Fluorine in PDB 7x22: Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State

All present enzymatic activity of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State:
7.2.2.13; 7.2.2.19;

The structure of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Potassium	(K)	3 atoms
Aluminium	(Al)	1 atom

The binding sites of Fluorine atom in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State (pdb code 7x22). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State, PDB code: 7x22:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:84.5 occ:1.00 F1 A:ALF1101 0.0 84.5 1.0 AL A:ALF1101 1.8 84.5 1.0 MG A:MG1102 2.0 85.8 1.0 O A:THR390 2.2 81.1 1.0 OD2 A:ASP388 2.4 77.8 1.0 F4 A:ALF1101 2.5 84.5 1.0 F3 A:ALF1101 2.6 84.5 1.0 CB A:THR390 2.9 81.1 1.0 C A:THR390 3.0 81.1 1.0 CG A:ASP388 3.1 77.8 1.0 CA A:THR390 3.2 81.1 1.0 OD1 A:ASP388 3.2 77.8 1.0 N A:THR390 3.3 81.1 1.0 CG2 A:THR390 3.5 81.1 1.0 O A:GLY232 3.5 88.9 1.0 F2 A:ALF1101 3.6 84.5 1.0 OG1 A:THR390 4.1 81.1 1.0 OD1 A:ASP729 4.2 84.8 1.0 N A:GLY391 4.3 80.2 1.0 C A:GLY232 4.3 88.9 1.0 C A:LYS389 4.4 78.6 1.0 OE2 A:GLU233 4.5 93.5 1.0 CA A:GLY232 4.5 88.9 1.0 CB A:ASP388 4.6 77.8 1.0 N A:LYS389 4.7 78.6 1.0 CA A:GLY391 4.9 80.2 1.0

Fluorine binding site 2 out of 4 in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:84.5 occ:1.00 F2 A:ALF1101 0.0 84.5 1.0 AL A:ALF1101 1.8 84.5 1.0 F3 A:ALF1101 2.5 84.5 1.0 F4 A:ALF1101 2.6 84.5 1.0 OD1 A:ASP388 2.6 77.8 1.0 ND2 A:ASN732 3.0 84.7 1.0 CG A:ASP388 3.3 77.8 1.0 OD2 A:ASP388 3.5 77.8 1.0 O A:THR231 3.6 87.5 1.0 F1 A:ALF1101 3.6 84.5 1.0 CE A:LYS710 3.7 79.8 1.0 N A:GLY630 3.7 85.5 1.0 NZ A:LYS710 3.8 79.8 1.0 CG A:ASN732 3.9 84.7 1.0 OD1 A:ASP733 4.0 85.0 1.0 OD1 A:ASN732 4.2 84.7 1.0 MG A:MG1102 4.3 85.8 1.0 CA A:THR629 4.4 81.2 1.0 CB A:ASP388 4.4 77.8 1.0 CA A:GLY232 4.5 88.9 1.0 CA A:GLY630 4.5 85.5 1.0 C A:THR629 4.5 81.2 1.0 C A:THR231 4.5 87.5 1.0 OG1 A:THR629 4.7 81.2 1.0 OD2 A:ASP733 4.7 85.0 1.0 CG A:ASP733 4.8 85.0 1.0 N A:GLY232 4.9 88.9 1.0 O A:VAL628 5.0 75.5 1.0

Fluorine binding site 3 out of 4 in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:84.5 occ:1.00 F3 A:ALF1101 0.0 84.5 1.0 AL A:ALF1101 1.8 84.5 1.0 F2 A:ALF1101 2.5 84.5 1.0 F1 A:ALF1101 2.6 84.5 1.0 OD1 A:ASP388 2.6 77.8 1.0 OG1 A:THR629 3.2 81.2 1.0 CG A:ASP388 3.4 77.8 1.0 OE2 A:GLU233 3.5 93.5 1.0 N A:THR390 3.5 81.1 1.0 OD2 A:ASP388 3.6 77.8 1.0 F4 A:ALF1101 3.6 84.5 1.0 CB A:THR390 3.7 81.1 1.0 N A:GLY630 3.7 85.5 1.0 O A:THR231 4.1 87.5 1.0 OG1 A:THR390 4.1 81.1 1.0 N A:LYS389 4.2 78.6 1.0 CA A:THR390 4.2 81.1 1.0 CB A:THR629 4.2 81.2 1.0 MG A:MG1102 4.3 85.8 1.0 CA A:THR629 4.3 81.2 1.0 O A:THR390 4.4 81.1 1.0 CB A:LYS389 4.5 78.6 1.0 O A:GLY232 4.5 88.9 1.0 CD A:GLU233 4.5 93.5 1.0 C A:LYS389 4.5 78.6 1.0 C A:THR629 4.6 81.2 1.0 CA A:GLY630 4.6 85.5 1.0 CA A:LYS389 4.6 78.6 1.0 C A:GLY232 4.7 88.9 1.0 N A:ASP631 4.8 88.5 1.0 C A:THR390 4.8 81.1 1.0 CA A:GLY232 4.9 88.9 1.0 C A:GLY630 4.9 85.5 1.0 CB A:ASP388 4.9 77.8 1.0 CG2 A:THR390 4.9 81.1 1.0 CG A:GLU233 4.9 93.5 1.0

Fluorine binding site 4 out of 4 in the Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Non Gastric H,K-Atpase ALPHA2 K794S in (2K+)E2- Alf State within 5.0Å range: probe atom residue distance (Å) B Occ A:F1101 b:84.5 occ:1.00 F4 A:ALF1101 0.0 84.5 1.0 AL A:ALF1101 1.8 84.5 1.0 MG A:MG1102 2.1 85.8 1.0 OD2 A:ASP388 2.2 77.8 1.0 F1 A:ALF1101 2.5 84.5 1.0 F2 A:ALF1101 2.6 84.5 1.0 CG A:ASP388 3.0 77.8 1.0 OD2 A:ASP733 3.2 85.0 1.0 OD1 A:ASP388 3.3 77.8 1.0 OD1 A:ASN732 3.5 84.7 1.0 F3 A:ALF1101 3.6 84.5 1.0 ND2 A:ASN732 3.7 84.7 1.0 OD1 A:ASP733 3.8 85.0 1.0 OD1 A:ASP729 3.9 84.8 1.0 CG A:ASP733 3.9 85.0 1.0 CG A:ASN732 4.0 84.7 1.0 O A:THR390 4.1 81.1 1.0 CA A:GLY232 4.1 88.9 1.0 CB A:ASP388 4.1 77.8 1.0 CA A:GLY730 4.4 84.9 1.0 O A:GLY232 4.4 88.9 1.0 N A:GLY730 4.4 84.9 1.0 C A:GLY232 4.7 88.9 1.0 O A:THR231 4.8 87.5 1.0

V.C.Young, H.Nakanishi, D.J.Meyer, T.Nishizawa, A.Oshima, P.Artigas, K.Abe. Structure and Function of H + /K + Pump Mutants Reveal Na + /K + Pump Mechanisms. Nat Commun V. 13 5270 2022.
ISSN: ESSN 2041-1723
PubMed: 36085139
DOI: 10.1038/S41467-022-32793-0