Fluorine in PDB 7xmg: Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752

The binding sites of Fluorine atom in the Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752 (pdb code 7xmg). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752, PDB code: 7xmg:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752 within 5.0Å range: probe atom residue distance (Å) B Occ A:F2302 b:47.2 occ:1.00 F01 A:G4I2302 0.0 47.2 1.0 C35 A:G4I2302 1.4 47.2 1.0 F02 A:G4I2302 2.2 47.2 1.0 F03 A:G4I2302 2.2 47.2 1.0 O05 A:G4I2302 2.3 47.2 1.0 C28 A:G4I2302 2.6 47.2 1.0 C25 A:G4I2302 3.1 47.2 1.0 CD1 A:LEU1400 3.3 32.1 1.0 C26 A:G4I2302 3.5 47.2 1.0 C22 A:G4I2302 4.1 47.2 1.0 CD2 A:LEU1449 4.2 53.7 1.0 CG2 A:THR1404 4.2 30.8 1.0 C23 A:G4I2302 4.4 47.2 1.0 CH2 A:TRP1332 4.4 46.4 1.0 CD1 A:LEU1449 4.5 53.7 1.0 C20 A:G4I2302 4.7 47.2 1.0 CG A:LEU1400 4.7 32.1 1.0

Fluorine binding site 2 out of 3 in the Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752 within 5.0Å range: probe atom residue distance (Å) B Occ A:F2302 b:47.2 occ:1.00 F02 A:G4I2302 0.0 47.2 1.0 C35 A:G4I2302 1.4 47.2 1.0 F01 A:G4I2302 2.2 47.2 1.0 F03 A:G4I2302 2.2 47.2 1.0 O05 A:G4I2302 2.2 47.2 1.0 C28 A:G4I2302 2.9 47.2 1.0 C26 A:G4I2302 3.1 47.2 1.0 CD1 A:LEU1400 3.1 32.1 1.0 CG1 A:ILE1745 3.4 38.4 1.0 C25 A:G4I2302 4.1 47.2 1.0 CD1 A:ILE1744 4.2 36.9 1.0 CD1 A:ILE1745 4.2 38.4 1.0 CG1 A:ILE1744 4.2 36.9 1.0 CG A:LEU1400 4.2 32.1 1.0 CD2 A:LEU1400 4.3 32.1 1.0 C23 A:G4I2302 4.3 47.2 1.0 CA A:ILE1745 4.5 38.4 1.0 CB A:ILE1745 4.5 38.4 1.0 N A:ILE1745 4.7 38.4 1.0 CG2 A:THR1404 4.8 30.8 1.0 C A:ILE1744 4.9 36.9 1.0 O A:ILE1744 5.0 36.9 1.0

Fluorine binding site 3 out of 3 in the Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Human NAV1.7/BETA1/BETA2-Tcn-1752 within 5.0Å range: probe atom residue distance (Å) B Occ A:F2302 b:47.2 occ:1.00 F03 A:G4I2302 0.0 47.2 1.0 C35 A:G4I2302 1.4 47.2 1.0 F02 A:G4I2302 2.2 47.2 1.0 F01 A:G4I2302 2.2 47.2 1.0 O05 A:G4I2302 2.2 47.2 1.0 C28 A:G4I2302 3.5 47.2 1.0 CG1 A:ILE1745 4.1 38.4 1.0 CD1 A:LEU1400 4.3 32.1 1.0 C25 A:G4I2302 4.3 47.2 1.0 C26 A:G4I2302 4.4 47.2 1.0 CE2 A:PHE1452 4.6 56.9 1.0 CD1 A:ILE1745 4.6 38.4 1.0 CD1 A:PHE1748 4.8 45.6 1.0 CD2 A:LEU1449 4.8 53.7 1.0

J.Zhang, Y.Shi, Z.Huang, Y.Li, B.Yang, J.Gong, D.Jiang. Structural Basis For Na V 1.7 Inhibition By Pore Blockers. Nat.Struct.Mol.Biol. V. 29 1208 2022.
ISSN: ESSN 1545-9985
PubMed: 36424527
DOI: 10.1038/S41594-022-00860-1