Fluorine in PDB 7vig: Cryo-Em Structure of Gi Coupled Sphingosine 1-Phosphate Receptor Bound with Cbp-307

The binding sites of Fluorine atom in the Cryo-Em Structure of Gi Coupled Sphingosine 1-Phosphate Receptor Bound with Cbp-307 (pdb code 7vig). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Cryo-Em Structure of Gi Coupled Sphingosine 1-Phosphate Receptor Bound with Cbp-307, PDB code: 7vig:

Fluorine binding site 1 out of 1 in the Cryo-Em Structure of Gi Coupled Sphingosine 1-Phosphate Receptor Bound with Cbp-307


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Gi Coupled Sphingosine 1-Phosphate Receptor Bound with Cbp-307 within 5.0Å range: probe atom residue distance (Å) B Occ F:F401 b:51.1 occ:1.00 F25 F:7I4401 0.0 51.1 1.0 C24 F:7I4401 1.3 51.1 1.0 C15 F:7I4401 2.2 51.1 1.0 ND2 F:ASN101 2.3 49.9 1.0 C26 F:7I4401 2.5 51.1 1.0 N17 F:7I4401 2.5 51.1 1.0 C16 F:7I4401 2.7 51.1 1.0 CG F:ASN101 3.2 49.9 1.0 OD1 F:ASN101 3.3 49.9 1.0 C23 F:7I4401 3.4 51.1 1.0 C14 F:7I4401 3.4 51.1 1.0 C12 F:7I4401 3.7 51.1 1.0 C18 F:7I4401 3.7 51.1 1.0 OE1 F:GLU121 3.9 45.3 1.0 NH1 F:ARG120 3.9 44.6 1.0 C13 F:7I4401 4.0 51.1 1.0 CD2 F:LEU297 4.2 53.7 1.0 OG F:SER105 4.4 46.2 1.0 C19 F:7I4401 4.4 51.1 1.0 OE2 F:GLU121 4.6 45.3 1.0 CB F:ASN101 4.6 49.9 1.0 CD F:GLU121 4.7 45.3 1.0 CE F:MET124 4.8 49.3 1.0

L.Yu, L.He, B.Gan, R.Ti, Q.Xiao, H.Hu, L.Zhu, S.Wang, R.Ren. Structural Insights Into Sphingosine-1-Phosphate Receptor Activation. Proc.Natl.Acad.Sci.Usa V. 119 16119 2022.
ISSN: ESSN 1091-6490
PubMed: 35412894
DOI: 10.1073/PNAS.2117716119