Fluorine in PDB 7ziy: X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
All present enzymatic activity of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5):
3.8.1.5;
3.8.1.5;
Protein crystallography data
The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5), PDB code: 7ziy
was solved by
M.Tarnawski,
J.Kompa,
K.Johnsson,
J.Hiblot,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 39.40 / 1.70 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 44.24, 46.06, 79.06, 94.41, 90, 109.51 |
| R / Rfree (%) | 19.1 / 22.4 |
Other elements in 7ziy:
The structure of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) also contains other interesting chemical elements:
| Calcium | (Ca) | 2 atoms |
Fluorine Binding Sites:
The binding sites of Fluorine atom in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
(pdb code 7ziy). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 6 binding sites of Fluorine where determined in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5), PDB code: 7ziy:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Fluorine where determined in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5), PDB code: 7ziy:
Jump to Fluorine binding site number: 1; 2; 3; 4; 5; 6;
Fluorine binding site 1 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 1 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 1 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Fluorine binding site 2 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 2 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 2 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Fluorine binding site 3 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 3 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 3 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Fluorine binding site 4 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 4 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 4 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Fluorine binding site 5 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 5 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 5 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Fluorine binding site 6 out of 6 in 7ziy
Go back to
Fluorine Binding Sites List in 7ziy
Fluorine binding site 6 out
of 6 in the X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Fluorine with other atoms in the F binding
site number 6 of X-Ray Structure of the Haloalkane Dehalogenase HALOTAG7 Bound to A Pentyltrifluoromethanesulfonamide Tetramethylrhodamine Ligand (Tmr- T5) within 5.0Å range:
|
Reference:
J.Kompa,
J.Bruins,
M.Glogger,
J.Wilhelm,
M.S.Frei,
M.Tarnawski,
E.D’Este,
M.Heilemann,
J.Hiblot,
K.Johnsson.
Exchangeable Halotag Ligands For Super-Resolution Fluorescence Microscopy J.Am.Chem.Soc. 2023.
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.2C11969
Page generated: Fri Aug 2 16:10:16 2024
ISSN: ESSN 1520-5126
DOI: 10.1021/JACS.2C11969
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