Fluorine in PDB 7xha: Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-.

All present enzymatic activity of Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-.:
7.4.2.8;

The structure of Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-. (pdb code 7xha). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-., PDB code: 7xha:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-. within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F1 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.6 45.8 1.0 O1B A:ADP1003 2.0 59.3 1.0 F3 A:BEF1002 2.5 45.8 1.0 F2 A:BEF1002 2.6 45.8 1.0 CG2 A:THR102 3.2 36.9 1.0 NH2 A:ARG525 3.3 28.4 1.0 PB A:ADP1003 3.5 59.3 1.0 NH1 A:ARG528 3.6 38.4 1.0 NH2 A:ARG528 3.7 38.4 1.0 N A:GLY103 3.7 42.5 1.0 C A:THR102 4.0 36.9 1.0 CZ A:ARG528 4.1 38.4 1.0 CA A:THR102 4.1 36.9 1.0 CA A:GLY103 4.2 42.5 1.0 O2B A:ADP1003 4.2 59.3 1.0 CB A:THR102 4.3 36.9 1.0 O3A A:ADP1003 4.3 59.3 1.0 NZ A:LYS106 4.4 33.9 1.0 O3B A:ADP1003 4.4 59.3 1.0 CZ A:ARG525 4.6 28.4 1.0 CA A:GLY490 4.6 28.0 1.0 O A:THR102 4.7 36.9 1.0 MG A:MG1001 4.7 42.0 1.0 OE1 A:GLN521 4.7 29.0 1.0 N A:GLY490 4.8 28.0 1.0 OE2 A:GLU208 4.9 30.4 1.0 C A:GLY490 4.9 28.0 1.0 O A:GLY490 5.0 28.0 1.0

Fluorine binding site 2 out of 3 in the Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-. within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F2 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.6 45.8 1.0 NZ A:LYS106 2.4 33.9 1.0 F1 A:BEF1002 2.6 45.8 1.0 F3 A:BEF1002 2.6 45.8 1.0 O1B A:ADP1003 2.9 59.3 1.0 CE A:LYS106 3.2 33.9 1.0 OE2 A:GLU208 3.8 30.4 1.0 CG2 A:THR102 3.8 36.9 1.0 PB A:ADP1003 3.9 59.3 1.0 CA A:THR102 3.9 36.9 1.0 CD A:LYS106 4.1 33.9 1.0 O3B A:ADP1003 4.2 59.3 1.0 N A:GLY103 4.2 42.5 1.0 CB A:THR102 4.4 36.9 1.0 C A:THR102 4.5 36.9 1.0 CA A:GLY372 4.5 32.7 1.0 O2B A:ADP1003 4.5 59.3 1.0 N A:GLY372 4.5 32.7 1.0 CB A:LYS106 4.6 33.9 1.0 OG1 A:THR102 4.7 36.9 1.0 C A:THR371 4.8 32.0 1.0 O A:LYS101 4.8 35.0 1.0 MG A:MG1001 4.8 42.0 1.0 CD A:GLU208 4.9 30.4 1.0 OE1 A:GLN521 4.9 29.0 1.0 N A:THR102 4.9 36.9 1.0 O A:THR371 4.9 32.0 1.0

Fluorine binding site 3 out of 3 in the Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Seca/Secye/Proompa(4Y)-Sfgfp Complex with Adp.BEF3-. within 5.0Å range: probe atom residue distance (Å) B Occ A:F1002 b:45.8 occ:1.00 F3 A:BEF1002 0.0 45.8 1.0 BE A:BEF1002 1.5 45.8 1.0 F1 A:BEF1002 2.5 45.8 1.0 MG A:MG1001 2.6 42.0 1.0 O1B A:ADP1003 2.6 59.3 1.0 F2 A:BEF1002 2.6 45.8 1.0 OE2 A:GLU208 3.2 30.4 1.0 O2B A:ADP1003 3.2 59.3 1.0 PB A:ADP1003 3.4 59.3 1.0 CA A:GLY490 3.6 28.0 1.0 NZ A:LYS106 4.2 33.9 1.0 O A:GLY490 4.2 28.0 1.0 N A:GLY490 4.3 28.0 1.0 C A:GLY490 4.3 28.0 1.0 O3B A:ADP1003 4.4 59.3 1.0 CD A:GLU208 4.4 30.4 1.0 O3A A:ADP1003 4.6 59.3 1.0 NH2 A:ARG525 4.8 28.4 1.0

L.Dong, S.Yang, J.Chen, X.Wu, D.Sun, C.Song, L.Li. Structural Basis of Seca-Mediated Protein Translocation Proc.Natl.Acad.Sci.Usa V. 120 2023.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.2208070120