Fluorine in PDB 7zke: MOT1:Tbp:Dna - Pre-Hydrolysis State
Other elements in 7zke:
The structure of MOT1:Tbp:Dna - Pre-Hydrolysis State also contains other interesting chemical elements:
Fluorine Binding Sites:
The binding sites of Fluorine atom in the MOT1:Tbp:Dna - Pre-Hydrolysis State
(pdb code 7zke). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the
MOT1:Tbp:Dna - Pre-Hydrolysis State, PDB code: 7zke:
Jump to Fluorine binding site number:
1;
2;
3;
Fluorine binding site 1 out
of 3 in 7zke
Go back to
Fluorine Binding Sites List in 7zke
Fluorine binding site 1 out
of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1903
b:76.8
occ:1.00
|
F1
|
E:BEF1903
|
0.0
|
76.8
|
1.0
|
|
BE
|
E:BEF1903
|
1.5
|
72.8
|
1.0
|
|
OE2
|
E:GLU1434
|
2.2
|
27.5
|
1.0
|
|
MG
|
E:MG1901
|
2.5
|
78.1
|
1.0
|
|
F3
|
E:BEF1903
|
2.5
|
65.8
|
1.0
|
|
O1B
|
E:ADP1902
|
2.6
|
85.0
|
1.0
|
|
F2
|
E:BEF1903
|
2.6
|
65.8
|
1.0
|
|
CD
|
E:GLU1434
|
3.2
|
27.5
|
1.0
|
|
PB
|
E:ADP1902
|
3.3
|
98.5
|
1.0
|
|
O2B
|
E:ADP1902
|
3.4
|
86.3
|
1.0
|
|
HA2
|
E:GLY1732
|
3.4
|
32.4
|
1.0
|
|
O3B
|
E:ADP1902
|
3.5
|
103.8
|
1.0
|
|
HA3
|
E:GLY1732
|
3.5
|
32.4
|
1.0
|
|
HZ1
|
E:LYS1328
|
3.6
|
25.8
|
1.0
|
|
HE21
|
E:GLN1755
|
3.8
|
33.6
|
1.0
|
|
OE1
|
E:GLU1434
|
3.8
|
27.5
|
1.0
|
|
HE2
|
E:LYS1328
|
3.9
|
25.8
|
1.0
|
|
CA
|
E:GLY1732
|
3.9
|
32.4
|
1.0
|
|
HG2
|
E:GLU1434
|
4.1
|
27.5
|
1.0
|
|
HE22
|
E:GLN1755
|
4.1
|
33.6
|
1.0
|
|
HE3
|
E:LYS1328
|
4.2
|
25.8
|
1.0
|
|
NE2
|
E:GLN1755
|
4.3
|
33.6
|
1.0
|
|
CE
|
E:LYS1328
|
4.3
|
25.8
|
1.0
|
|
NZ
|
E:LYS1328
|
4.3
|
25.8
|
1.0
|
|
CG
|
E:GLU1434
|
4.3
|
27.5
|
1.0
|
|
OD1
|
E:ASP1433
|
4.3
|
26.5
|
1.0
|
|
N
|
E:GLY1732
|
4.5
|
32.4
|
1.0
|
|
H
|
E:GLY1732
|
4.6
|
32.4
|
1.0
|
|
HZ2
|
E:LYS1328
|
4.6
|
25.8
|
1.0
|
|
HH22
|
E:ARG1762
|
4.7
|
31.7
|
1.0
|
|
H
|
E:GLU1434
|
4.7
|
27.5
|
1.0
|
|
HG3
|
E:GLU1434
|
4.8
|
27.5
|
1.0
|
|
H
|
E:GLY1462
|
4.8
|
27.5
|
1.0
|
|
O3A
|
E:ADP1902
|
4.8
|
80.0
|
1.0
|
|
N
|
E:GLY1462
|
4.9
|
27.5
|
1.0
|
|
HA
|
E:GLU1434
|
5.0
|
27.5
|
1.0
|
|
Fluorine binding site 2 out
of 3 in 7zke
Go back to
Fluorine Binding Sites List in 7zke
Fluorine binding site 2 out
of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1903
b:65.8
occ:1.00
|
F2
|
E:BEF1903
|
0.0
|
65.8
|
1.0
|
|
BE
|
E:BEF1903
|
1.6
|
72.8
|
1.0
|
|
HE22
|
E:GLN1755
|
2.0
|
33.6
|
1.0
|
|
HE21
|
E:GLN1755
|
2.2
|
33.6
|
1.0
|
|
NE2
|
E:GLN1755
|
2.3
|
33.6
|
1.0
|
|
F3
|
E:BEF1903
|
2.5
|
65.8
|
1.0
|
|
F1
|
E:BEF1903
|
2.6
|
76.8
|
1.0
|
|
OE1
|
E:GLU1434
|
2.7
|
27.5
|
1.0
|
|
H
|
E:GLY1462
|
2.7
|
27.5
|
1.0
|
|
OE2
|
E:GLU1434
|
2.8
|
27.5
|
1.0
|
|
HA3
|
E:GLY1462
|
2.9
|
27.5
|
1.0
|
|
N
|
E:GLY1462
|
3.0
|
27.5
|
1.0
|
|
CD
|
E:GLU1434
|
3.1
|
27.5
|
1.0
|
|
CA
|
E:GLY1462
|
3.3
|
27.5
|
1.0
|
|
HG2
|
E:MET1324
|
3.5
|
30.6
|
1.0
|
|
CD
|
E:GLN1755
|
3.6
|
33.6
|
1.0
|
|
HA2
|
E:GLY1462
|
3.6
|
27.5
|
1.0
|
|
C
|
E:THR1461
|
3.8
|
25.1
|
1.0
|
|
HA
|
E:THR1461
|
3.9
|
25.1
|
1.0
|
|
HZ1
|
E:LYS1328
|
4.0
|
25.8
|
1.0
|
|
HE2
|
E:HIS1436
|
4.1
|
28.2
|
1.0
|
|
OE1
|
E:GLN1755
|
4.2
|
33.6
|
1.0
|
|
HG3
|
E:GLN1755
|
4.3
|
33.6
|
1.0
|
|
O1B
|
E:ADP1902
|
4.3
|
85.0
|
1.0
|
|
CG
|
E:MET1324
|
4.4
|
30.6
|
1.0
|
|
HA
|
E:GLU1434
|
4.4
|
27.5
|
1.0
|
|
CA
|
E:THR1461
|
4.4
|
25.1
|
1.0
|
|
HD2
|
E:HIS1436
|
4.5
|
28.2
|
1.0
|
|
CG
|
E:GLN1755
|
4.5
|
33.6
|
1.0
|
|
HG3
|
E:MET1324
|
4.5
|
30.6
|
1.0
|
|
O
|
E:THR1461
|
4.5
|
25.1
|
1.0
|
|
HE3
|
E:LYS1328
|
4.5
|
25.8
|
1.0
|
|
CG
|
E:GLU1434
|
4.6
|
27.5
|
1.0
|
|
HD22
|
E:LEU1731
|
4.6
|
32.6
|
1.0
|
|
HA2
|
E:GLY1732
|
4.7
|
32.4
|
1.0
|
|
HG2
|
E:GLN1755
|
4.7
|
33.6
|
1.0
|
|
NE2
|
E:HIS1436
|
4.7
|
28.2
|
1.0
|
|
C
|
E:GLY1462
|
4.8
|
27.5
|
1.0
|
|
H
|
E:THR1463
|
4.8
|
30.4
|
1.0
|
|
H
|
E:GLY1732
|
4.8
|
32.4
|
1.0
|
|
NZ
|
E:LYS1328
|
4.8
|
25.8
|
1.0
|
|
HG2
|
E:GLU1434
|
4.9
|
27.5
|
1.0
|
|
HB3
|
E:LEU1731
|
4.9
|
32.6
|
1.0
|
|
HA
|
E:MET1324
|
4.9
|
30.6
|
1.0
|
|
MG
|
E:MG1901
|
4.9
|
78.1
|
1.0
|
|
HA3
|
E:GLY1732
|
5.0
|
32.4
|
1.0
|
|
CD2
|
E:HIS1436
|
5.0
|
28.2
|
1.0
|
|
Fluorine binding site 3 out
of 3 in 7zke
Go back to
Fluorine Binding Sites List in 7zke
Fluorine binding site 3 out
of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State
 Mono view
 Stereo pair view
|
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:F1903
b:65.8
occ:1.00
|
F3
|
E:BEF1903
|
0.0
|
65.8
|
1.0
|
|
BE
|
E:BEF1903
|
1.5
|
72.8
|
1.0
|
|
HE21
|
E:GLN1755
|
2.0
|
33.6
|
1.0
|
|
F2
|
E:BEF1903
|
2.5
|
65.8
|
1.0
|
|
F1
|
E:BEF1903
|
2.5
|
76.8
|
1.0
|
|
HA2
|
E:GLY1732
|
2.6
|
32.4
|
1.0
|
|
NE2
|
E:GLN1755
|
2.8
|
33.6
|
1.0
|
|
H
|
E:GLY1732
|
3.0
|
32.4
|
1.0
|
|
HE22
|
E:GLN1755
|
3.2
|
33.6
|
1.0
|
|
OE2
|
E:GLU1434
|
3.3
|
27.5
|
1.0
|
|
HG2
|
E:MET1324
|
3.3
|
30.6
|
1.0
|
|
CA
|
E:GLY1732
|
3.3
|
32.4
|
1.0
|
|
N
|
E:GLY1732
|
3.4
|
32.4
|
1.0
|
|
O2B
|
E:ADP1902
|
3.5
|
86.3
|
1.0
|
|
HA3
|
E:GLY1732
|
3.6
|
32.4
|
1.0
|
|
HG3
|
E:GLN1755
|
3.6
|
33.6
|
1.0
|
|
O1B
|
E:ADP1902
|
3.7
|
85.0
|
1.0
|
|
HH22
|
E:ARG1762
|
3.7
|
31.7
|
1.0
|
|
HG2
|
E:GLN1755
|
3.8
|
33.6
|
1.0
|
|
CD
|
E:GLN1755
|
3.8
|
33.6
|
1.0
|
|
HB3
|
E:MET1324
|
3.9
|
30.6
|
1.0
|
|
CG
|
E:GLN1755
|
4.0
|
33.6
|
1.0
|
|
HH21
|
E:ARG1762
|
4.2
|
31.7
|
1.0
|
|
CG
|
E:MET1324
|
4.2
|
30.6
|
1.0
|
|
PB
|
E:ADP1902
|
4.2
|
98.5
|
1.0
|
|
CD
|
E:GLU1434
|
4.3
|
27.5
|
1.0
|
|
HZ1
|
E:LYS1328
|
4.3
|
25.8
|
1.0
|
|
NH2
|
E:ARG1762
|
4.3
|
31.7
|
1.0
|
|
HA
|
E:LEU1731
|
4.3
|
32.6
|
1.0
|
|
HA
|
E:MET1324
|
4.4
|
30.6
|
1.0
|
|
HA3
|
E:GLY1462
|
4.4
|
27.5
|
1.0
|
|
OE1
|
E:GLU1434
|
4.4
|
27.5
|
1.0
|
|
CB
|
E:MET1324
|
4.5
|
30.6
|
1.0
|
|
C
|
E:LEU1731
|
4.5
|
32.6
|
1.0
|
|
C
|
E:GLY1732
|
4.6
|
32.4
|
1.0
|
|
MG
|
E:MG1901
|
4.7
|
78.1
|
1.0
|
|
HG3
|
E:MET1324
|
4.7
|
30.6
|
1.0
|
|
HB3
|
E:ARG1759
|
4.9
|
33.3
|
1.0
|
|
CA
|
E:LEU1731
|
4.9
|
32.6
|
1.0
|
|
HB3
|
E:LEU1731
|
4.9
|
32.6
|
1.0
|
|
HA2
|
E:GLY1462
|
4.9
|
27.5
|
1.0
|
|
CA
|
E:MET1324
|
5.0
|
30.6
|
1.0
|
|
OE1
|
E:GLN1755
|
5.0
|
33.6
|
1.0
|
|
Reference:
S.Woike,
S.Eustermann,
J.Jung,
S.J.Wenzl,
G.Hagemann,
J.D.Bartho,
K.Lammens,
A.Butryn,
F.Herzog,
K.-P.Hopfner.
Structural Basis For Tbp Displacement From Tata Box Dna By the SWI2/SNF2 Atpase MOT1 To Be Published.
Page generated: Thu Jul 27 13:41:09 2023
|
