Fluorine in PDB 7yzq: Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Protein crystallography data
The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex, PDB code: 7yzq
was solved by
J.-H.Jeoung,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
46.16 /
1.96
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.032,
81.587,
121.485,
100.83,
96.92,
90.17
|
R / Rfree (%)
|
17.8 /
22.3
|
Other elements in 7yzq:
The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex also contains other interesting chemical elements:
Fluorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Fluorine atom in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
(pdb code 7yzq). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the
Mgadp-ALF4-Bound Dccp:Dccp-R Complex, PDB code: 7yzq:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 1 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F303
b:14.4
occ:1.00
|
F1
|
E:ALF303
|
0.0
|
14.4
|
1.0
|
AL
|
E:ALF303
|
1.8
|
14.6
|
1.0
|
HZ1
|
E:LYS96
|
2.1
|
17.2
|
1.0
|
H
|
E:ASP94
|
2.2
|
15.0
|
1.0
|
HA3
|
E:GLY91
|
2.2
|
16.9
|
1.0
|
F3
|
E:ALF303
|
2.5
|
12.6
|
1.0
|
F4
|
E:ALF303
|
2.5
|
15.2
|
1.0
|
H
|
E:GLN93
|
2.6
|
13.0
|
1.0
|
O3B
|
E:ADP301
|
2.7
|
14.1
|
1.0
|
O
|
E:HOH417
|
2.8
|
13.9
|
1.0
|
NZ
|
E:LYS96
|
2.9
|
14.4
|
1.0
|
HB2
|
E:ASP94
|
3.0
|
16.6
|
1.0
|
HZ3
|
E:LYS96
|
3.0
|
17.2
|
1.0
|
N
|
E:ASP94
|
3.0
|
12.5
|
1.0
|
H
|
E:GLY92
|
3.0
|
18.0
|
1.0
|
CA
|
E:GLY91
|
3.1
|
14.0
|
1.0
|
N
|
E:GLY92
|
3.3
|
15.0
|
1.0
|
O
|
E:ASP94
|
3.3
|
13.9
|
1.0
|
C
|
E:GLY91
|
3.3
|
12.5
|
1.0
|
HZ2
|
E:LYS96
|
3.3
|
17.2
|
1.0
|
N
|
E:GLN93
|
3.4
|
10.8
|
1.0
|
H
|
E:GLY91
|
3.4
|
17.2
|
1.0
|
F2
|
E:ALF303
|
3.6
|
8.3
|
1.0
|
HE3
|
E:LYS96
|
3.6
|
14.0
|
1.0
|
CA
|
E:ASP94
|
3.7
|
12.5
|
1.0
|
CB
|
E:ASP94
|
3.7
|
13.8
|
1.0
|
N
|
E:GLY91
|
3.7
|
14.3
|
1.0
|
HA2
|
E:GLY91
|
3.8
|
16.9
|
1.0
|
CE
|
E:LYS96
|
3.9
|
11.7
|
1.0
|
OD2
|
E:ASP94
|
3.9
|
15.0
|
1.0
|
C
|
E:ASP94
|
3.9
|
11.4
|
1.0
|
HG
|
E:SER9
|
4.0
|
16.1
|
1.0
|
HB3
|
E:GLN93
|
4.0
|
18.5
|
1.0
|
C
|
E:GLN93
|
4.0
|
15.1
|
1.0
|
PB
|
E:ADP301
|
4.0
|
12.1
|
1.0
|
O
|
E:HOH434
|
4.1
|
12.9
|
1.0
|
CA
|
E:GLN93
|
4.1
|
14.8
|
1.0
|
O
|
E:GLY91
|
4.2
|
13.4
|
1.0
|
MG
|
E:MG302
|
4.2
|
12.5
|
1.0
|
HE2
|
E:LYS96
|
4.3
|
14.0
|
1.0
|
CG
|
E:ASP94
|
4.3
|
12.5
|
1.0
|
CA
|
E:GLY92
|
4.3
|
13.1
|
1.0
|
C
|
E:GLY92
|
4.3
|
14.9
|
1.0
|
HE2
|
E:TYR56
|
4.4
|
11.3
|
1.0
|
OE1
|
E:GLU69
|
4.5
|
14.5
|
1.0
|
O1B
|
E:ADP301
|
4.5
|
12.2
|
1.0
|
HB3
|
E:ASP94
|
4.5
|
16.6
|
1.0
|
O3A
|
E:ADP301
|
4.5
|
14.2
|
1.0
|
CB
|
E:GLN93
|
4.6
|
15.4
|
1.0
|
HA
|
E:ASP94
|
4.6
|
15.0
|
1.0
|
HA3
|
E:GLY92
|
4.7
|
15.7
|
1.0
|
O
|
E:HOH469
|
4.7
|
13.9
|
1.0
|
OG
|
E:SER9
|
4.8
|
13.4
|
1.0
|
C
|
E:LEU90
|
5.0
|
15.5
|
1.0
|
|
Fluorine binding site 2 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 2 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F303
b:8.3
occ:1.00
|
F2
|
E:ALF303
|
0.0
|
8.3
|
1.0
|
AL
|
E:ALF303
|
1.8
|
14.6
|
1.0
|
H
|
E:SER9
|
2.1
|
15.2
|
1.0
|
O
|
E:HOH493
|
2.3
|
10.9
|
1.0
|
F3
|
E:ALF303
|
2.5
|
12.6
|
1.0
|
F4
|
E:ALF303
|
2.6
|
15.2
|
1.0
|
O3B
|
E:ADP301
|
2.7
|
14.1
|
1.0
|
O
|
E:HOH417
|
2.7
|
13.9
|
1.0
|
HA2
|
E:GLY8
|
2.8
|
22.3
|
1.0
|
HD2
|
E:TYR56
|
2.9
|
16.3
|
1.0
|
N
|
E:SER9
|
2.9
|
12.7
|
1.0
|
HA3
|
E:GLY8
|
3.0
|
22.3
|
1.0
|
HG
|
E:SER9
|
3.2
|
16.1
|
1.0
|
CA
|
E:GLY8
|
3.3
|
18.5
|
1.0
|
HE2
|
E:TYR56
|
3.3
|
11.3
|
1.0
|
PB
|
E:ADP301
|
3.3
|
12.1
|
1.0
|
HB3
|
E:SER9
|
3.3
|
18.3
|
1.0
|
O
|
E:HOH496
|
3.4
|
10.8
|
1.0
|
O1B
|
E:ADP301
|
3.5
|
12.2
|
1.0
|
CD2
|
E:TYR56
|
3.6
|
13.6
|
1.0
|
C
|
E:GLY8
|
3.6
|
17.2
|
1.0
|
F1
|
E:ALF303
|
3.6
|
14.4
|
1.0
|
O2B
|
E:ADP301
|
3.6
|
10.8
|
1.0
|
MG
|
E:MG302
|
3.8
|
12.5
|
1.0
|
CE2
|
E:TYR56
|
3.8
|
9.4
|
1.0
|
OG
|
E:SER9
|
3.8
|
13.4
|
1.0
|
CB
|
E:SER9
|
3.9
|
15.2
|
1.0
|
CA
|
E:SER9
|
3.9
|
15.9
|
1.0
|
H
|
E:TYR56
|
4.2
|
15.6
|
1.0
|
OE1
|
E:GLU69
|
4.2
|
14.5
|
1.0
|
H
|
E:THR10
|
4.2
|
16.6
|
1.0
|
HA
|
E:SER9
|
4.6
|
19.1
|
1.0
|
N
|
E:GLY8
|
4.6
|
10.1
|
1.0
|
OE2
|
E:GLU69
|
4.6
|
14.2
|
1.0
|
H
|
E:GLY92
|
4.7
|
18.0
|
1.0
|
HB2
|
E:TYR56
|
4.7
|
16.4
|
1.0
|
HB3
|
E:GLN93
|
4.7
|
18.5
|
1.0
|
HZ3
|
E:LYS96
|
4.7
|
17.2
|
1.0
|
H
|
E:GLN93
|
4.7
|
13.0
|
1.0
|
OD2
|
E:ASP94
|
4.8
|
15.0
|
1.0
|
HB2
|
E:SER9
|
4.8
|
18.3
|
1.0
|
CD
|
E:GLU69
|
4.8
|
13.0
|
1.0
|
CG
|
E:TYR56
|
4.8
|
12.1
|
1.0
|
N
|
E:THR10
|
4.8
|
13.8
|
1.0
|
O
|
E:GLY8
|
4.8
|
18.2
|
1.0
|
HZ1
|
E:LYS96
|
4.8
|
17.2
|
1.0
|
O3A
|
E:ADP301
|
4.8
|
14.2
|
1.0
|
HA2
|
E:GLY55
|
4.9
|
16.2
|
1.0
|
HA3
|
E:GLY91
|
4.9
|
16.9
|
1.0
|
HZ1
|
E:LYS13
|
4.9
|
15.2
|
1.0
|
C
|
E:SER9
|
4.9
|
16.2
|
1.0
|
O
|
E:HOH469
|
5.0
|
13.9
|
1.0
|
|
Fluorine binding site 3 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 3 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F303
b:12.6
occ:1.00
|
F3
|
E:ALF303
|
0.0
|
12.6
|
1.0
|
AL
|
E:ALF303
|
1.8
|
14.6
|
1.0
|
MG
|
E:MG302
|
2.0
|
12.5
|
1.0
|
HZ3
|
E:LYS96
|
2.3
|
17.2
|
1.0
|
F1
|
E:ALF303
|
2.5
|
14.4
|
1.0
|
F2
|
E:ALF303
|
2.5
|
8.3
|
1.0
|
O3B
|
E:ADP301
|
2.6
|
14.1
|
1.0
|
O
|
E:HOH417
|
2.7
|
13.9
|
1.0
|
HZ1
|
E:LYS96
|
2.8
|
17.2
|
1.0
|
O1B
|
E:ADP301
|
2.8
|
12.2
|
1.0
|
O
|
E:HOH469
|
2.9
|
13.9
|
1.0
|
NZ
|
E:LYS96
|
3.0
|
14.4
|
1.0
|
O
|
E:HOH496
|
3.0
|
10.8
|
1.0
|
O
|
E:HOH434
|
3.0
|
12.9
|
1.0
|
OE1
|
E:GLU69
|
3.1
|
14.5
|
1.0
|
PB
|
E:ADP301
|
3.2
|
12.1
|
1.0
|
HA3
|
E:GLY91
|
3.2
|
16.9
|
1.0
|
F4
|
E:ALF303
|
3.5
|
15.2
|
1.0
|
O
|
E:HOH493
|
3.5
|
10.9
|
1.0
|
HZ2
|
E:LYS96
|
3.5
|
17.2
|
1.0
|
HE2
|
E:LYS96
|
3.8
|
14.0
|
1.0
|
CE
|
E:LYS96
|
3.9
|
11.7
|
1.0
|
O
|
E:HOH424
|
4.1
|
12.1
|
1.0
|
HE3
|
E:LYS96
|
4.2
|
14.0
|
1.0
|
CA
|
E:GLY91
|
4.2
|
14.0
|
1.0
|
CD
|
E:GLU69
|
4.2
|
13.0
|
1.0
|
HB2
|
E:ASP94
|
4.2
|
16.6
|
1.0
|
H
|
E:GLY92
|
4.2
|
18.0
|
1.0
|
O3A
|
E:ADP301
|
4.3
|
14.2
|
1.0
|
O2B
|
E:ADP301
|
4.4
|
10.8
|
1.0
|
H
|
E:SER9
|
4.4
|
15.2
|
1.0
|
HA2
|
E:GLY91
|
4.5
|
16.9
|
1.0
|
HA3
|
E:GLY8
|
4.5
|
22.3
|
1.0
|
H
|
E:ASP94
|
4.6
|
15.0
|
1.0
|
HG
|
E:SER9
|
4.6
|
16.1
|
1.0
|
HZ1
|
E:LYS13
|
4.7
|
15.2
|
1.0
|
HA2
|
E:GLY8
|
4.7
|
22.3
|
1.0
|
OE2
|
E:GLU69
|
4.7
|
14.2
|
1.0
|
H
|
E:GLN93
|
4.7
|
13.0
|
1.0
|
N
|
E:GLY92
|
4.8
|
15.0
|
1.0
|
O1A
|
E:ADP301
|
4.8
|
10.2
|
1.0
|
HE2
|
E:TYR56
|
4.8
|
11.3
|
1.0
|
OD1
|
E:ASP89
|
4.9
|
11.1
|
1.0
|
H
|
E:GLY91
|
4.9
|
17.2
|
1.0
|
N
|
E:GLY91
|
4.9
|
14.3
|
1.0
|
OD2
|
E:ASP94
|
4.9
|
15.0
|
1.0
|
C
|
E:GLY91
|
5.0
|
12.5
|
1.0
|
|
Fluorine binding site 4 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 4 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F303
b:15.2
occ:1.00
|
F4
|
E:ALF303
|
0.0
|
15.2
|
1.0
|
AL
|
E:ALF303
|
1.8
|
14.6
|
1.0
|
HG
|
E:SER9
|
1.8
|
16.1
|
1.0
|
HB3
|
E:GLN93
|
2.3
|
18.5
|
1.0
|
H
|
E:GLN93
|
2.4
|
13.0
|
1.0
|
OG
|
E:SER9
|
2.5
|
13.4
|
1.0
|
F1
|
E:ALF303
|
2.5
|
14.4
|
1.0
|
HE2
|
E:TYR56
|
2.6
|
11.3
|
1.0
|
F2
|
E:ALF303
|
2.6
|
8.3
|
1.0
|
HB3
|
E:SER9
|
2.7
|
18.3
|
1.0
|
O3B
|
E:ADP301
|
2.7
|
14.1
|
1.0
|
O
|
E:HOH417
|
2.9
|
13.9
|
1.0
|
N
|
E:GLN93
|
3.1
|
10.8
|
1.0
|
CB
|
E:SER9
|
3.1
|
15.2
|
1.0
|
H
|
E:SER9
|
3.2
|
15.2
|
1.0
|
CB
|
E:GLN93
|
3.2
|
15.4
|
1.0
|
H
|
E:ASP94
|
3.3
|
15.0
|
1.0
|
CE2
|
E:TYR56
|
3.4
|
9.4
|
1.0
|
H
|
E:GLY92
|
3.5
|
18.0
|
1.0
|
F3
|
E:ALF303
|
3.5
|
12.6
|
1.0
|
OD2
|
E:ASP94
|
3.6
|
15.0
|
1.0
|
CA
|
E:GLN93
|
3.6
|
14.8
|
1.0
|
HD2
|
E:TYR56
|
3.7
|
16.3
|
1.0
|
HB2
|
E:GLN93
|
3.7
|
18.5
|
1.0
|
HB2
|
E:SER9
|
3.8
|
18.3
|
1.0
|
N
|
E:ASP94
|
3.8
|
12.5
|
1.0
|
N
|
E:SER9
|
3.9
|
12.7
|
1.0
|
N
|
E:GLY92
|
3.9
|
15.0
|
1.0
|
CD2
|
E:TYR56
|
4.0
|
13.6
|
1.0
|
HG2
|
E:GLN93
|
4.1
|
19.8
|
1.0
|
C
|
E:GLY92
|
4.1
|
14.9
|
1.0
|
PB
|
E:ADP301
|
4.1
|
12.1
|
1.0
|
CG
|
E:GLN93
|
4.1
|
16.5
|
1.0
|
CA
|
E:SER9
|
4.1
|
15.9
|
1.0
|
C
|
E:GLN93
|
4.1
|
15.1
|
1.0
|
HH
|
E:TYR56
|
4.2
|
18.5
|
1.0
|
HG3
|
E:GLN93
|
4.2
|
19.8
|
1.0
|
HA3
|
E:GLY92
|
4.3
|
15.7
|
1.0
|
HG1
|
E:THR10
|
4.3
|
30.6
|
1.0
|
HA3
|
E:GLY91
|
4.3
|
16.9
|
1.0
|
HB2
|
E:ASP94
|
4.3
|
16.6
|
1.0
|
CA
|
E:GLY92
|
4.3
|
13.1
|
1.0
|
HZ1
|
E:LYS96
|
4.5
|
17.2
|
1.0
|
HA
|
E:GLN93
|
4.5
|
17.7
|
1.0
|
CZ
|
E:TYR56
|
4.5
|
10.5
|
1.0
|
O2B
|
E:ADP301
|
4.5
|
10.8
|
1.0
|
H
|
E:THR10
|
4.5
|
16.6
|
1.0
|
CG
|
E:ASP94
|
4.6
|
12.5
|
1.0
|
O
|
E:HOH493
|
4.6
|
10.9
|
1.0
|
HD13
|
F:ILE161
|
4.6
|
25.0
|
1.0
|
OH
|
E:TYR56
|
4.7
|
15.4
|
1.0
|
C
|
E:GLY91
|
4.7
|
12.5
|
1.0
|
CB
|
E:ASP94
|
4.8
|
13.8
|
1.0
|
O
|
E:HOH548
|
4.8
|
24.9
|
1.0
|
HA
|
E:SER9
|
4.8
|
19.1
|
1.0
|
HG21
|
F:ILE161
|
4.9
|
17.6
|
1.0
|
CA
|
E:ASP94
|
4.9
|
12.5
|
1.0
|
O1B
|
E:ADP301
|
4.9
|
12.2
|
1.0
|
N
|
E:THR10
|
5.0
|
13.8
|
1.0
|
C
|
E:SER9
|
5.0
|
16.2
|
1.0
|
|
Fluorine binding site 5 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 5 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F304
b:25.7
occ:1.00
|
F1
|
F:ALF304
|
0.0
|
25.7
|
1.0
|
AL
|
F:ALF304
|
1.8
|
23.4
|
1.0
|
HZ1
|
F:LYS96
|
1.8
|
26.9
|
1.0
|
H
|
F:ASP94
|
2.2
|
24.0
|
1.0
|
HA3
|
F:GLY91
|
2.3
|
26.8
|
1.0
|
F3
|
F:ALF304
|
2.5
|
22.0
|
1.0
|
F4
|
F:ALF304
|
2.6
|
25.9
|
1.0
|
NZ
|
F:LYS96
|
2.7
|
22.4
|
1.0
|
O1B
|
F:ADP302
|
2.7
|
23.4
|
1.0
|
O
|
F:HOH421
|
2.8
|
21.2
|
1.0
|
H
|
F:GLN93
|
2.8
|
23.1
|
1.0
|
HZ3
|
F:LYS96
|
2.9
|
26.9
|
1.0
|
HB2
|
F:ASP94
|
3.0
|
25.3
|
1.0
|
N
|
F:ASP94
|
3.0
|
20.0
|
1.0
|
HZ2
|
F:LYS96
|
3.0
|
26.9
|
1.0
|
H
|
F:GLY92
|
3.1
|
29.0
|
1.0
|
CA
|
F:GLY91
|
3.1
|
22.3
|
1.0
|
O
|
F:ASP94
|
3.1
|
17.9
|
1.0
|
H
|
F:GLY91
|
3.2
|
26.8
|
1.0
|
N
|
F:GLY92
|
3.3
|
24.2
|
1.0
|
C
|
F:GLY91
|
3.4
|
24.3
|
1.0
|
N
|
F:GLN93
|
3.5
|
19.2
|
1.0
|
HE3
|
F:LYS96
|
3.6
|
30.9
|
1.0
|
F2
|
F:ALF304
|
3.6
|
20.5
|
1.0
|
N
|
F:GLY91
|
3.6
|
22.3
|
1.0
|
CA
|
F:ASP94
|
3.6
|
20.6
|
1.0
|
CB
|
F:ASP94
|
3.7
|
21.1
|
1.0
|
C
|
F:ASP94
|
3.7
|
21.7
|
1.0
|
CE
|
F:LYS96
|
3.7
|
25.8
|
1.0
|
HA2
|
F:GLY91
|
3.8
|
26.8
|
1.0
|
C
|
F:GLN93
|
4.1
|
24.2
|
1.0
|
OD2
|
F:ASP94
|
4.1
|
25.8
|
1.0
|
PB
|
F:ADP302
|
4.1
|
22.4
|
1.0
|
MG
|
F:MG303
|
4.1
|
21.3
|
1.0
|
O
|
F:HOH431
|
4.1
|
21.5
|
1.0
|
HB3
|
F:GLN93
|
4.2
|
28.4
|
1.0
|
HE2
|
F:LYS96
|
4.2
|
30.9
|
1.0
|
O
|
F:GLY91
|
4.2
|
22.0
|
1.0
|
CA
|
F:GLN93
|
4.3
|
23.8
|
1.0
|
HG
|
F:SER9
|
4.3
|
39.1
|
1.0
|
CA
|
F:GLY92
|
4.4
|
23.2
|
1.0
|
CG
|
F:ASP94
|
4.4
|
21.0
|
1.0
|
C
|
F:GLY92
|
4.4
|
24.2
|
1.0
|
O2B
|
F:ADP302
|
4.4
|
23.3
|
1.0
|
HB3
|
F:ASP94
|
4.4
|
25.3
|
1.0
|
OE1
|
F:GLU69
|
4.4
|
25.4
|
1.0
|
HE2
|
F:TYR56
|
4.5
|
34.6
|
1.0
|
HA
|
F:ASP94
|
4.5
|
24.7
|
1.0
|
O3A
|
F:ADP302
|
4.6
|
21.8
|
1.0
|
O
|
F:HOH444
|
4.6
|
23.6
|
1.0
|
HB3
|
F:SER9
|
4.7
|
32.6
|
1.0
|
HD2
|
F:LYS96
|
4.8
|
34.7
|
1.0
|
HA3
|
F:GLY92
|
4.8
|
27.9
|
1.0
|
CB
|
F:GLN93
|
4.8
|
23.7
|
1.0
|
OG
|
F:SER9
|
4.8
|
32.6
|
1.0
|
CD
|
F:LYS96
|
4.9
|
28.9
|
1.0
|
C
|
F:LEU90
|
4.9
|
20.7
|
1.0
|
|
Fluorine binding site 6 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 6 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F304
b:20.5
occ:1.00
|
F2
|
F:ALF304
|
0.0
|
20.5
|
1.0
|
AL
|
F:ALF304
|
1.8
|
23.4
|
1.0
|
H
|
F:SER9
|
1.9
|
30.4
|
1.0
|
F3
|
F:ALF304
|
2.5
|
22.0
|
1.0
|
F4
|
F:ALF304
|
2.6
|
25.9
|
1.0
|
O
|
F:HOH464
|
2.6
|
24.6
|
1.0
|
O1B
|
F:ADP302
|
2.7
|
23.4
|
1.0
|
N
|
F:SER9
|
2.7
|
25.3
|
1.0
|
HD2
|
F:TYR56
|
2.7
|
33.3
|
1.0
|
O
|
F:HOH421
|
2.8
|
21.2
|
1.0
|
HB3
|
F:SER9
|
2.8
|
32.6
|
1.0
|
HA2
|
F:GLY8
|
2.9
|
33.6
|
1.0
|
HA3
|
F:GLY8
|
3.1
|
33.6
|
1.0
|
HE2
|
F:TYR56
|
3.1
|
34.6
|
1.0
|
CA
|
F:GLY8
|
3.4
|
28.0
|
1.0
|
PB
|
F:ADP302
|
3.4
|
22.4
|
1.0
|
O
|
F:HOH473
|
3.4
|
21.7
|
1.0
|
CD2
|
F:TYR56
|
3.5
|
27.7
|
1.0
|
CB
|
F:SER9
|
3.5
|
27.2
|
1.0
|
C
|
F:GLY8
|
3.5
|
27.5
|
1.0
|
F1
|
F:ALF304
|
3.6
|
25.7
|
1.0
|
O3B
|
F:ADP302
|
3.6
|
23.4
|
1.0
|
O2B
|
F:ADP302
|
3.7
|
23.3
|
1.0
|
CA
|
F:SER9
|
3.7
|
26.1
|
1.0
|
CE2
|
F:TYR56
|
3.7
|
28.9
|
1.0
|
OG
|
F:SER9
|
3.8
|
32.6
|
1.0
|
HG
|
F:SER9
|
3.9
|
39.1
|
1.0
|
MG
|
F:MG303
|
4.0
|
21.3
|
1.0
|
H
|
F:THR10
|
4.1
|
29.9
|
1.0
|
HA
|
F:SER9
|
4.2
|
31.3
|
1.0
|
H
|
F:TYR56
|
4.3
|
34.2
|
1.0
|
HB2
|
F:SER9
|
4.3
|
32.6
|
1.0
|
OE1
|
F:GLU69
|
4.4
|
25.4
|
1.0
|
H
|
F:GLN93
|
4.5
|
23.1
|
1.0
|
HB3
|
F:GLN93
|
4.5
|
28.4
|
1.0
|
HZ1
|
F:LYS96
|
4.6
|
26.9
|
1.0
|
H
|
F:GLY92
|
4.6
|
29.0
|
1.0
|
HB2
|
F:TYR56
|
4.7
|
34.2
|
1.0
|
OE2
|
F:GLU69
|
4.7
|
19.1
|
1.0
|
N
|
F:THR10
|
4.7
|
24.9
|
1.0
|
OD2
|
F:ASP94
|
4.7
|
25.8
|
1.0
|
CG
|
F:TYR56
|
4.7
|
24.5
|
1.0
|
N
|
F:GLY8
|
4.7
|
30.1
|
1.0
|
O
|
F:GLY8
|
4.7
|
25.2
|
1.0
|
C
|
F:SER9
|
4.8
|
24.2
|
1.0
|
O3A
|
F:ADP302
|
4.8
|
21.8
|
1.0
|
H
|
F:ASP94
|
4.9
|
24.0
|
1.0
|
HA3
|
F:GLY91
|
4.9
|
26.8
|
1.0
|
HZ1
|
F:LYS13
|
4.9
|
31.6
|
1.0
|
CD
|
F:GLU69
|
4.9
|
28.8
|
1.0
|
HZ3
|
F:LYS96
|
4.9
|
26.9
|
1.0
|
|
Fluorine binding site 7 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 7 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F304
b:22.0
occ:1.00
|
F3
|
F:ALF304
|
0.0
|
22.0
|
1.0
|
AL
|
F:ALF304
|
1.8
|
23.4
|
1.0
|
H
|
F:GLN93
|
2.1
|
23.1
|
1.0
|
HB3
|
F:GLN93
|
2.3
|
28.4
|
1.0
|
HB3
|
F:SER9
|
2.3
|
32.6
|
1.0
|
HG
|
F:SER9
|
2.4
|
39.1
|
1.0
|
F1
|
F:ALF304
|
2.5
|
25.7
|
1.0
|
F2
|
F:ALF304
|
2.5
|
20.5
|
1.0
|
O1B
|
F:ADP302
|
2.7
|
23.4
|
1.0
|
H
|
F:ASP94
|
2.8
|
24.0
|
1.0
|
HE2
|
F:TYR56
|
2.8
|
34.6
|
1.0
|
O
|
F:HOH421
|
2.8
|
21.2
|
1.0
|
OG
|
F:SER9
|
2.9
|
32.6
|
1.0
|
N
|
F:GLN93
|
2.9
|
19.2
|
1.0
|
CB
|
F:SER9
|
3.0
|
27.2
|
1.0
|
CB
|
F:GLN93
|
3.1
|
23.7
|
1.0
|
H
|
F:SER9
|
3.3
|
30.4
|
1.0
|
H
|
F:GLY92
|
3.4
|
29.0
|
1.0
|
CA
|
F:GLN93
|
3.4
|
23.8
|
1.0
|
N
|
F:ASP94
|
3.5
|
20.0
|
1.0
|
HB2
|
F:SER9
|
3.5
|
32.6
|
1.0
|
OD2
|
F:ASP94
|
3.6
|
25.8
|
1.0
|
F4
|
F:ALF304
|
3.6
|
25.9
|
1.0
|
CE2
|
F:TYR56
|
3.7
|
28.9
|
1.0
|
HB2
|
F:GLN93
|
3.7
|
28.4
|
1.0
|
N
|
F:GLY92
|
3.8
|
24.2
|
1.0
|
C
|
F:GLN93
|
3.9
|
24.2
|
1.0
|
HD2
|
F:TYR56
|
4.0
|
33.3
|
1.0
|
C
|
F:GLY92
|
4.0
|
24.2
|
1.0
|
N
|
F:SER9
|
4.0
|
25.3
|
1.0
|
HB2
|
F:ASP94
|
4.0
|
25.3
|
1.0
|
CG
|
F:GLN93
|
4.1
|
28.2
|
1.0
|
HZ1
|
F:LYS96
|
4.1
|
26.9
|
1.0
|
HG2
|
F:GLN93
|
4.1
|
33.9
|
1.0
|
PB
|
F:ADP302
|
4.1
|
22.4
|
1.0
|
CA
|
F:SER9
|
4.1
|
26.1
|
1.0
|
HG3
|
F:GLN93
|
4.1
|
33.9
|
1.0
|
HA3
|
F:GLY91
|
4.2
|
26.8
|
1.0
|
HA3
|
F:GLY92
|
4.2
|
27.9
|
1.0
|
CA
|
F:GLY92
|
4.2
|
23.2
|
1.0
|
CD2
|
F:TYR56
|
4.3
|
27.7
|
1.0
|
HH
|
F:TYR56
|
4.3
|
29.5
|
1.0
|
HA
|
F:GLN93
|
4.3
|
28.6
|
1.0
|
CG
|
F:ASP94
|
4.4
|
21.0
|
1.0
|
CB
|
F:ASP94
|
4.5
|
21.1
|
1.0
|
CA
|
F:ASP94
|
4.6
|
20.6
|
1.0
|
C
|
F:GLY91
|
4.6
|
24.3
|
1.0
|
O3B
|
F:ADP302
|
4.6
|
23.4
|
1.0
|
H
|
F:THR10
|
4.6
|
29.9
|
1.0
|
HA
|
F:SER9
|
4.7
|
31.3
|
1.0
|
CZ
|
F:TYR56
|
4.7
|
28.4
|
1.0
|
O4
|
F:SO4305
|
4.7
|
27.5
|
0.5
|
O
|
F:HOH464
|
4.8
|
24.6
|
1.0
|
OH
|
F:TYR56
|
4.8
|
24.6
|
1.0
|
CA
|
F:GLY91
|
4.9
|
22.3
|
1.0
|
NZ
|
F:LYS96
|
4.9
|
22.4
|
1.0
|
O2B
|
F:ADP302
|
4.9
|
23.3
|
1.0
|
HD13
|
E:ILE161
|
5.0
|
37.5
|
1.0
|
O3A
|
F:ADP302
|
5.0
|
21.8
|
1.0
|
OG1
|
F:THR10
|
5.0
|
25.2
|
1.0
|
|
Fluorine binding site 8 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 8 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:F304
b:25.9
occ:1.00
|
F4
|
F:ALF304
|
0.0
|
25.9
|
1.0
|
AL
|
F:ALF304
|
1.8
|
23.4
|
1.0
|
MG
|
F:MG303
|
1.9
|
21.3
|
1.0
|
HZ3
|
F:LYS96
|
2.4
|
26.9
|
1.0
|
F1
|
F:ALF304
|
2.6
|
25.7
|
1.0
|
HZ1
|
F:LYS96
|
2.6
|
26.9
|
1.0
|
F2
|
F:ALF304
|
2.6
|
20.5
|
1.0
|
O
|
F:HOH473
|
2.7
|
21.7
|
1.0
|
O1B
|
F:ADP302
|
2.7
|
23.4
|
1.0
|
O
|
F:HOH444
|
2.7
|
23.6
|
1.0
|
O
|
F:HOH421
|
2.7
|
21.2
|
1.0
|
O2B
|
F:ADP302
|
2.8
|
23.3
|
1.0
|
NZ
|
F:LYS96
|
2.9
|
22.4
|
1.0
|
OE1
|
F:GLU69
|
3.1
|
25.4
|
1.0
|
O
|
F:HOH431
|
3.1
|
21.5
|
1.0
|
PB
|
F:ADP302
|
3.3
|
22.4
|
1.0
|
HA3
|
F:GLY91
|
3.4
|
26.8
|
1.0
|
F3
|
F:ALF304
|
3.6
|
22.0
|
1.0
|
HZ2
|
F:LYS96
|
3.6
|
26.9
|
1.0
|
HE2
|
F:LYS96
|
3.6
|
30.9
|
1.0
|
CE
|
F:LYS96
|
3.8
|
25.8
|
1.0
|
O
|
F:HOH464
|
3.8
|
24.6
|
1.0
|
HE3
|
F:LYS96
|
4.0
|
30.9
|
1.0
|
O
|
F:HOH432
|
4.0
|
24.0
|
1.0
|
CD
|
F:GLU69
|
4.1
|
28.8
|
1.0
|
HB2
|
F:ASP94
|
4.3
|
25.3
|
1.0
|
CA
|
F:GLY91
|
4.3
|
22.3
|
1.0
|
H
|
F:SER9
|
4.4
|
30.4
|
1.0
|
H
|
F:GLY92
|
4.4
|
29.0
|
1.0
|
O3A
|
F:ADP302
|
4.4
|
21.8
|
1.0
|
O3B
|
F:ADP302
|
4.4
|
23.4
|
1.0
|
HZ1
|
F:LYS13
|
4.5
|
31.6
|
1.0
|
HA3
|
F:GLY8
|
4.5
|
33.6
|
1.0
|
OE2
|
F:GLU69
|
4.5
|
19.1
|
1.0
|
H
|
F:ASP94
|
4.6
|
24.0
|
1.0
|
HA2
|
F:GLY91
|
4.6
|
26.8
|
1.0
|
HA2
|
F:GLY8
|
4.7
|
33.6
|
1.0
|
H
|
F:GLY91
|
4.8
|
26.8
|
1.0
|
HZ3
|
F:LYS13
|
4.8
|
31.6
|
1.0
|
HE2
|
F:TYR56
|
4.8
|
34.6
|
1.0
|
O1A
|
F:ADP302
|
4.9
|
17.8
|
1.0
|
OD1
|
F:ASP89
|
4.9
|
21.6
|
1.0
|
H
|
F:GLN93
|
4.9
|
23.1
|
1.0
|
N
|
F:GLY91
|
4.9
|
22.3
|
1.0
|
N
|
F:GLY92
|
5.0
|
24.2
|
1.0
|
OD2
|
F:ASP89
|
5.0
|
24.8
|
1.0
|
|
Fluorine binding site 9 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 9 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F303
b:15.4
occ:1.00
|
F1
|
G:ALF303
|
0.0
|
15.4
|
1.0
|
HG
|
G:SER9
|
1.7
|
17.3
|
1.0
|
AL
|
G:ALF303
|
1.8
|
16.5
|
1.0
|
H
|
G:GLN93
|
2.2
|
15.0
|
1.0
|
HB3
|
G:GLN93
|
2.4
|
15.5
|
1.0
|
OG
|
G:SER9
|
2.5
|
14.4
|
1.0
|
F3
|
G:ALF303
|
2.5
|
14.7
|
1.0
|
O1B
|
G:ADP301
|
2.5
|
13.5
|
1.0
|
F4
|
G:ALF303
|
2.6
|
11.1
|
1.0
|
HE2
|
G:TYR56
|
2.7
|
14.7
|
1.0
|
O
|
G:HOH430
|
2.9
|
12.8
|
1.0
|
N
|
G:GLN93
|
3.0
|
12.5
|
1.0
|
HB3
|
G:SER9
|
3.0
|
18.9
|
1.0
|
H
|
G:SER9
|
3.2
|
17.6
|
1.0
|
CB
|
G:GLN93
|
3.3
|
12.9
|
1.0
|
CB
|
G:SER9
|
3.3
|
15.7
|
1.0
|
H
|
G:GLY92
|
3.3
|
17.9
|
1.0
|
H
|
G:ASP94
|
3.3
|
13.1
|
1.0
|
F2
|
G:ALF303
|
3.6
|
13.0
|
1.0
|
CE2
|
G:TYR56
|
3.6
|
12.3
|
1.0
|
CA
|
G:GLN93
|
3.6
|
12.5
|
1.0
|
OD2
|
G:ASP94
|
3.7
|
14.2
|
1.0
|
HB2
|
G:GLN93
|
3.8
|
15.5
|
1.0
|
N
|
G:GLY92
|
3.8
|
14.9
|
1.0
|
HD2
|
G:TYR56
|
3.8
|
13.0
|
1.0
|
N
|
G:ASP94
|
3.9
|
10.9
|
1.0
|
PB
|
G:ADP301
|
3.9
|
11.8
|
1.0
|
N
|
G:SER9
|
4.0
|
14.6
|
1.0
|
HB2
|
G:SER9
|
4.0
|
18.9
|
1.0
|
C
|
G:GLY92
|
4.0
|
14.7
|
1.0
|
HA3
|
G:GLY92
|
4.1
|
16.7
|
1.0
|
CD2
|
G:TYR56
|
4.1
|
10.8
|
1.0
|
HA3
|
G:GLY91
|
4.2
|
15.1
|
1.0
|
C
|
G:GLN93
|
4.2
|
14.4
|
1.0
|
CA
|
G:GLY92
|
4.2
|
13.9
|
1.0
|
HH
|
G:TYR56
|
4.2
|
14.8
|
1.0
|
CA
|
G:SER9
|
4.2
|
13.8
|
1.0
|
HB2
|
G:ASP94
|
4.2
|
15.2
|
1.0
|
CG
|
G:GLN93
|
4.2
|
18.8
|
1.0
|
HG2
|
G:GLN93
|
4.2
|
22.6
|
1.0
|
HG3
|
G:GLN93
|
4.3
|
22.6
|
1.0
|
O3B
|
G:ADP301
|
4.4
|
13.6
|
1.0
|
HZ1
|
G:LYS96
|
4.4
|
13.4
|
1.0
|
O
|
G:HOH535
|
4.5
|
11.8
|
1.0
|
HA
|
G:GLN93
|
4.5
|
15.0
|
1.0
|
H
|
G:THR10
|
4.6
|
21.2
|
1.0
|
C
|
G:GLY91
|
4.6
|
11.3
|
1.0
|
HD13
|
H:ILE161
|
4.7
|
24.7
|
1.0
|
CG
|
G:ASP94
|
4.7
|
14.3
|
1.0
|
CZ
|
G:TYR56
|
4.7
|
10.9
|
1.0
|
O2B
|
G:ADP301
|
4.8
|
10.9
|
1.0
|
CB
|
G:ASP94
|
4.8
|
12.7
|
1.0
|
O
|
G:HOH544
|
4.8
|
25.5
|
1.0
|
O3A
|
G:ADP301
|
4.8
|
12.7
|
1.0
|
OH
|
G:TYR56
|
4.8
|
12.3
|
1.0
|
CA
|
G:GLY91
|
4.9
|
12.5
|
1.0
|
CA
|
G:ASP94
|
4.9
|
10.4
|
1.0
|
OG1
|
G:THR10
|
4.9
|
23.6
|
1.0
|
N
|
G:THR10
|
5.0
|
17.7
|
1.0
|
HA
|
G:SER9
|
5.0
|
16.6
|
1.0
|
|
Fluorine binding site 10 out
of 16 in 7yzq
Go back to
Fluorine Binding Sites List in 7yzq
Fluorine binding site 10 out
of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:F303
b:13.0
occ:1.00
|
F2
|
G:ALF303
|
0.0
|
13.0
|
1.0
|
AL
|
G:ALF303
|
1.8
|
16.5
|
1.0
|
MG
|
G:MG302
|
1.9
|
10.7
|
1.0
|
HZ3
|
G:LYS96
|
2.3
|
13.4
|
1.0
|
F3
|
G:ALF303
|
2.5
|
14.7
|
1.0
|
F4
|
G:ALF303
|
2.5
|
11.1
|
1.0
|
O
|
G:HOH430
|
2.6
|
12.8
|
1.0
|
O
|
G:HOH471
|
2.7
|
13.1
|
1.0
|
HZ1
|
G:LYS96
|
2.8
|
13.4
|
1.0
|
O1B
|
G:ADP301
|
2.8
|
13.5
|
1.0
|
O2B
|
G:ADP301
|
2.8
|
10.9
|
1.0
|
O
|
G:HOH492
|
2.8
|
11.9
|
1.0
|
O
|
G:HOH499
|
2.9
|
9.3
|
1.0
|
NZ
|
G:LYS96
|
2.9
|
11.2
|
1.0
|
OE1
|
G:GLU69
|
2.9
|
12.9
|
1.0
|
PB
|
G:ADP301
|
3.3
|
11.8
|
1.0
|
HA3
|
G:GLY91
|
3.3
|
15.1
|
1.0
|
O
|
G:HOH535
|
3.5
|
11.8
|
1.0
|
F1
|
G:ALF303
|
3.6
|
15.4
|
1.0
|
HZ2
|
G:LYS96
|
3.6
|
13.4
|
1.0
|
HE2
|
G:LYS96
|
3.6
|
15.7
|
1.0
|
CE
|
G:LYS96
|
3.8
|
13.1
|
1.0
|
O
|
G:HOH462
|
4.0
|
13.3
|
1.0
|
CD
|
G:GLU69
|
4.0
|
15.0
|
1.0
|
HE3
|
G:LYS96
|
4.1
|
15.7
|
1.0
|
HB2
|
G:ASP94
|
4.2
|
15.2
|
1.0
|
CA
|
G:GLY91
|
4.3
|
12.5
|
1.0
|
H
|
G:GLY92
|
4.3
|
17.9
|
1.0
|
O3A
|
G:ADP301
|
4.4
|
12.7
|
1.0
|
O3B
|
G:ADP301
|
4.5
|
13.6
|
1.0
|
H
|
G:SER9
|
4.5
|
17.6
|
1.0
|
HA3
|
G:GLY8
|
4.6
|
20.9
|
1.0
|
HA2
|
G:GLY91
|
4.6
|
15.1
|
1.0
|
OE2
|
G:GLU69
|
4.6
|
14.5
|
1.0
|
H
|
G:ASP94
|
4.7
|
13.1
|
1.0
|
HZ1
|
G:LYS13
|
4.7
|
15.2
|
1.0
|
HG
|
G:SER9
|
4.7
|
17.3
|
1.0
|
OD1
|
G:ASP89
|
4.8
|
11.5
|
1.0
|
HA2
|
G:GLY8
|
4.8
|
20.9
|
1.0
|
H
|
G:GLN93
|
4.9
|
15.0
|
1.0
|
HE2
|
G:TYR56
|
4.9
|
14.7
|
1.0
|
H
|
G:GLY91
|
4.9
|
16.6
|
1.0
|
OD2
|
G:ASP89
|
4.9
|
10.1
|
1.0
|
N
|
G:GLY91
|
4.9
|
13.8
|
1.0
|
N
|
G:GLY92
|
5.0
|
14.9
|
1.0
|
O2A
|
G:ADP301
|
5.0
|
10.2
|
1.0
|
|
Reference:
J.H.Jeoung,
S.Nicklisch,
H.Dobbek.
Structural Basis For Coupled Atp-Driven Electron Transfer in the Double-Cubane Cluster Protein. Proc.Natl.Acad.Sci.Usa V. 119 76119 2022.
ISSN: ESSN 1091-6490
PubMed: 35905315
DOI: 10.1073/PNAS.2203576119
Page generated: Fri Aug 2 16:02:48 2024
|