Fluorine in PDB 7u3h: GID4 in Complex with Compound 7

The structure of GID4 in Complex with Compound 7, PDB code: 7u3h was solved by C.K.Chana, F.Sicheri, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.08 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	38.469, 40.534, 51.584, 90, 107.93, 90
R / Rfree (%)	18.2 / 22.4

The binding sites of Fluorine atom in the GID4 in Complex with Compound 7 (pdb code 7u3h). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the GID4 in Complex with Compound 7, PDB code: 7u3h:

Fluorine binding site 1 out of 1 in the GID4 in Complex with Compound 7


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of GID4 in Complex with Compound 7 within 5.0Å range: probe atom residue distance (Å) B Occ A:F301 b:43.6 occ:1.00 F11 A:L6O301 0.0 43.6 1.0 C10 A:L6O301 1.3 40.9 1.0 C09 A:L6O301 2.4 33.5 1.0 C12 A:L6O301 2.4 35.9 1.0 CB A:LEU171 3.2 35.2 1.0 CD1 A:LEU171 3.2 46.8 1.0 CD1 A:LEU240 3.5 42.2 1.0 C13 A:L6O301 3.6 35.4 1.0 C08 A:L6O301 3.6 36.2 1.0 CG A:LEU171 3.8 41.8 1.0 CG2 A:ILE249 4.0 60.0 1.0 C07 A:L6O301 4.1 35.9 1.0 CD2 A:LEU240 4.4 44.8 1.0 O A:HOH484 4.5 73.2 1.0 CA A:LEU171 4.5 34.4 1.0 CG A:LEU240 4.6 41.6 1.0 CD2 A:LEU171 4.6 43.6 1.0 C A:LEU171 4.7 36.1 1.0 CG1 A:ILE249 4.8 65.0 1.0 O A:LEU171 4.8 33.6 1.0

C.K.Chana, P.Maisonneuve, G.Posternak, N.G.A.Grinberg, J.Poirson, S.M.Ona, D.F.Ceccarelli, P.Mader, D.J.St-Cyr, V.Pau, I.Kurinov, X.Tang, D.Deng, W.Cui, W.Su, L.Kuai, R.Soll, M.Tyers, H.L.Rost, R.A.Batey, M.Taipale, A.C.Gingras, F.Sicheri. Discovery and Structural Characterization of Small Molecule Binders of the Human Ctlh E3 Ligase Subunit GID4. J.Med.Chem. V. 65 12725 2022.
ISSN: ISSN 0022-2623
PubMed: 36117290
DOI: 10.1021/ACS.JMEDCHEM.2C00509