Fluorine in PDB 7ua7: Crystal Structure of Indoline 9 with Kpc-2

Enzymatic activity of Crystal Structure of Indoline 9 with Kpc-2

All present enzymatic activity of Crystal Structure of Indoline 9 with Kpc-2:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of Indoline 9 with Kpc-2, PDB code: 7ua7 was solved by A.Akhtar, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.55 / 2.25
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.844, 58.747, 76.29, 90, 90, 90
R / Rfree (%) 17.7 / 23

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of Indoline 9 with Kpc-2 (pdb code 7ua7). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Crystal Structure of Indoline 9 with Kpc-2, PDB code: 7ua7:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7ua7

Go back to Fluorine Binding Sites List in 7ua7
Fluorine binding site 1 out of 3 in the Crystal Structure of Indoline 9 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Indoline 9 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F304

b:68.1
occ:0.76
F32 A:M53304 0.0 68.1 0.8
C31 A:M53304 1.3 72.9 0.8
F34 A:M53304 2.1 73.9 0.8
F33 A:M53304 2.1 78.7 0.8
C30 A:M53304 2.2 60.6 0.8
C29 A:M53304 2.8 54.8 0.8
C35 A:M53304 3.3 60.9 0.8
O A:GLY239 3.5 33.8 1.0
O A:HOH468 3.7 33.5 1.0
C28 A:M53304 4.1 57.4 0.8
CA A:GLY239 4.1 40.5 1.0
C A:GLY239 4.1 38.0 1.0
NZ A:LYS273 4.2 69.0 1.0
C26 A:M53304 4.5 58.2 0.8
ND1 A:HIS274 4.5 37.8 1.0
CE1 A:HIS274 4.5 31.9 1.0
CG A:LYS273 4.7 45.4 1.0
C27 A:M53304 4.8 55.4 0.8
CE A:LYS273 4.8 63.6 1.0
O A:HOH443 4.9 29.1 1.0

Fluorine binding site 2 out of 3 in 7ua7

Go back to Fluorine Binding Sites List in 7ua7
Fluorine binding site 2 out of 3 in the Crystal Structure of Indoline 9 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of Indoline 9 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F304

b:78.7
occ:0.76
F33 A:M53304 0.0 78.7 0.8
C31 A:M53304 1.3 72.9 0.8
F34 A:M53304 2.1 73.9 0.8
F32 A:M53304 2.1 68.1 0.8
C30 A:M53304 2.4 60.6 0.8
C29 A:M53304 3.0 54.8 0.8
C35 A:M53304 3.6 60.9 0.8
NZ A:LYS273 4.1 69.0 1.0
C28 A:M53304 4.3 57.4 0.8
C26 A:M53304 4.8 58.2 0.8
CE A:LYS273 4.9 63.6 1.0
O A:GLY239 4.9 33.8 1.0

Fluorine binding site 3 out of 3 in 7ua7

Go back to Fluorine Binding Sites List in 7ua7
Fluorine binding site 3 out of 3 in the Crystal Structure of Indoline 9 with Kpc-2


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of Indoline 9 with Kpc-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F304

b:73.9
occ:0.76
F34 A:M53304 0.0 73.9 0.8
C31 A:M53304 1.3 72.9 0.8
F32 A:M53304 2.1 68.1 0.8
F33 A:M53304 2.1 78.7 0.8
C30 A:M53304 2.3 60.6 0.8
C35 A:M53304 2.7 60.9 0.8
O A:GLY239 3.1 33.8 1.0
C29 A:M53304 3.5 54.8 0.8
C A:GLY239 3.9 38.0 1.0
CA A:GLY239 3.9 40.5 1.0
C26 A:M53304 4.1 58.2 0.8
C28 A:M53304 4.7 57.4 0.8
O36 A:M53304 4.7 55.6 0.8
C27 A:M53304 4.9 55.4 0.8
C25 A:M53304 5.0 52.7 0.8

Reference:

K.Defrees, E.M.Cambeis, Y.Chen, A.R.Renslo. Probing the Binding Hot Spots of Kpc-2 Carbapenemase Using Reversible Tetrazole-Based Inhibitors To Be Published.
Page generated: Fri Aug 2 13:58:56 2024

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