Fluorine in PDB 7zej: Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.

Enzymatic activity of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.

All present enzymatic activity of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.:
1.3.1.48;

Protein crystallography data

The structure of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib., PDB code: 7zej was solved by N.Shafqat, W.W.Yue, L.Koekemoer, F.Niesen, E.Ugochukwu, M.Vollmar, J.Weigelt, T.Krojer, A.Pike, A.Chaikaud, F.Von Delft, C.Arrowsmith, C.Bountra, A.Edwards, U.Opperman, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.76 / 1.79
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 46.83, 51.41, 75.88, 93.86, 91.48, 101.29
R / Rfree (%) 18.5 / 23.4

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. (pdb code 7zej). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib., PDB code: 7zej:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;

Fluorine binding site 1 out of 6 in 7zej

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Fluorine binding site 1 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:62.6
occ:1.00
F3 A:CEL402 0.0 62.6 1.0
C4 A:CEL402 1.3 60.5 1.0
F1 A:CEL402 2.1 45.7 1.0
F2 A:CEL402 2.2 74.4 1.0
C1 A:CEL402 2.4 67.8 1.0
N1 A:CEL402 2.7 76.4 1.0
HG A:SER68 2.8 13.9 0.0
OH A:TYR77 3.0 33.8 1.0
HH A:TYR77 3.2 22.6 0.0
HE1 A:PHE295 3.2 26.9 1.0
OG A:SER68 3.6 24.4 1.0
HB2 A:SER68 3.6 21.6 1.0
C2 A:CEL402 3.7 69.3 1.0
C3N A:NAP401 3.8 21.9 1.0
HO2N A:NAP401 3.8 16.9 0.0
N2 A:CEL402 3.9 78.2 1.0
CB A:SER68 3.9 21.2 1.0
HB3 A:SER68 3.9 21.6 1.0
C7N A:NAP401 4.0 21.3 1.0
HD1 A:PHE295 4.0 25.9 1.0
H2N A:NAP401 4.0 21.3 1.0
C2N A:NAP401 4.0 21.0 1.0
O7N A:NAP401 4.1 19.2 1.0
CE1 A:PHE295 4.1 27.4 1.0
CZ A:TYR77 4.2 34.6 1.0
O A:HOH573 4.3 19.1 1.0
C4N A:NAP401 4.3 22.1 1.0
HC2 A:CEL402 4.3 69.0 1.0
CD1 A:PHE295 4.5 26.0 1.0
C3 A:CEL402 4.5 68.6 1.0
H4N A:NAP401 4.5 21.9 1.0
HE2 A:TYR77 4.5 34.2 1.0
N7N A:NAP401 4.6 19.4 1.0
O2D A:NAP401 4.6 18.4 1.0
H13C A:CEL402 4.7 79.0 1.0
C12 A:CEL402 4.7 77.4 1.0
N1N A:NAP401 4.8 21.2 1.0
CE2 A:TYR77 4.8 34.9 1.0
H72N A:NAP401 4.9 19.9 1.0
C5N A:NAP401 4.9 21.4 1.0
H71N A:NAP401 4.9 19.9 1.0

Fluorine binding site 2 out of 6 in 7zej

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Fluorine binding site 2 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:74.4
occ:1.00
F2 A:CEL402 0.0 74.4 1.0
C4 A:CEL402 1.3 60.5 1.0
F1 A:CEL402 2.2 45.7 1.0
F3 A:CEL402 2.2 62.6 1.0
C1 A:CEL402 2.3 67.8 1.0
H2N A:NAP401 2.5 21.3 1.0
C2N A:NAP401 2.9 21.0 1.0
N1 A:CEL402 2.9 76.4 1.0
N7N A:NAP401 3.0 19.4 1.0
C7N A:NAP401 3.0 21.3 1.0
C3N A:NAP401 3.1 21.9 1.0
H71N A:NAP401 3.1 19.9 1.0
C2 A:CEL402 3.3 69.3 1.0
H72N A:NAP401 3.3 19.9 1.0
HO2N A:NAP401 3.5 16.9 0.0
O A:ILE260 3.5 16.8 1.0
O7N A:NAP401 3.6 19.2 1.0
HD1 A:PHE295 3.7 25.9 1.0
HC2 A:CEL402 3.7 69.0 1.0
HG A:SER68 3.7 13.9 0.0
N2 A:CEL402 4.0 78.2 1.0
N1N A:NAP401 4.0 21.2 1.0
O2D A:NAP401 4.0 18.4 1.0
HE1 A:PHE295 4.2 26.9 1.0
C4N A:NAP401 4.2 22.1 1.0
C3 A:CEL402 4.2 68.6 1.0
H1D A:NAP401 4.4 19.0 1.0
H13C A:CEL402 4.4 79.0 1.0
OG A:SER68 4.4 24.4 1.0
CD1 A:PHE295 4.5 26.0 1.0
C1D A:NAP401 4.6 18.5 1.0
HA2 A:GLY261 4.6 17.4 1.0
H4N A:NAP401 4.6 21.9 1.0
HA A:PHE295 4.7 19.9 1.0
HH A:TYR266 4.7 4.0 0.0
OH A:TYR266 4.7 16.4 1.0
CE1 A:PHE295 4.7 27.4 1.0
C A:ILE260 4.7 16.8 1.0
HA3 A:GLY261 4.8 17.4 1.0
C6N A:NAP401 4.9 19.9 1.0
C2D A:NAP401 4.9 18.8 1.0
O A:PHE294 4.9 15.9 1.0
C5N A:NAP401 5.0 21.4 1.0
OH A:TYR77 5.0 33.8 1.0
C12 A:CEL402 5.0 77.4 1.0

Fluorine binding site 3 out of 6 in 7zej

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Fluorine binding site 3 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F402

b:45.7
occ:1.00
F1 A:CEL402 0.0 45.7 1.0
C4 A:CEL402 1.3 60.5 1.0
HO2N A:NAP401 1.8 16.9 0.0
F3 A:CEL402 2.1 62.6 1.0
F2 A:CEL402 2.2 74.4 1.0
HG A:SER68 2.2 13.9 0.0
C1 A:CEL402 2.5 67.8 1.0
O2D A:NAP401 2.6 18.4 1.0
OG A:SER68 2.7 24.4 1.0
H2N A:NAP401 3.0 21.3 1.0
O A:HOH573 3.1 19.1 1.0
C2N A:NAP401 3.1 21.0 1.0
HB2 A:SER68 3.2 21.6 1.0
C2 A:CEL402 3.2 69.3 1.0
HC2 A:CEL402 3.3 69.0 1.0
CB A:SER68 3.4 21.2 1.0
N1N A:NAP401 3.5 21.2 1.0
C2D A:NAP401 3.6 18.8 1.0
N1 A:CEL402 3.6 76.4 1.0
C3N A:NAP401 3.7 21.9 1.0
H2D A:NAP401 3.7 18.5 1.0
C1D A:NAP401 3.9 18.5 1.0
HB3 A:SER68 3.9 21.6 1.0
OH A:TYR266 4.0 16.4 1.0
H1D A:NAP401 4.0 19.0 1.0
HH A:TYR77 4.1 22.6 0.0
C6N A:NAP401 4.1 19.9 1.0
C4N A:NAP401 4.3 22.1 1.0
OH A:TYR77 4.3 33.8 1.0
H A:SER68 4.3 18.7 1.0
C7N A:NAP401 4.4 21.3 1.0
HH A:TYR266 4.4 4.0 0.0
C3 A:CEL402 4.5 68.6 1.0
C5N A:NAP401 4.5 21.4 1.0
HE2 A:TYR266 4.5 16.6 1.0
N2 A:CEL402 4.5 78.2 1.0
HD22 A:ASN71 4.6 20.9 1.0
CA A:SER68 4.6 20.0 1.0
O A:ILE260 4.7 16.8 1.0
H6N A:NAP401 4.7 20.5 1.0
H71N A:NAP401 4.7 19.9 1.0
N7N A:NAP401 4.7 19.4 1.0
HO3N A:NAP401 4.7 19.9 0.0
CZ A:TYR266 4.8 17.4 1.0
N A:SER68 4.8 18.3 1.0
HA A:SER68 4.9 19.6 1.0
H4N A:NAP401 4.9 21.9 1.0
HA3 A:GLY261 4.9 17.4 1.0
CE2 A:TYR266 4.9 16.4 1.0
HB3 A:ALA67 4.9 17.9 1.0
C3D A:NAP401 4.9 17.8 1.0
O7N A:NAP401 5.0 19.2 1.0

Fluorine binding site 4 out of 6 in 7zej

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Fluorine binding site 4 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:40.1
occ:1.00
F3 B:CEL402 0.0 40.1 1.0
C4 B:CEL402 1.3 56.4 1.0
HO2N B:NAP401 2.1 16.4 0.0
F2 B:CEL402 2.1 58.1 1.0
F1 B:CEL402 2.2 64.3 1.0
HG B:SER68 2.4 12.1 0.0
C1 B:CEL402 2.5 57.2 1.0
HB2 B:SER68 2.6 23.3 1.0
OG B:SER68 2.9 27.3 1.0
O2D B:NAP401 2.9 18.1 1.0
O B:HOH571 3.1 14.9 1.0
CB B:SER68 3.2 22.6 1.0
C2 B:CEL402 3.4 57.6 1.0
H2N B:NAP401 3.4 17.2 1.0
N1 B:CEL402 3.5 61.0 1.0
C2N B:NAP401 3.5 16.7 1.0
HB3 B:SER68 3.7 23.3 1.0
HC2 B:CEL402 3.7 57.5 1.0
HH B:TYR77 3.9 21.9 0.0
C2D B:NAP401 3.9 18.4 1.0
N1N B:NAP401 3.9 17.2 1.0
C3N B:NAP401 4.0 17.8 1.0
H2D B:NAP401 4.0 18.4 1.0
OH B:TYR77 4.1 40.1 1.0
H B:SER68 4.2 19.4 1.0
OH B:TYR266 4.2 19.3 1.0
C1D B:NAP401 4.4 18.2 1.0
CA B:SER68 4.4 21.4 1.0
HE2 B:TYR266 4.4 18.9 1.0
HD22 B:ASN71 4.5 24.0 1.0
C6N B:NAP401 4.5 17.8 1.0
C4N B:NAP401 4.5 18.1 1.0
H1D B:NAP401 4.5 18.1 1.0
C7N B:NAP401 4.5 18.7 1.0
N2 B:CEL402 4.5 60.5 1.0
C3 B:CEL402 4.5 57.2 1.0
N B:SER68 4.6 19.1 1.0
HH B:TYR266 4.7 9.5 0.0
HA B:SER68 4.7 21.0 1.0
C5N B:NAP401 4.8 18.3 1.0
HB3 B:ALA67 4.8 19.2 1.0
H71N B:NAP401 4.8 18.3 1.0
N7N B:NAP401 4.8 18.1 1.0
CZ B:TYR266 4.9 19.5 1.0
CE2 B:TYR266 4.9 19.0 1.0
H6N B:NAP401 5.0 17.8 1.0
H4N B:NAP401 5.0 18.1 1.0

Fluorine binding site 5 out of 6 in 7zej

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Fluorine binding site 5 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 5 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:58.1
occ:1.00
F2 B:CEL402 0.0 58.1 1.0
C4 B:CEL402 1.3 56.4 1.0
F3 B:CEL402 2.1 40.1 1.0
F1 B:CEL402 2.2 64.3 1.0
C1 B:CEL402 2.3 57.2 1.0
N1 B:CEL402 2.6 61.0 1.0
HD1 B:PHE295 3.3 25.5 1.0
HE1 B:PHE295 3.4 26.4 1.0
C7N B:NAP401 3.4 18.7 1.0
H2N B:NAP401 3.6 17.2 1.0
C3N B:NAP401 3.6 17.8 1.0
C2 B:CEL402 3.6 57.6 1.0
HG B:SER68 3.6 12.1 0.0
N7N B:NAP401 3.7 18.1 1.0
O7N B:NAP401 3.7 18.9 1.0
C2N B:NAP401 3.8 16.7 1.0
N2 B:CEL402 3.9 60.5 1.0
HO2N B:NAP401 3.9 16.4 0.0
H72N B:NAP401 3.9 18.3 1.0
CD1 B:PHE295 3.9 25.6 1.0
CE1 B:PHE295 4.0 26.9 1.0
H71N B:NAP401 4.0 18.3 1.0
OH B:TYR77 4.0 40.1 1.0
HC2 B:CEL402 4.1 57.5 1.0
HH B:TYR77 4.1 21.9 0.0
HB2 B:SER68 4.3 23.3 1.0
OG B:SER68 4.3 27.3 1.0
C4N B:NAP401 4.4 18.1 1.0
C3 B:CEL402 4.4 57.2 1.0
H4N B:NAP401 4.6 18.1 1.0
H17C B:CEL402 4.6 58.5 1.0
O2D B:NAP401 4.6 18.1 1.0
CB B:SER68 4.7 22.6 1.0
HA B:PHE295 4.7 22.6 1.0
C17 B:CEL402 4.7 59.0 1.0
C12 B:CEL402 4.7 57.4 1.0
N1N B:NAP401 4.8 17.2 1.0
HB3 B:SER68 4.8 23.3 1.0
O B:HOH571 4.8 14.9 1.0
H B:LEU296 5.0 20.8 1.0
O B:ILE260 5.0 21.1 1.0

Fluorine binding site 6 out of 6 in 7zej

Go back to Fluorine Binding Sites List in 7zej
Fluorine binding site 6 out of 6 in the Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 6 of Crystal Structure of the Human MGC45594 Gene Product in Complex with Celecoxib. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:F402

b:64.3
occ:1.00
F1 B:CEL402 0.0 64.3 1.0
C4 B:CEL402 1.3 56.4 1.0
F3 B:CEL402 2.2 40.1 1.0
F2 B:CEL402 2.2 58.1 1.0
C1 B:CEL402 2.3 57.2 1.0
H2N B:NAP401 2.4 17.2 1.0
HO2N B:NAP401 2.7 16.4 0.0
HC2 B:CEL402 2.8 57.5 1.0
C2 B:CEL402 3.0 57.6 1.0
C2N B:NAP401 3.0 16.7 1.0
H71N B:NAP401 3.2 18.3 1.0
O2D B:NAP401 3.2 18.1 1.0
O B:ILE260 3.3 21.1 1.0
N1 B:CEL402 3.3 61.0 1.0
N7N B:NAP401 3.4 18.1 1.0
C3N B:NAP401 3.6 17.8 1.0
OH B:TYR266 3.6 19.3 1.0
C7N B:NAP401 3.7 18.7 1.0
HA2 B:GLY261 3.7 20.0 1.0
HH B:TYR266 3.7 9.5 0.0
H72N B:NAP401 3.7 18.3 1.0
H1D B:NAP401 3.8 18.1 1.0
HG B:SER68 3.9 12.1 0.0
N1N B:NAP401 3.9 17.2 1.0
HA3 B:GLY261 4.0 20.0 1.0
C3 B:CEL402 4.1 57.2 1.0
C1D B:NAP401 4.2 18.2 1.0
C2D B:NAP401 4.2 18.4 1.0
N2 B:CEL402 4.2 60.5 1.0
CA B:GLY261 4.3 19.7 1.0
C B:ILE260 4.4 19.6 1.0
OG B:SER68 4.4 27.3 1.0
O7N B:NAP401 4.5 18.9 1.0
HD1 B:PHE295 4.7 25.5 1.0
C4N B:NAP401 4.7 18.1 1.0
H2D B:NAP401 4.7 18.4 1.0
HB2 B:SER68 4.7 23.3 1.0
CZ B:TYR266 4.8 19.5 1.0
N B:GLY261 4.8 20.4 1.0
HO3N B:NAP401 4.9 25.8 0.0
O B:HOH571 4.9 14.9 1.0
C6N B:NAP401 4.9 17.8 1.0

Reference:

N.Shafqat, S.G.Dakin, F.M.Estrada, F.H.Niesen, G.Wells, C.Yapp, M.K.Troumpra, D.Brotherton, S.Porte, J.Mesa, E.Yakovtseva, J.Farres, X.Pares, T.Liu, R.Altman, A.Carr, L.Koekemoer, F.Niesen, W.W.Yue, U.Opperman. Human Prostaglandin/Alkenal Reductases: Substrate Specificities, Inhibitor Profiles, Structural Insights and Subcellular Localization Suggest Protective Roles in Inflammatory and Oxidative Stress Conditions. To Be Published.
Page generated: Fri Aug 2 16:08:36 2024

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