Fluorine in PDB 7yxc: Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment

The structure of Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment, PDB code: 7yxc was solved by A.Jimenez-Panizo, E.Estebanez-Perpina, P.Fuentes-Prior, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.42 / 2.25
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.605, 52.435, 69.6, 90, 116.62, 90
R / Rfree (%)	19.3 / 24.5

The binding sites of Fluorine atom in the Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment (pdb code 7yxc). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total only one binding site of Fluorine was determined in the Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment, PDB code: 7yxc:

Fluorine binding site 1 out of 1 in the Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of Wt ANCGR2-Lbd Bound to Dexamethasone and Shp Coregulator Fragment within 5.0Å range: probe atom residue distance (Å) B Occ A:F1001 b:46.9 occ:1.00 F1 A:DEX1001 0.0 46.9 1.0 C9 A:DEX1001 1.4 44.1 1.0 C11 A:DEX1001 2.3 38.5 1.0 C8 A:DEX1001 2.3 43.9 1.0 C10 A:DEX1001 2.4 40.6 1.0 C7 A:DEX1001 2.8 42.1 1.0 C5 A:DEX1001 2.8 39.3 1.0 C14 A:DEX1001 2.8 44.6 1.0 C1 A:DEX1001 2.9 40.6 1.0 C12 A:DEX1001 2.9 39.1 1.0 C6 A:DEX1001 3.3 35.2 1.0 C4 A:DEX1001 3.5 34.9 1.0 C2 A:DEX1001 3.5 37.8 1.0 C13 A:DEX1001 3.5 48.9 1.0 O2 A:DEX1001 3.5 35.0 1.0 CE1 A:PHE623 3.7 37.3 1.0 C19 A:DEX1001 3.8 38.9 1.0 C3 A:DEX1001 3.8 37.3 1.0 CD1 A:PHE623 4.2 31.9 1.0 CB A:LEU563 4.2 40.8 1.0 C15 A:DEX1001 4.3 45.5 1.0 O3 A:DEX1001 4.3 45.1 1.0 CD1 A:LEU563 4.4 46.3 1.0 C18 A:DEX1001 4.6 38.2 1.0 C17 A:DEX1001 4.6 48.4 1.0 CD2 A:LEU563 4.6 36.0 1.0 CG A:LEU563 4.6 38.4 1.0 CZ A:PHE623 4.7 31.5 1.0 O1 A:DEX1001 4.9 43.3 1.0 SD A:MET646 4.9 59.3 1.0 O A:LEU563 4.9 43.4 1.0

A.Jimenez-Panizo, A.Alegre-Marti, T.T.Tettey, G.Fettweis, M.Abella, R.Anton, T.A.Johnson, S.Kim, R.L.Schiltz, I.Nunez-Barrios, J.Font-Diaz, C.Caelles, A.F.Valledor, P.Perez, A.M.Rojas, J.Fernandez-Recio, D.M.Presman, G.L.Hager, P.Fuentes-Prior, E.Estebanez-Perpina. The Multivalency of the Glucocorticoid Receptor Ligand-Binding Domain Explains Its Manifold Physiological Activities. Nucleic Acids Res. 2022.
ISSN: ESSN 1362-4962
PubMed: 36464162
DOI: 10.1093/NAR/GKAC1119