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Fluorine in PDB 7yzq: Mgadp-ALF4-Bound Dccp:Dccp-R Complex

Protein crystallography data

The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex, PDB code: 7yzq was solved by J.-H.Jeoung, H.Dobbek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.16 / 1.96
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 78.032, 81.587, 121.485, 100.83, 96.92, 90.17
R / Rfree (%) 17.8 / 22.3

Other elements in 7yzq:

The structure of Mgadp-ALF4-Bound Dccp:Dccp-R Complex also contains other interesting chemical elements:

Iron (Fe) 40 atoms
Magnesium (Mg) 4 atoms
Aluminium (Al) 4 atoms

Fluorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Fluorine atom in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex (pdb code 7yzq). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 16 binding sites of Fluorine where determined in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex, PDB code: 7yzq:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Fluorine binding site 1 out of 16 in 7yzq

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Fluorine binding site 1 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:14.4
occ:1.00
F1 E:ALF303 0.0 14.4 1.0
AL E:ALF303 1.8 14.6 1.0
HZ1 E:LYS96 2.1 17.2 1.0
H E:ASP94 2.2 15.0 1.0
HA3 E:GLY91 2.2 16.9 1.0
F3 E:ALF303 2.5 12.6 1.0
F4 E:ALF303 2.5 15.2 1.0
H E:GLN93 2.6 13.0 1.0
O3B E:ADP301 2.7 14.1 1.0
O E:HOH417 2.8 13.9 1.0
NZ E:LYS96 2.9 14.4 1.0
HB2 E:ASP94 3.0 16.6 1.0
HZ3 E:LYS96 3.0 17.2 1.0
N E:ASP94 3.0 12.5 1.0
H E:GLY92 3.0 18.0 1.0
CA E:GLY91 3.1 14.0 1.0
N E:GLY92 3.3 15.0 1.0
O E:ASP94 3.3 13.9 1.0
C E:GLY91 3.3 12.5 1.0
HZ2 E:LYS96 3.3 17.2 1.0
N E:GLN93 3.4 10.8 1.0
H E:GLY91 3.4 17.2 1.0
F2 E:ALF303 3.6 8.3 1.0
HE3 E:LYS96 3.6 14.0 1.0
CA E:ASP94 3.7 12.5 1.0
CB E:ASP94 3.7 13.8 1.0
N E:GLY91 3.7 14.3 1.0
HA2 E:GLY91 3.8 16.9 1.0
CE E:LYS96 3.9 11.7 1.0
OD2 E:ASP94 3.9 15.0 1.0
C E:ASP94 3.9 11.4 1.0
HG E:SER9 4.0 16.1 1.0
HB3 E:GLN93 4.0 18.5 1.0
C E:GLN93 4.0 15.1 1.0
PB E:ADP301 4.0 12.1 1.0
O E:HOH434 4.1 12.9 1.0
CA E:GLN93 4.1 14.8 1.0
O E:GLY91 4.2 13.4 1.0
MG E:MG302 4.2 12.5 1.0
HE2 E:LYS96 4.3 14.0 1.0
CG E:ASP94 4.3 12.5 1.0
CA E:GLY92 4.3 13.1 1.0
C E:GLY92 4.3 14.9 1.0
HE2 E:TYR56 4.4 11.3 1.0
OE1 E:GLU69 4.5 14.5 1.0
O1B E:ADP301 4.5 12.2 1.0
HB3 E:ASP94 4.5 16.6 1.0
O3A E:ADP301 4.5 14.2 1.0
CB E:GLN93 4.6 15.4 1.0
HA E:ASP94 4.6 15.0 1.0
HA3 E:GLY92 4.7 15.7 1.0
O E:HOH469 4.7 13.9 1.0
OG E:SER9 4.8 13.4 1.0
C E:LEU90 5.0 15.5 1.0

Fluorine binding site 2 out of 16 in 7yzq

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Fluorine binding site 2 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:8.3
occ:1.00
F2 E:ALF303 0.0 8.3 1.0
AL E:ALF303 1.8 14.6 1.0
H E:SER9 2.1 15.2 1.0
O E:HOH493 2.3 10.9 1.0
F3 E:ALF303 2.5 12.6 1.0
F4 E:ALF303 2.6 15.2 1.0
O3B E:ADP301 2.7 14.1 1.0
O E:HOH417 2.7 13.9 1.0
HA2 E:GLY8 2.8 22.3 1.0
HD2 E:TYR56 2.9 16.3 1.0
N E:SER9 2.9 12.7 1.0
HA3 E:GLY8 3.0 22.3 1.0
HG E:SER9 3.2 16.1 1.0
CA E:GLY8 3.3 18.5 1.0
HE2 E:TYR56 3.3 11.3 1.0
PB E:ADP301 3.3 12.1 1.0
HB3 E:SER9 3.3 18.3 1.0
O E:HOH496 3.4 10.8 1.0
O1B E:ADP301 3.5 12.2 1.0
CD2 E:TYR56 3.6 13.6 1.0
C E:GLY8 3.6 17.2 1.0
F1 E:ALF303 3.6 14.4 1.0
O2B E:ADP301 3.6 10.8 1.0
MG E:MG302 3.8 12.5 1.0
CE2 E:TYR56 3.8 9.4 1.0
OG E:SER9 3.8 13.4 1.0
CB E:SER9 3.9 15.2 1.0
CA E:SER9 3.9 15.9 1.0
H E:TYR56 4.2 15.6 1.0
OE1 E:GLU69 4.2 14.5 1.0
H E:THR10 4.2 16.6 1.0
HA E:SER9 4.6 19.1 1.0
N E:GLY8 4.6 10.1 1.0
OE2 E:GLU69 4.6 14.2 1.0
H E:GLY92 4.7 18.0 1.0
HB2 E:TYR56 4.7 16.4 1.0
HB3 E:GLN93 4.7 18.5 1.0
HZ3 E:LYS96 4.7 17.2 1.0
H E:GLN93 4.7 13.0 1.0
OD2 E:ASP94 4.8 15.0 1.0
HB2 E:SER9 4.8 18.3 1.0
CD E:GLU69 4.8 13.0 1.0
CG E:TYR56 4.8 12.1 1.0
N E:THR10 4.8 13.8 1.0
O E:GLY8 4.8 18.2 1.0
HZ1 E:LYS96 4.8 17.2 1.0
O3A E:ADP301 4.8 14.2 1.0
HA2 E:GLY55 4.9 16.2 1.0
HA3 E:GLY91 4.9 16.9 1.0
HZ1 E:LYS13 4.9 15.2 1.0
C E:SER9 4.9 16.2 1.0
O E:HOH469 5.0 13.9 1.0

Fluorine binding site 3 out of 16 in 7yzq

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Fluorine binding site 3 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:12.6
occ:1.00
F3 E:ALF303 0.0 12.6 1.0
AL E:ALF303 1.8 14.6 1.0
MG E:MG302 2.0 12.5 1.0
HZ3 E:LYS96 2.3 17.2 1.0
F1 E:ALF303 2.5 14.4 1.0
F2 E:ALF303 2.5 8.3 1.0
O3B E:ADP301 2.6 14.1 1.0
O E:HOH417 2.7 13.9 1.0
HZ1 E:LYS96 2.8 17.2 1.0
O1B E:ADP301 2.8 12.2 1.0
O E:HOH469 2.9 13.9 1.0
NZ E:LYS96 3.0 14.4 1.0
O E:HOH496 3.0 10.8 1.0
O E:HOH434 3.0 12.9 1.0
OE1 E:GLU69 3.1 14.5 1.0
PB E:ADP301 3.2 12.1 1.0
HA3 E:GLY91 3.2 16.9 1.0
F4 E:ALF303 3.5 15.2 1.0
O E:HOH493 3.5 10.9 1.0
HZ2 E:LYS96 3.5 17.2 1.0
HE2 E:LYS96 3.8 14.0 1.0
CE E:LYS96 3.9 11.7 1.0
O E:HOH424 4.1 12.1 1.0
HE3 E:LYS96 4.2 14.0 1.0
CA E:GLY91 4.2 14.0 1.0
CD E:GLU69 4.2 13.0 1.0
HB2 E:ASP94 4.2 16.6 1.0
H E:GLY92 4.2 18.0 1.0
O3A E:ADP301 4.3 14.2 1.0
O2B E:ADP301 4.4 10.8 1.0
H E:SER9 4.4 15.2 1.0
HA2 E:GLY91 4.5 16.9 1.0
HA3 E:GLY8 4.5 22.3 1.0
H E:ASP94 4.6 15.0 1.0
HG E:SER9 4.6 16.1 1.0
HZ1 E:LYS13 4.7 15.2 1.0
HA2 E:GLY8 4.7 22.3 1.0
OE2 E:GLU69 4.7 14.2 1.0
H E:GLN93 4.7 13.0 1.0
N E:GLY92 4.8 15.0 1.0
O1A E:ADP301 4.8 10.2 1.0
HE2 E:TYR56 4.8 11.3 1.0
OD1 E:ASP89 4.9 11.1 1.0
H E:GLY91 4.9 17.2 1.0
N E:GLY91 4.9 14.3 1.0
OD2 E:ASP94 4.9 15.0 1.0
C E:GLY91 5.0 12.5 1.0

Fluorine binding site 4 out of 16 in 7yzq

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Fluorine binding site 4 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F303

b:15.2
occ:1.00
F4 E:ALF303 0.0 15.2 1.0
AL E:ALF303 1.8 14.6 1.0
HG E:SER9 1.8 16.1 1.0
HB3 E:GLN93 2.3 18.5 1.0
H E:GLN93 2.4 13.0 1.0
OG E:SER9 2.5 13.4 1.0
F1 E:ALF303 2.5 14.4 1.0
HE2 E:TYR56 2.6 11.3 1.0
F2 E:ALF303 2.6 8.3 1.0
HB3 E:SER9 2.7 18.3 1.0
O3B E:ADP301 2.7 14.1 1.0
O E:HOH417 2.9 13.9 1.0
N E:GLN93 3.1 10.8 1.0
CB E:SER9 3.1 15.2 1.0
H E:SER9 3.2 15.2 1.0
CB E:GLN93 3.2 15.4 1.0
H E:ASP94 3.3 15.0 1.0
CE2 E:TYR56 3.4 9.4 1.0
H E:GLY92 3.5 18.0 1.0
F3 E:ALF303 3.5 12.6 1.0
OD2 E:ASP94 3.6 15.0 1.0
CA E:GLN93 3.6 14.8 1.0
HD2 E:TYR56 3.7 16.3 1.0
HB2 E:GLN93 3.7 18.5 1.0
HB2 E:SER9 3.8 18.3 1.0
N E:ASP94 3.8 12.5 1.0
N E:SER9 3.9 12.7 1.0
N E:GLY92 3.9 15.0 1.0
CD2 E:TYR56 4.0 13.6 1.0
HG2 E:GLN93 4.1 19.8 1.0
C E:GLY92 4.1 14.9 1.0
PB E:ADP301 4.1 12.1 1.0
CG E:GLN93 4.1 16.5 1.0
CA E:SER9 4.1 15.9 1.0
C E:GLN93 4.1 15.1 1.0
HH E:TYR56 4.2 18.5 1.0
HG3 E:GLN93 4.2 19.8 1.0
HA3 E:GLY92 4.3 15.7 1.0
HG1 E:THR10 4.3 30.6 1.0
HA3 E:GLY91 4.3 16.9 1.0
HB2 E:ASP94 4.3 16.6 1.0
CA E:GLY92 4.3 13.1 1.0
HZ1 E:LYS96 4.5 17.2 1.0
HA E:GLN93 4.5 17.7 1.0
CZ E:TYR56 4.5 10.5 1.0
O2B E:ADP301 4.5 10.8 1.0
H E:THR10 4.5 16.6 1.0
CG E:ASP94 4.6 12.5 1.0
O E:HOH493 4.6 10.9 1.0
HD13 F:ILE161 4.6 25.0 1.0
OH E:TYR56 4.7 15.4 1.0
C E:GLY91 4.7 12.5 1.0
CB E:ASP94 4.8 13.8 1.0
O E:HOH548 4.8 24.9 1.0
HA E:SER9 4.8 19.1 1.0
HG21 F:ILE161 4.9 17.6 1.0
CA E:ASP94 4.9 12.5 1.0
O1B E:ADP301 4.9 12.2 1.0
N E:THR10 5.0 13.8 1.0
C E:SER9 5.0 16.2 1.0

Fluorine binding site 5 out of 16 in 7yzq

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Fluorine binding site 5 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F304

b:25.7
occ:1.00
F1 F:ALF304 0.0 25.7 1.0
AL F:ALF304 1.8 23.4 1.0
HZ1 F:LYS96 1.8 26.9 1.0
H F:ASP94 2.2 24.0 1.0
HA3 F:GLY91 2.3 26.8 1.0
F3 F:ALF304 2.5 22.0 1.0
F4 F:ALF304 2.6 25.9 1.0
NZ F:LYS96 2.7 22.4 1.0
O1B F:ADP302 2.7 23.4 1.0
O F:HOH421 2.8 21.2 1.0
H F:GLN93 2.8 23.1 1.0
HZ3 F:LYS96 2.9 26.9 1.0
HB2 F:ASP94 3.0 25.3 1.0
N F:ASP94 3.0 20.0 1.0
HZ2 F:LYS96 3.0 26.9 1.0
H F:GLY92 3.1 29.0 1.0
CA F:GLY91 3.1 22.3 1.0
O F:ASP94 3.1 17.9 1.0
H F:GLY91 3.2 26.8 1.0
N F:GLY92 3.3 24.2 1.0
C F:GLY91 3.4 24.3 1.0
N F:GLN93 3.5 19.2 1.0
HE3 F:LYS96 3.6 30.9 1.0
F2 F:ALF304 3.6 20.5 1.0
N F:GLY91 3.6 22.3 1.0
CA F:ASP94 3.6 20.6 1.0
CB F:ASP94 3.7 21.1 1.0
C F:ASP94 3.7 21.7 1.0
CE F:LYS96 3.7 25.8 1.0
HA2 F:GLY91 3.8 26.8 1.0
C F:GLN93 4.1 24.2 1.0
OD2 F:ASP94 4.1 25.8 1.0
PB F:ADP302 4.1 22.4 1.0
MG F:MG303 4.1 21.3 1.0
O F:HOH431 4.1 21.5 1.0
HB3 F:GLN93 4.2 28.4 1.0
HE2 F:LYS96 4.2 30.9 1.0
O F:GLY91 4.2 22.0 1.0
CA F:GLN93 4.3 23.8 1.0
HG F:SER9 4.3 39.1 1.0
CA F:GLY92 4.4 23.2 1.0
CG F:ASP94 4.4 21.0 1.0
C F:GLY92 4.4 24.2 1.0
O2B F:ADP302 4.4 23.3 1.0
HB3 F:ASP94 4.4 25.3 1.0
OE1 F:GLU69 4.4 25.4 1.0
HE2 F:TYR56 4.5 34.6 1.0
HA F:ASP94 4.5 24.7 1.0
O3A F:ADP302 4.6 21.8 1.0
O F:HOH444 4.6 23.6 1.0
HB3 F:SER9 4.7 32.6 1.0
HD2 F:LYS96 4.8 34.7 1.0
HA3 F:GLY92 4.8 27.9 1.0
CB F:GLN93 4.8 23.7 1.0
OG F:SER9 4.8 32.6 1.0
CD F:LYS96 4.9 28.9 1.0
C F:LEU90 4.9 20.7 1.0

Fluorine binding site 6 out of 16 in 7yzq

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Fluorine binding site 6 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F304

b:20.5
occ:1.00
F2 F:ALF304 0.0 20.5 1.0
AL F:ALF304 1.8 23.4 1.0
H F:SER9 1.9 30.4 1.0
F3 F:ALF304 2.5 22.0 1.0
F4 F:ALF304 2.6 25.9 1.0
O F:HOH464 2.6 24.6 1.0
O1B F:ADP302 2.7 23.4 1.0
N F:SER9 2.7 25.3 1.0
HD2 F:TYR56 2.7 33.3 1.0
O F:HOH421 2.8 21.2 1.0
HB3 F:SER9 2.8 32.6 1.0
HA2 F:GLY8 2.9 33.6 1.0
HA3 F:GLY8 3.1 33.6 1.0
HE2 F:TYR56 3.1 34.6 1.0
CA F:GLY8 3.4 28.0 1.0
PB F:ADP302 3.4 22.4 1.0
O F:HOH473 3.4 21.7 1.0
CD2 F:TYR56 3.5 27.7 1.0
CB F:SER9 3.5 27.2 1.0
C F:GLY8 3.5 27.5 1.0
F1 F:ALF304 3.6 25.7 1.0
O3B F:ADP302 3.6 23.4 1.0
O2B F:ADP302 3.7 23.3 1.0
CA F:SER9 3.7 26.1 1.0
CE2 F:TYR56 3.7 28.9 1.0
OG F:SER9 3.8 32.6 1.0
HG F:SER9 3.9 39.1 1.0
MG F:MG303 4.0 21.3 1.0
H F:THR10 4.1 29.9 1.0
HA F:SER9 4.2 31.3 1.0
H F:TYR56 4.3 34.2 1.0
HB2 F:SER9 4.3 32.6 1.0
OE1 F:GLU69 4.4 25.4 1.0
H F:GLN93 4.5 23.1 1.0
HB3 F:GLN93 4.5 28.4 1.0
HZ1 F:LYS96 4.6 26.9 1.0
H F:GLY92 4.6 29.0 1.0
HB2 F:TYR56 4.7 34.2 1.0
OE2 F:GLU69 4.7 19.1 1.0
N F:THR10 4.7 24.9 1.0
OD2 F:ASP94 4.7 25.8 1.0
CG F:TYR56 4.7 24.5 1.0
N F:GLY8 4.7 30.1 1.0
O F:GLY8 4.7 25.2 1.0
C F:SER9 4.8 24.2 1.0
O3A F:ADP302 4.8 21.8 1.0
H F:ASP94 4.9 24.0 1.0
HA3 F:GLY91 4.9 26.8 1.0
HZ1 F:LYS13 4.9 31.6 1.0
CD F:GLU69 4.9 28.8 1.0
HZ3 F:LYS96 4.9 26.9 1.0

Fluorine binding site 7 out of 16 in 7yzq

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Fluorine binding site 7 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 7 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F304

b:22.0
occ:1.00
F3 F:ALF304 0.0 22.0 1.0
AL F:ALF304 1.8 23.4 1.0
H F:GLN93 2.1 23.1 1.0
HB3 F:GLN93 2.3 28.4 1.0
HB3 F:SER9 2.3 32.6 1.0
HG F:SER9 2.4 39.1 1.0
F1 F:ALF304 2.5 25.7 1.0
F2 F:ALF304 2.5 20.5 1.0
O1B F:ADP302 2.7 23.4 1.0
H F:ASP94 2.8 24.0 1.0
HE2 F:TYR56 2.8 34.6 1.0
O F:HOH421 2.8 21.2 1.0
OG F:SER9 2.9 32.6 1.0
N F:GLN93 2.9 19.2 1.0
CB F:SER9 3.0 27.2 1.0
CB F:GLN93 3.1 23.7 1.0
H F:SER9 3.3 30.4 1.0
H F:GLY92 3.4 29.0 1.0
CA F:GLN93 3.4 23.8 1.0
N F:ASP94 3.5 20.0 1.0
HB2 F:SER9 3.5 32.6 1.0
OD2 F:ASP94 3.6 25.8 1.0
F4 F:ALF304 3.6 25.9 1.0
CE2 F:TYR56 3.7 28.9 1.0
HB2 F:GLN93 3.7 28.4 1.0
N F:GLY92 3.8 24.2 1.0
C F:GLN93 3.9 24.2 1.0
HD2 F:TYR56 4.0 33.3 1.0
C F:GLY92 4.0 24.2 1.0
N F:SER9 4.0 25.3 1.0
HB2 F:ASP94 4.0 25.3 1.0
CG F:GLN93 4.1 28.2 1.0
HZ1 F:LYS96 4.1 26.9 1.0
HG2 F:GLN93 4.1 33.9 1.0
PB F:ADP302 4.1 22.4 1.0
CA F:SER9 4.1 26.1 1.0
HG3 F:GLN93 4.1 33.9 1.0
HA3 F:GLY91 4.2 26.8 1.0
HA3 F:GLY92 4.2 27.9 1.0
CA F:GLY92 4.2 23.2 1.0
CD2 F:TYR56 4.3 27.7 1.0
HH F:TYR56 4.3 29.5 1.0
HA F:GLN93 4.3 28.6 1.0
CG F:ASP94 4.4 21.0 1.0
CB F:ASP94 4.5 21.1 1.0
CA F:ASP94 4.6 20.6 1.0
C F:GLY91 4.6 24.3 1.0
O3B F:ADP302 4.6 23.4 1.0
H F:THR10 4.6 29.9 1.0
HA F:SER9 4.7 31.3 1.0
CZ F:TYR56 4.7 28.4 1.0
O4 F:SO4305 4.7 27.5 0.5
O F:HOH464 4.8 24.6 1.0
OH F:TYR56 4.8 24.6 1.0
CA F:GLY91 4.9 22.3 1.0
NZ F:LYS96 4.9 22.4 1.0
O2B F:ADP302 4.9 23.3 1.0
HD13 E:ILE161 5.0 37.5 1.0
O3A F:ADP302 5.0 21.8 1.0
OG1 F:THR10 5.0 25.2 1.0

Fluorine binding site 8 out of 16 in 7yzq

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Fluorine binding site 8 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 8 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:F304

b:25.9
occ:1.00
F4 F:ALF304 0.0 25.9 1.0
AL F:ALF304 1.8 23.4 1.0
MG F:MG303 1.9 21.3 1.0
HZ3 F:LYS96 2.4 26.9 1.0
F1 F:ALF304 2.6 25.7 1.0
HZ1 F:LYS96 2.6 26.9 1.0
F2 F:ALF304 2.6 20.5 1.0
O F:HOH473 2.7 21.7 1.0
O1B F:ADP302 2.7 23.4 1.0
O F:HOH444 2.7 23.6 1.0
O F:HOH421 2.7 21.2 1.0
O2B F:ADP302 2.8 23.3 1.0
NZ F:LYS96 2.9 22.4 1.0
OE1 F:GLU69 3.1 25.4 1.0
O F:HOH431 3.1 21.5 1.0
PB F:ADP302 3.3 22.4 1.0
HA3 F:GLY91 3.4 26.8 1.0
F3 F:ALF304 3.6 22.0 1.0
HZ2 F:LYS96 3.6 26.9 1.0
HE2 F:LYS96 3.6 30.9 1.0
CE F:LYS96 3.8 25.8 1.0
O F:HOH464 3.8 24.6 1.0
HE3 F:LYS96 4.0 30.9 1.0
O F:HOH432 4.0 24.0 1.0
CD F:GLU69 4.1 28.8 1.0
HB2 F:ASP94 4.3 25.3 1.0
CA F:GLY91 4.3 22.3 1.0
H F:SER9 4.4 30.4 1.0
H F:GLY92 4.4 29.0 1.0
O3A F:ADP302 4.4 21.8 1.0
O3B F:ADP302 4.4 23.4 1.0
HZ1 F:LYS13 4.5 31.6 1.0
HA3 F:GLY8 4.5 33.6 1.0
OE2 F:GLU69 4.5 19.1 1.0
H F:ASP94 4.6 24.0 1.0
HA2 F:GLY91 4.6 26.8 1.0
HA2 F:GLY8 4.7 33.6 1.0
H F:GLY91 4.8 26.8 1.0
HZ3 F:LYS13 4.8 31.6 1.0
HE2 F:TYR56 4.8 34.6 1.0
O1A F:ADP302 4.9 17.8 1.0
OD1 F:ASP89 4.9 21.6 1.0
H F:GLN93 4.9 23.1 1.0
N F:GLY91 4.9 22.3 1.0
N F:GLY92 5.0 24.2 1.0
OD2 F:ASP89 5.0 24.8 1.0

Fluorine binding site 9 out of 16 in 7yzq

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Fluorine binding site 9 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 9 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F303

b:15.4
occ:1.00
F1 G:ALF303 0.0 15.4 1.0
HG G:SER9 1.7 17.3 1.0
AL G:ALF303 1.8 16.5 1.0
H G:GLN93 2.2 15.0 1.0
HB3 G:GLN93 2.4 15.5 1.0
OG G:SER9 2.5 14.4 1.0
F3 G:ALF303 2.5 14.7 1.0
O1B G:ADP301 2.5 13.5 1.0
F4 G:ALF303 2.6 11.1 1.0
HE2 G:TYR56 2.7 14.7 1.0
O G:HOH430 2.9 12.8 1.0
N G:GLN93 3.0 12.5 1.0
HB3 G:SER9 3.0 18.9 1.0
H G:SER9 3.2 17.6 1.0
CB G:GLN93 3.3 12.9 1.0
CB G:SER9 3.3 15.7 1.0
H G:GLY92 3.3 17.9 1.0
H G:ASP94 3.3 13.1 1.0
F2 G:ALF303 3.6 13.0 1.0
CE2 G:TYR56 3.6 12.3 1.0
CA G:GLN93 3.6 12.5 1.0
OD2 G:ASP94 3.7 14.2 1.0
HB2 G:GLN93 3.8 15.5 1.0
N G:GLY92 3.8 14.9 1.0
HD2 G:TYR56 3.8 13.0 1.0
N G:ASP94 3.9 10.9 1.0
PB G:ADP301 3.9 11.8 1.0
N G:SER9 4.0 14.6 1.0
HB2 G:SER9 4.0 18.9 1.0
C G:GLY92 4.0 14.7 1.0
HA3 G:GLY92 4.1 16.7 1.0
CD2 G:TYR56 4.1 10.8 1.0
HA3 G:GLY91 4.2 15.1 1.0
C G:GLN93 4.2 14.4 1.0
CA G:GLY92 4.2 13.9 1.0
HH G:TYR56 4.2 14.8 1.0
CA G:SER9 4.2 13.8 1.0
HB2 G:ASP94 4.2 15.2 1.0
CG G:GLN93 4.2 18.8 1.0
HG2 G:GLN93 4.2 22.6 1.0
HG3 G:GLN93 4.3 22.6 1.0
O3B G:ADP301 4.4 13.6 1.0
HZ1 G:LYS96 4.4 13.4 1.0
O G:HOH535 4.5 11.8 1.0
HA G:GLN93 4.5 15.0 1.0
H G:THR10 4.6 21.2 1.0
C G:GLY91 4.6 11.3 1.0
HD13 H:ILE161 4.7 24.7 1.0
CG G:ASP94 4.7 14.3 1.0
CZ G:TYR56 4.7 10.9 1.0
O2B G:ADP301 4.8 10.9 1.0
CB G:ASP94 4.8 12.7 1.0
O G:HOH544 4.8 25.5 1.0
O3A G:ADP301 4.8 12.7 1.0
OH G:TYR56 4.8 12.3 1.0
CA G:GLY91 4.9 12.5 1.0
CA G:ASP94 4.9 10.4 1.0
OG1 G:THR10 4.9 23.6 1.0
N G:THR10 5.0 17.7 1.0
HA G:SER9 5.0 16.6 1.0

Fluorine binding site 10 out of 16 in 7yzq

Go back to Fluorine Binding Sites List in 7yzq
Fluorine binding site 10 out of 16 in the Mgadp-ALF4-Bound Dccp:Dccp-R Complex


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 10 of Mgadp-ALF4-Bound Dccp:Dccp-R Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:F303

b:13.0
occ:1.00
F2 G:ALF303 0.0 13.0 1.0
AL G:ALF303 1.8 16.5 1.0
MG G:MG302 1.9 10.7 1.0
HZ3 G:LYS96 2.3 13.4 1.0
F3 G:ALF303 2.5 14.7 1.0
F4 G:ALF303 2.5 11.1 1.0
O G:HOH430 2.6 12.8 1.0
O G:HOH471 2.7 13.1 1.0
HZ1 G:LYS96 2.8 13.4 1.0
O1B G:ADP301 2.8 13.5 1.0
O2B G:ADP301 2.8 10.9 1.0
O G:HOH492 2.8 11.9 1.0
O G:HOH499 2.9 9.3 1.0
NZ G:LYS96 2.9 11.2 1.0
OE1 G:GLU69 2.9 12.9 1.0
PB G:ADP301 3.3 11.8 1.0
HA3 G:GLY91 3.3 15.1 1.0
O G:HOH535 3.5 11.8 1.0
F1 G:ALF303 3.6 15.4 1.0
HZ2 G:LYS96 3.6 13.4 1.0
HE2 G:LYS96 3.6 15.7 1.0
CE G:LYS96 3.8 13.1 1.0
O G:HOH462 4.0 13.3 1.0
CD G:GLU69 4.0 15.0 1.0
HE3 G:LYS96 4.1 15.7 1.0
HB2 G:ASP94 4.2 15.2 1.0
CA G:GLY91 4.3 12.5 1.0
H G:GLY92 4.3 17.9 1.0
O3A G:ADP301 4.4 12.7 1.0
O3B G:ADP301 4.5 13.6 1.0
H G:SER9 4.5 17.6 1.0
HA3 G:GLY8 4.6 20.9 1.0
HA2 G:GLY91 4.6 15.1 1.0
OE2 G:GLU69 4.6 14.5 1.0
H G:ASP94 4.7 13.1 1.0
HZ1 G:LYS13 4.7 15.2 1.0
HG G:SER9 4.7 17.3 1.0
OD1 G:ASP89 4.8 11.5 1.0
HA2 G:GLY8 4.8 20.9 1.0
H G:GLN93 4.9 15.0 1.0
HE2 G:TYR56 4.9 14.7 1.0
H G:GLY91 4.9 16.6 1.0
OD2 G:ASP89 4.9 10.1 1.0
N G:GLY91 4.9 13.8 1.0
N G:GLY92 5.0 14.9 1.0
O2A G:ADP301 5.0 10.2 1.0

Reference:

J.H.Jeoung, S.Nicklisch, H.Dobbek. Structural Basis For Coupled Atp-Driven Electron Transfer in the Double-Cubane Cluster Protein. Proc.Natl.Acad.Sci.Usa V. 119 76119 2022.
ISSN: ESSN 1091-6490
PubMed: 35905315
DOI: 10.1073/PNAS.2203576119
Page generated: Fri Aug 2 16:02:48 2024

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