Fluorine in PDB 7tyq: TEAD2 Bound to Compound 1
Protein crystallography data
The structure of TEAD2 Bound to Compound 1, PDB code: 7tyq
was solved by
C.L.Noland,
R.Fong,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
74.33 /
1.88
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
114.854,
61.183,
79.951,
90,
111.61,
90
|
R / Rfree (%)
|
20.6 /
24.7
|
Fluorine Binding Sites:
The binding sites of Fluorine atom in the TEAD2 Bound to Compound 1
(pdb code 7tyq). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the
TEAD2 Bound to Compound 1, PDB code: 7tyq:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
Fluorine binding site 1 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 1 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:48.1
occ:1.00
|
F
|
A:KUI501
|
0.0
|
48.1
|
1.0
|
C15
|
A:KUI501
|
1.3
|
51.7
|
1.0
|
F2
|
A:KUI501
|
2.1
|
53.1
|
1.0
|
F1
|
A:KUI501
|
2.1
|
53.7
|
1.0
|
C12
|
A:KUI501
|
2.4
|
42.9
|
1.0
|
C13
|
A:KUI501
|
3.1
|
40.7
|
1.0
|
C11
|
A:KUI501
|
3.4
|
39.3
|
1.0
|
CB
|
A:PHE251
|
3.4
|
25.6
|
1.0
|
CD2
|
A:LEU387
|
3.7
|
25.4
|
1.0
|
CG
|
A:PHE251
|
4.1
|
28.8
|
1.0
|
CG1
|
A:VAL252
|
4.2
|
29.9
|
1.0
|
CB
|
A:ALA304
|
4.2
|
25.1
|
1.0
|
C14
|
A:KUI501
|
4.3
|
36.3
|
1.0
|
C10
|
A:KUI501
|
4.6
|
29.0
|
1.0
|
CG
|
A:LEU387
|
4.6
|
22.6
|
1.0
|
CD1
|
A:LEU387
|
4.6
|
29.2
|
1.0
|
CD1
|
A:PHE251
|
4.6
|
27.6
|
1.0
|
CA
|
A:PHE251
|
4.7
|
27.3
|
1.0
|
CG2
|
A:VAL252
|
4.7
|
31.2
|
1.0
|
CD2
|
A:PHE251
|
4.7
|
29.6
|
1.0
|
C
|
A:PHE251
|
4.7
|
32.8
|
1.0
|
CD2
|
A:LEU306
|
4.8
|
35.3
|
1.0
|
N
|
A:VAL252
|
5.0
|
27.8
|
1.0
|
C9
|
A:KUI501
|
5.0
|
35.5
|
1.0
|
CB
|
A:ALA235
|
5.0
|
26.1
|
1.0
|
|
Fluorine binding site 2 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 2 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:53.7
occ:1.00
|
F1
|
A:KUI501
|
0.0
|
53.7
|
1.0
|
C15
|
A:KUI501
|
1.3
|
51.7
|
1.0
|
F2
|
A:KUI501
|
2.1
|
53.1
|
1.0
|
F
|
A:KUI501
|
2.1
|
48.1
|
1.0
|
C12
|
A:KUI501
|
2.4
|
42.9
|
1.0
|
C13
|
A:KUI501
|
2.9
|
40.7
|
1.0
|
C11
|
A:KUI501
|
3.5
|
39.3
|
1.0
|
CD2
|
A:LEU387
|
3.5
|
25.4
|
1.0
|
CG
|
A:LEU387
|
4.2
|
22.6
|
1.0
|
C14
|
A:KUI501
|
4.2
|
36.3
|
1.0
|
CE1
|
A:PHE406
|
4.4
|
34.1
|
1.0
|
C10
|
A:KUI501
|
4.7
|
29.0
|
1.0
|
CZ
|
A:PHE406
|
4.7
|
36.6
|
1.0
|
CD1
|
A:LEU387
|
4.8
|
29.2
|
1.0
|
CD2
|
A:PHE386
|
4.8
|
29.4
|
1.0
|
CE2
|
A:PHE428
|
4.9
|
24.9
|
1.0
|
CE2
|
A:PHE386
|
4.9
|
30.3
|
1.0
|
CD2
|
A:PHE428
|
4.9
|
24.1
|
1.0
|
C9
|
A:KUI501
|
5.0
|
35.5
|
1.0
|
|
Fluorine binding site 3 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 3 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F501
b:53.1
occ:1.00
|
F2
|
A:KUI501
|
0.0
|
53.1
|
1.0
|
C15
|
A:KUI501
|
1.3
|
51.7
|
1.0
|
F1
|
A:KUI501
|
2.1
|
53.7
|
1.0
|
F
|
A:KUI501
|
2.1
|
48.1
|
1.0
|
C12
|
A:KUI501
|
2.4
|
42.9
|
1.0
|
C11
|
A:KUI501
|
2.7
|
39.3
|
1.0
|
CE2
|
A:PHE428
|
3.1
|
24.9
|
1.0
|
CD2
|
A:PHE428
|
3.3
|
24.1
|
1.0
|
C13
|
A:KUI501
|
3.6
|
40.7
|
1.0
|
CG1
|
A:VAL252
|
3.9
|
29.9
|
1.0
|
CZ
|
A:PHE428
|
4.0
|
24.7
|
1.0
|
C10
|
A:KUI501
|
4.1
|
29.0
|
1.0
|
CB
|
A:ALA304
|
4.2
|
25.1
|
1.0
|
CG
|
A:PHE428
|
4.3
|
22.9
|
1.0
|
CE1
|
A:PHE406
|
4.7
|
34.1
|
1.0
|
CG2
|
A:VAL252
|
4.7
|
31.2
|
1.0
|
C14
|
A:KUI501
|
4.8
|
36.3
|
1.0
|
CE1
|
A:PHE428
|
4.9
|
24.3
|
1.0
|
CB
|
A:VAL252
|
4.9
|
26.8
|
1.0
|
C9
|
A:KUI501
|
5.0
|
35.5
|
1.0
|
|
Fluorine binding site 4 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 4 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:42.6
occ:1.00
|
F
|
B:KUI501
|
0.0
|
42.6
|
1.0
|
C15
|
B:KUI501
|
1.3
|
38.9
|
1.0
|
F1
|
B:KUI501
|
2.1
|
51.6
|
1.0
|
F2
|
B:KUI501
|
2.1
|
52.3
|
1.0
|
C12
|
B:KUI501
|
2.4
|
39.6
|
1.0
|
C11
|
B:KUI501
|
3.1
|
42.9
|
1.0
|
C13
|
B:KUI501
|
3.3
|
50.5
|
1.0
|
CD2
|
B:PHE428
|
3.9
|
21.6
|
1.0
|
CE2
|
B:PHE428
|
3.9
|
22.8
|
1.0
|
CE1
|
B:PHE406
|
4.2
|
40.0
|
1.0
|
C10
|
B:KUI501
|
4.4
|
41.0
|
1.0
|
CD2
|
B:LEU387
|
4.5
|
47.8
|
1.0
|
C14
|
B:KUI501
|
4.5
|
48.9
|
1.0
|
CZ
|
B:PHE428
|
4.6
|
21.7
|
1.0
|
CG
|
B:PHE428
|
4.7
|
17.7
|
1.0
|
CB
|
B:ALA304
|
4.7
|
34.4
|
1.0
|
CD2
|
B:LEU403
|
4.7
|
35.4
|
1.0
|
CZ
|
B:PHE406
|
4.7
|
52.0
|
1.0
|
CD1
|
B:PHE406
|
4.8
|
41.5
|
1.0
|
C9
|
B:KUI501
|
5.0
|
37.1
|
1.0
|
|
Fluorine binding site 5 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 5 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:51.6
occ:1.00
|
F1
|
B:KUI501
|
0.0
|
51.6
|
1.0
|
C15
|
B:KUI501
|
1.3
|
38.9
|
1.0
|
F
|
B:KUI501
|
2.1
|
42.6
|
1.0
|
F2
|
B:KUI501
|
2.1
|
52.3
|
1.0
|
C12
|
B:KUI501
|
2.4
|
39.6
|
1.0
|
C11
|
B:KUI501
|
2.9
|
42.9
|
1.0
|
CG1
|
B:VAL252
|
3.4
|
31.6
|
1.0
|
C13
|
B:KUI501
|
3.5
|
50.5
|
1.0
|
CB
|
B:PHE251
|
3.7
|
35.4
|
1.0
|
CB
|
B:ALA304
|
3.9
|
34.4
|
1.0
|
CE2
|
B:PHE428
|
3.9
|
22.8
|
1.0
|
CG2
|
B:VAL252
|
3.9
|
36.8
|
1.0
|
CD2
|
B:PHE428
|
4.2
|
21.6
|
1.0
|
C10
|
B:KUI501
|
4.2
|
41.0
|
1.0
|
CB
|
B:VAL252
|
4.3
|
33.1
|
1.0
|
C
|
B:PHE251
|
4.5
|
37.7
|
1.0
|
N
|
B:VAL252
|
4.5
|
36.0
|
1.0
|
CG
|
B:PHE251
|
4.7
|
41.2
|
1.0
|
C14
|
B:KUI501
|
4.7
|
48.9
|
1.0
|
O
|
B:PHE251
|
4.8
|
36.1
|
1.0
|
CA
|
B:PHE251
|
4.8
|
33.4
|
1.0
|
CB
|
B:ALA235
|
4.8
|
33.5
|
1.0
|
CZ
|
B:PHE428
|
4.9
|
21.7
|
1.0
|
C9
|
B:KUI501
|
5.0
|
37.1
|
1.0
|
|
Fluorine binding site 6 out
of 6 in 7tyq
Go back to
Fluorine Binding Sites List in 7tyq
Fluorine binding site 6 out
of 6 in the TEAD2 Bound to Compound 1
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of TEAD2 Bound to Compound 1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F501
b:52.3
occ:1.00
|
F2
|
B:KUI501
|
0.0
|
52.3
|
1.0
|
C15
|
B:KUI501
|
1.3
|
38.9
|
1.0
|
F1
|
B:KUI501
|
2.1
|
51.6
|
1.0
|
F
|
B:KUI501
|
2.1
|
42.6
|
1.0
|
C12
|
B:KUI501
|
2.3
|
39.6
|
1.0
|
C13
|
B:KUI501
|
2.7
|
50.5
|
1.0
|
CD2
|
B:LEU387
|
3.1
|
47.8
|
1.0
|
C11
|
B:KUI501
|
3.6
|
42.9
|
1.0
|
CB
|
B:PHE251
|
3.7
|
35.4
|
1.0
|
CD1
|
B:LEU387
|
4.0
|
41.8
|
1.0
|
CG
|
B:PHE251
|
4.0
|
41.2
|
1.0
|
CG
|
B:LEU387
|
4.0
|
42.9
|
1.0
|
C14
|
B:KUI501
|
4.1
|
48.9
|
1.0
|
CD2
|
B:PHE251
|
4.2
|
39.9
|
1.0
|
CD2
|
B:LEU306
|
4.2
|
49.5
|
1.0
|
CD1
|
B:PHE251
|
4.7
|
40.8
|
1.0
|
C10
|
B:KUI501
|
4.7
|
41.0
|
1.0
|
CB
|
B:ALA304
|
4.9
|
34.4
|
1.0
|
C9
|
B:KUI501
|
5.0
|
37.1
|
1.0
|
CE2
|
B:PHE251
|
5.0
|
43.1
|
1.0
|
|
Reference:
T.J.Hagenbeek,
J.R.Zbieg,
C.L.Noland,
X.Yao,
S.Schmidt,
S.Clausen,
M.Steffek,
W.Lee,
P.Beroza,
S.Martin,
E.Lin,
R.Fong,
P.Di Lello,
M.H.Kubala,
J.A.Lacap,
M.N.Y.Yang,
D.Maddalo,
J.T.Lau,
L.An,
E.Levy,
M.N.Lorenzo,
H.J.Lee,
T.H.Pham,
Z.Modrusan,
R.Zang,
Y.C.Chen,
J.Li,
M.Hafner,
M.T.Chang,
J.J.Crawford,
A.Dey.
Novel Mechanism of Yap-Tead Inhibition Results in Targeted Chromatin Remodeling and Reveals An Expanded Hippo Dependent Landscape in Cancers To Be Published.
Page generated: Fri Aug 2 13:45:45 2024
|