Fluorine in PDB 7tz6: Structure of Mitochondrial BC1 in Complex with Ck-2-68

Enzymatic activity of Structure of Mitochondrial BC1 in Complex with Ck-2-68

All present enzymatic activity of Structure of Mitochondrial BC1 in Complex with Ck-2-68:
1.10.2.2;

Other elements in 7tz6:

The structure of Structure of Mitochondrial BC1 in Complex with Ck-2-68 also contains other interesting chemical elements:

Iron (Fe) 10 atoms
Chlorine (Cl) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of Mitochondrial BC1 in Complex with Ck-2-68 (pdb code 7tz6). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Structure of Mitochondrial BC1 in Complex with Ck-2-68, PDB code: 7tz6:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 1 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1003

b:98.8
occ:1.00
 F2 C:JHB1003 0.0 98.8 1.0
C23 C:JHB1003 1.3 101.4 1.0
F1 C:JHB1003 2.2 98.9 1.0
F C:JHB1003 2.2 102.4 1.0
O1 C:JHB1003 2.2 103.8 1.0
C22 C:JHB1003 2.7 100.0 1.0
HB2 C:ALA125 2.9 71.1 1.0
O C:LEU121 3.3 70.2 1.0
C18 C:JHB1003 3.3 97.8 1.0
C21 C:JHB1003 3.4 97.4 1.0
H1 C:JHB1003 3.4 96.9 1.0
H3 C:JHB1003 3.5 96.0 1.0
HB3 C:LEU121 3.6 74.0 1.0
H C:ALA125 3.7 72.3 1.0
HB2 C:MET124 3.8 75.6 1.0
CB C:ALA125 3.8 68.7 1.0
HD22 C:LEU121 3.9 73.0 1.0
HA C:LEU121 4.0 73.8 1.0
N C:ALA125 4.0 72.8 1.0
HA C:ALA125 4.1 70.0 1.0
C C:LEU121 4.1 67.0 1.0
CA C:ALA125 4.2 68.6 1.0
HB3 C:MET124 4.3 76.0 1.0
HB3 C:ALA125 4.3 70.5 1.0
C19 C:JHB1003 4.3 97.8 1.0
CA C:LEU121 4.4 73.4 1.0
C20 C:JHB1003 4.4 101.0 1.0
CB C:LEU121 4.4 77.4 1.0
HB1 C:ALA125 4.4 70.2 1.0
CB C:MET124 4.5 72.0 1.0
CD2 C:LEU121 4.7 73.9 1.0
HD23 C:LEU121 4.7 74.3 1.0
C C:MET124 4.8 68.2 1.0
C17 C:JHB1003 4.8 100.1 1.0
H2 C:JHB1003 5.0 96.9 1.0

Fluorine binding site 2 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 2 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1003

b:102.4
occ:1.00
 F C:JHB1003 0.0 102.4 1.0
C23 C:JHB1003 1.3 101.4 1.0
F1 C:JHB1003 2.2 98.9 1.0
O1 C:JHB1003 2.2 103.8 1.0
F2 C:JHB1003 2.2 98.8 1.0
HB2 C:ALA125 2.8 71.1 1.0
C22 C:JHB1003 3.5 100.0 1.0
CB C:ALA125 3.7 68.7 1.0
HB1 C:ALA125 3.8 70.2 1.0
H1 C:JHB1003 4.2 96.9 1.0
H3 C:JHB1003 4.2 96.0 1.0
HB3 C:ALA125 4.3 70.5 1.0
C21 C:JHB1003 4.3 97.4 1.0
C18 C:JHB1003 4.3 97.8 1.0
HA C:ALA125 4.3 70.0 1.0
CA C:ALA125 4.6 68.6 1.0
O C:LEU121 4.7 70.2 1.0
H C:ALA125 4.8 72.3 1.0
HB3 C:LEU121 4.9 74.0 1.0

Fluorine binding site 3 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 3 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:F1003

b:98.9
occ:1.00
 F1 C:JHB1003 0.0 98.9 1.0
C23 C:JHB1003 1.3 101.4 1.0
F2 C:JHB1003 2.2 98.8 1.0
F C:JHB1003 2.2 102.4 1.0
O1 C:JHB1003 2.2 103.8 1.0
H1 C:JHB1003 2.6 96.9 1.0
C22 C:JHB1003 3.1 100.0 1.0
C18 C:JHB1003 3.1 97.8 1.0
HD22 C:LEU121 4.1 73.0 1.0
C21 C:JHB1003 4.3 97.4 1.0
C19 C:JHB1003 4.4 97.8 1.0
HB3 C:LEU121 4.4 74.0 1.0
HB2 C:ALA125 4.5 71.1 1.0
H3 C:JHB1003 4.7 96.0 1.0
H2 C:JHB1003 4.8 96.9 1.0

Fluorine binding site 4 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 4 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:F1003

b:79.4
occ:1.00
 F2 P:JHB1003 0.0 79.4 1.0
C23 P:JHB1003 1.3 80.6 1.0
F1 P:JHB1003 2.1 76.4 1.0
F P:JHB1003 2.2 82.0 1.0
O1 P:JHB1003 2.2 80.6 1.0
H1 P:JHB1003 2.8 76.7 1.0
C22 P:JHB1003 3.0 77.2 1.0
C18 P:JHB1003 3.1 79.9 1.0
HD22 P:LEU121 3.6 57.5 1.0
C21 P:JHB1003 4.1 74.9 1.0
HB3 P:LEU121 4.2 57.4 1.0
C19 P:JHB1003 4.3 78.3 1.0
H3 P:JHB1003 4.4 75.0 1.0
CD2 P:LEU121 4.5 61.3 1.0
HB2 P:ALA125 4.5 52.5 1.0
HD23 P:LEU121 4.7 57.6 1.0
H2 P:JHB1003 4.8 76.5 1.0

Fluorine binding site 5 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 5 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:F1003

b:82.0
occ:1.00
 F P:JHB1003 0.0 82.0 1.0
C23 P:JHB1003 1.3 80.6 1.0
F1 P:JHB1003 2.2 76.4 1.0
F2 P:JHB1003 2.2 79.4 1.0
O1 P:JHB1003 2.2 80.6 1.0
HB2 P:ALA125 3.2 52.5 1.0
C22 P:JHB1003 3.5 77.2 1.0
CB P:ALA125 4.1 52.2 1.0
H1 P:JHB1003 4.2 76.7 1.0
HB1 P:ALA125 4.2 51.7 1.0
H3 P:JHB1003 4.3 75.0 1.0
C18 P:JHB1003 4.3 79.9 1.0
C21 P:JHB1003 4.4 74.9 1.0
HA P:ALA125 4.7 52.3 1.0
HB3 P:ALA125 4.7 52.1 1.0
CA P:ALA125 4.9 51.5 1.0

Fluorine binding site 6 out of 6 in 7tz6

Go back to Fluorine Binding Sites List in 7tz6
Fluorine binding site 6 out of 6 in the Structure of Mitochondrial BC1 in Complex with Ck-2-68


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Structure of Mitochondrial BC1 in Complex with Ck-2-68 within 5.0Å range:
probe atom residue distance (Å) B Occ
P:F1003

b:76.4
occ:1.00
 F1 P:JHB1003 0.0 76.4 1.0
C23 P:JHB1003 1.3 80.6 1.0
F2 P:JHB1003 2.1 79.4 1.0
F P:JHB1003 2.2 82.0 1.0
O1 P:JHB1003 2.2 80.6 1.0
HB2 P:ALA125 2.6 52.5 1.0
C22 P:JHB1003 2.8 77.2 1.0
H3 P:JHB1003 3.2 75.0 1.0
O P:LEU121 3.3 52.2 1.0
C21 P:JHB1003 3.3 74.9 1.0
H P:ALA125 3.4 53.4 1.0
CB P:ALA125 3.5 52.2 1.0
C18 P:JHB1003 3.7 79.9 1.0
HB3 P:LEU121 3.7 57.4 1.0
N P:ALA125 3.8 54.6 1.0
HA P:ALA125 3.8 52.3 1.0
H1 P:JHB1003 3.9 76.7 1.0
HB2 P:MET124 3.9 58.3 1.0
CA P:ALA125 4.0 51.5 1.0
HB3 P:ALA125 4.0 52.1 1.0
HD22 P:LEU121 4.1 57.5 1.0
HB1 P:ALA125 4.1 51.7 1.0
C P:LEU121 4.2 54.6 1.0
HA P:LEU121 4.2 56.9 1.0
HB3 P:MET124 4.4 57.6 1.0
C20 P:JHB1003 4.4 76.7 1.0
CB P:LEU121 4.6 58.6 1.0
CA P:LEU121 4.6 54.9 1.0
CB P:MET124 4.6 54.6 1.0
HD23 P:LEU121 4.7 57.6 1.0
C P:MET124 4.7 50.4 1.0
C19 P:JHB1003 4.7 78.3 1.0
CD2 P:LEU121 4.8 61.3 1.0
HA P:THR122 4.9 56.1 1.0
H4 P:JHB1003 5.0 75.8 1.0

Reference:

D.Xia, L.Esser, F.Zhou. Conformation Switch of Rieske Isp Subunit Is Revealed By the Crystal Structure of Bacterial Cytochrome BC1 in Complex with Azoxystrobin To Be Published.
Page generated: Fri Aug 2 13:46:15 2024

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