Fluorine in PDB 7y8r: The Nucleosome-Bound Human Pbaf Complex

The structure of The Nucleosome-Bound Human Pbaf Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Fluorine atom in the The Nucleosome-Bound Human Pbaf Complex (pdb code 7y8r). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the The Nucleosome-Bound Human Pbaf Complex, PDB code: 7y8r:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in the The Nucleosome-Bound Human Pbaf Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of The Nucleosome-Bound Human Pbaf Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:F1703 b:20.0 occ:1.00 F1 I:BEF1703 0.0 20.0 1.0 BE I:BEF1703 1.5 20.0 1.0 F3 I:BEF1703 2.5 20.0 1.0 O3B I:ADP1701 2.6 20.0 1.0 F2 I:BEF1703 2.6 20.0 1.0 N I:GLY782 3.0 65.9 1.0 O I:LEU783 3.2 67.8 1.0 CD I:LYS785 3.2 59.6 1.0 N I:LEU783 3.4 67.8 1.0 CA I:GLY782 3.6 65.9 1.0 NH1 I:ARG1192 3.7 64.3 1.0 C I:GLY782 3.8 65.9 1.0 PB I:ADP1701 3.9 20.0 1.0 C I:MET781 3.9 71.2 1.0 CA I:MET781 4.0 71.2 1.0 NH2 I:ARG1192 4.1 64.3 1.0 C I:LEU783 4.1 67.8 1.0 NZ I:LYS785 4.2 59.6 1.0 CG I:LYS785 4.3 59.6 1.0 CA I:LEU783 4.3 67.8 1.0 CE I:LYS785 4.3 59.6 1.0 O1B I:ADP1701 4.3 20.0 1.0 O I:GLU780 4.4 68.6 1.0 CZ I:ARG1192 4.4 64.3 1.0 NH2 I:ARG1189 4.6 67.4 1.0 O2B I:ADP1701 4.6 20.0 1.0 NH1 I:ARG1189 4.7 67.4 1.0 O2A I:ADP1701 4.7 20.0 1.0 O I:GLY782 4.9 65.9 1.0 CB I:MET781 4.9 71.2 1.0 CB I:LEU783 5.0 67.8 1.0 O3A I:ADP1701 5.0 20.0 1.0

Fluorine binding site 2 out of 3 in the The Nucleosome-Bound Human Pbaf Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of The Nucleosome-Bound Human Pbaf Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:F1703 b:20.0 occ:1.00 F2 I:BEF1703 0.0 20.0 1.0 O3B I:ADP1701 1.5 20.0 1.0 BE I:BEF1703 1.6 20.0 1.0 NH1 I:ARG1192 2.3 64.3 1.0 O2A I:ADP1701 2.5 20.0 1.0 F3 I:BEF1703 2.5 20.0 1.0 F1 I:BEF1703 2.6 20.0 1.0 PB I:ADP1701 2.6 20.0 1.0 NH2 I:ARG1192 2.7 64.3 1.0 CZ I:ARG1192 2.8 64.3 1.0 O2B I:ADP1701 3.0 20.0 1.0 O3A I:ADP1701 3.4 20.0 1.0 PA I:ADP1701 3.4 20.0 1.0 O1B I:ADP1701 3.9 20.0 1.0 NH2 I:ARG1189 3.9 67.4 1.0 NE I:ARG1192 4.0 64.3 1.0 O I:LEU783 4.0 67.8 1.0 O1A I:ADP1701 4.1 20.0 1.0 O I:LEU1163 4.4 54.4 1.0 N I:GLY782 4.5 65.9 1.0 CA I:GLY782 4.5 65.9 1.0 C I:GLY782 4.7 65.9 1.0 O5' I:ADP1701 4.8 20.0 1.0 N I:LEU783 4.8 67.8 1.0 CD I:ARG1192 4.8 64.3 1.0 CZ I:ARG1189 4.9 67.4 1.0 CA I:GLY1162 4.9 54.7 1.0 C I:LEU783 5.0 67.8 1.0

Fluorine binding site 3 out of 3 in the The Nucleosome-Bound Human Pbaf Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of The Nucleosome-Bound Human Pbaf Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:F1703 b:20.0 occ:1.00 F3 I:BEF1703 0.0 20.0 1.0 BE I:BEF1703 1.5 20.0 1.0 F2 I:BEF1703 2.5 20.0 1.0 F1 I:BEF1703 2.5 20.0 1.0 O3B I:ADP1701 2.6 20.0 1.0 O2B I:ADP1701 3.0 20.0 1.0 NZ I:LYS785 3.0 59.6 1.0 MG I:MG1702 3.1 21.3 1.0 PB I:ADP1701 3.1 20.0 1.0 CD I:LYS785 3.3 59.6 1.0 CE I:LYS785 3.7 59.6 1.0 O1B I:ADP1701 3.8 20.0 1.0 OE2 I:GLU882 4.2 51.5 1.0 O I:LEU783 4.3 67.8 1.0 NH2 I:ARG1189 4.3 67.4 1.0 CG I:LYS785 4.4 59.6 1.0 CA I:GLY1162 4.5 54.7 1.0 CB I:LYS785 4.5 59.6 1.0 O3A I:ADP1701 4.6 20.0 1.0 NH1 I:ARG1192 4.7 64.3 1.0 NH2 I:ARG1192 4.7 64.3 1.0 O2A I:ADP1701 4.8 20.0 1.0 N I:GLY1162 4.9 54.7 1.0

L.Wang, J.Yu, Z.Yu, Q.Wang, W.Li, Y.Ren, Z.Chen, S.He, Y.Xu. Structure of Nucleosome-Bound Human Pbaf Complex. Nat Commun V. 13 7644 2022.
ISSN: ESSN 2041-1723
PubMed: 36496390
DOI: 10.1038/S41467-022-34859-5