5 1.0 CG D:ASP73 4.9 48.4 1.0 O D:GLY105 4.9 43.5 1.0 O D:GLY103 5.0 44.1 1.0

Fluorine binding site 10 out of 24 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ E:F603 b:43.0 occ:1.00 F1 E:AF3603 0.0 43.0 1.0 AL E:AF3603 1.8 43.0 1.0 O3B E:ADP602 2.9 41.8 1.0 OG1 E:THR100 2.9 37.5 1.0 N E:GLY67 3.0 40.5 1.0 F2 E:AF3603 3.1 43.0 1.0 F3 E:AF3603 3.1 43.0 1.0 OG1 E:THR99 3.4 38.3 1.0 CA E:ASP66 3.4 43.2 1.0 C E:ASP66 3.7 43.2 1.0 CA E:GLY67 4.0 40.5 1.0 O E:ASN65 4.0 44.1 1.0 CG E:ASP66 4.0 43.2 1.0 NZ E:LYS170 4.0 43.6 1.0 CB E:THR100 4.1 37.5 1.0 OD1 E:ASP66 4.1 43.2 1.0 OD2 E:ASP66 4.2 43.2 1.0 PB E:ADP602 4.2 41.8 1.0 N E:THR100 4.2 37.5 1.0 CB E:ASP66 4.3 43.2 1.0 O3A E:ADP602 4.3 41.8 1.0 N E:ASP66 4.4 43.2 1.0 OD1 E:ASN65 4.5 44.1 1.0 C E:ASN65 4.6 44.1 1.0 CB E:THR99 4.8 38.3 1.0 CA E:THR100 4.8 37.5 1.0 CE E:LYS170 4.8 43.6 1.0 O E:ASP66 4.8 43.2 1.0 O1A E:ADP602 4.9 41.8 1.0 N E:THR99 5.0 38.3 1.0

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014