Fluorine in PDB 7w1m: Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex

The structure of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex also contains other interesting chemical elements:

Zinc

(Zn)

11 atoms

The binding sites of Fluorine atom in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex (pdb code 7w1m). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex, PDB code: 7w1m:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1301 b:105.2 occ:1.00 F1 B:BEF1301 0.0 105.2 1.0 BE B:BEF1301 1.8 105.2 1.0 CB B:SER1116 2.3 96.1 1.0 OG B:SER1116 2.3 96.1 1.0 O2B A:ADP2001 2.3 131.3 1.0 CA B:SER1116 2.8 96.1 1.0 F3 B:BEF1301 3.1 105.2 1.0 F2 B:BEF1301 3.1 105.2 1.0 N B:GLY1117 3.2 87.4 1.0 PB A:ADP2001 3.3 131.3 1.0 O3B A:ADP2001 3.3 131.3 1.0 C B:SER1116 3.5 96.1 1.0 O1B A:ADP2001 4.0 131.3 1.0 N B:SER1116 4.0 96.1 1.0 NH1 A:ARG57 4.3 95.9 1.0 NH2 A:ARG57 4.3 95.9 1.0 N A:GLY35 4.4 112.4 1.0 CA B:GLY1117 4.4 87.4 1.0 O3A A:ADP2001 4.6 131.3 1.0 O B:SER1116 4.7 96.1 1.0 O B:LEU1115 4.7 105.1 1.0 C B:LEU1115 4.8 105.1 1.0 CZ A:ARG57 4.8 95.9 1.0 O5' A:ADP2001 4.8 131.3 1.0 N B:GLY1118 4.9 81.8 1.0 CA A:GLY35 4.9 112.4 1.0 OG A:SER39 4.9 92.0 1.0

Fluorine binding site 2 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1301 b:105.2 occ:1.00 F2 B:BEF1301 0.0 105.2 1.0 BE B:BEF1301 1.8 105.2 1.0 NZ A:LYS38 2.5 110.0 1.0 O3B A:ADP2001 2.6 131.3 1.0 F1 B:BEF1301 3.1 105.2 1.0 F3 B:BEF1301 3.1 105.2 1.0 O1B A:ADP2001 3.2 131.3 1.0 PB A:ADP2001 3.2 131.3 1.0 N A:GLY35 3.2 112.4 1.0 O A:PRO33 3.5 138.2 1.0 CE A:LYS38 3.6 110.0 1.0 OG B:SER1116 3.6 96.1 1.0 O2B A:ADP2001 3.6 131.3 1.0 N A:SER36 3.7 122.3 1.0 CA A:ASN34 3.9 124.2 1.0 C A:ASN34 3.9 124.2 1.0 CA A:GLY35 4.0 112.4 1.0 CB B:SER1116 4.2 96.1 1.0 C A:GLY35 4.3 112.4 1.0 C A:PRO33 4.4 138.2 1.0 N A:GLY37 4.5 132.5 1.0 N A:ASN34 4.6 124.2 1.0 CA A:SER36 4.7 122.3 1.0 O3A A:ADP2001 4.7 131.3 1.0 CD A:LYS38 4.8 110.0 1.0 CB A:SER36 4.8 122.3 1.0 CG A:LYS38 4.8 110.0 1.0 CB A:LYS38 4.9 110.0 1.0 N A:LYS38 5.0 110.0 1.0 OG A:SER36 5.0 122.3 1.0 O A:ASN34 5.0 124.2 1.0 CB A:ASN34 5.0 124.2 1.0

Fluorine binding site 3 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1301 b:105.2 occ:1.00 F3 B:BEF1301 0.0 105.2 1.0 BE B:BEF1301 1.8 105.2 1.0 F1 B:BEF1301 3.1 105.2 1.0 F2 B:BEF1301 3.1 105.2 1.0 O1B A:ADP2001 3.2 131.3 1.0 O2B A:ADP2001 3.3 131.3 1.0 PB A:ADP2001 3.7 131.3 1.0 OE2 A:GLU1157 3.7 89.2 1.0 CD1 A:ILE1187 4.1 128.6 1.0 O3B A:ADP2001 4.3 131.3 1.0 CB A:SER39 4.3 92.0 1.0 OG A:SER39 4.3 92.0 1.0 OE1 A:GLN137 4.4 50.9 1.0 NZ A:LYS38 4.4 110.0 1.0 CE A:LYS38 4.5 110.0 1.0 N A:SER39 4.6 92.0 1.0 CD A:GLU1157 4.6 89.2 1.0 OG B:SER1116 5.0 96.1 1.0

Fluorine binding site 4 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1303 b:49.6 occ:1.00 F1 B:BEF1303 0.0 49.6 1.0 BE B:BEF1303 1.8 49.6 1.0 NE2 B:GLN141 2.5 40.0 1.0 O3B B:ADP1302 2.7 89.5 1.0 F3 B:BEF1303 3.1 49.6 1.0 F2 B:BEF1303 3.1 49.6 1.0 CB B:LYS38 3.4 42.5 1.0 CD B:GLN141 3.7 40.0 1.0 PB B:ADP1302 4.0 89.5 1.0 N B:SER39 4.1 39.1 1.0 OG B:SER39 4.1 39.1 1.0 CG B:LYS38 4.2 42.5 1.0 N B:LYS38 4.2 42.5 1.0 OE1 B:GLN141 4.2 40.0 1.0 CA B:LYS38 4.2 42.5 1.0 O1B B:ADP1302 4.3 89.5 1.0 C B:LYS38 4.5 42.5 1.0 OD1 B:ASP1143 4.5 92.5 1.0 CG B:GLN141 4.8 40.0 1.0 O2B B:ADP1302 4.8 89.5 1.0

Fluorine binding site 5 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1303 b:49.6 occ:1.00 F2 B:BEF1303 0.0 49.6 1.0 BE B:BEF1303 1.8 49.6 1.0 N B:SER36 2.2 104.9 1.0 O3B B:ADP1302 2.6 89.5 1.0 CB B:SER36 2.7 104.9 1.0 CA B:SER36 2.8 104.9 1.0 N B:GLY37 3.0 57.1 1.0 F1 B:BEF1303 3.1 49.6 1.0 F3 B:BEF1303 3.1 49.6 1.0 C B:GLY35 3.2 82.1 1.0 C B:SER36 3.2 104.9 1.0 OG B:SER36 3.4 104.9 1.0 N B:LYS38 3.6 42.5 1.0 O B:ARG33 3.7 118.9 1.0 N B:GLY35 3.7 82.1 1.0 CA B:GLY35 3.8 82.1 1.0 PB B:ADP1302 3.9 89.5 1.0 CB B:LYS38 4.0 42.5 1.0 O3A B:ADP1302 4.0 89.5 1.0 O B:GLY35 4.2 82.1 1.0 CA B:GLY37 4.2 57.1 1.0 O B:SER36 4.3 104.9 1.0 C B:GLY37 4.4 57.1 1.0 CA B:LYS38 4.5 42.5 1.0 C B:ASN34 4.5 84.6 1.0 O2B B:ADP1302 4.7 89.5 1.0 C B:ARG33 4.9 118.9 1.0 NE2 B:GLN141 4.9 40.0 1.0 O1B B:ADP1302 4.9 89.5 1.0

Fluorine binding site 6 out of 6 in the Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Cryo-Em Structure of Human Cohesin-Ctcf-Dna Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:F1303 b:49.6 occ:1.00 F3 B:BEF1303 0.0 49.6 1.0 BE B:BEF1303 1.8 49.6 1.0 OG A:SER1129 2.6 194.6 1.0 NE2 B:GLN141 3.0 40.0 1.0 F1 B:BEF1303 3.1 49.6 1.0 F2 B:BEF1303 3.1 49.6 1.0 O3B B:ADP1302 3.1 89.5 1.0 N B:GLY35 3.3 82.1 1.0 CB A:SER1129 3.5 194.6 1.0 OE1 B:GLN141 3.5 40.0 1.0 CD B:GLN141 3.6 40.0 1.0 CA B:GLY35 3.9 82.1 1.0 PB B:ADP1302 4.1 89.5 1.0 O1B B:ADP1302 4.1 89.5 1.0 N B:SER36 4.2 104.9 1.0 O3A B:ADP1302 4.3 89.5 1.0 C B:ASN34 4.4 84.6 1.0 C B:GLY35 4.5 82.1 1.0 CA B:ASN34 4.5 84.6 1.0 O B:ARG33 4.7 118.9 1.0 CA A:SER1129 4.8 194.6 1.0 CG B:GLN141 5.0 40.0 1.0

H.Zhang, Z.Shi, X.C.Bai, H.Yu, I.J.Finkelstein. Cryo-Em Structure of Human Cohesin-Ctcf Complex To Be Published.