Fluorine in PDB 7zke: MOT1:Tbp:Dna - Pre-Hydrolysis State

Other elements in 7zke:

The structure of MOT1:Tbp:Dna - Pre-Hydrolysis State also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the MOT1:Tbp:Dna - Pre-Hydrolysis State (pdb code 7zke). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the MOT1:Tbp:Dna - Pre-Hydrolysis State, PDB code: 7zke:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 7zke

Go back to Fluorine Binding Sites List in 7zke
Fluorine binding site 1 out of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F1903

b:76.8
occ:1.00
F1 E:BEF1903 0.0 76.8 1.0
BE E:BEF1903 1.5 72.8 1.0
OE2 E:GLU1434 2.2 27.5 1.0
MG E:MG1901 2.5 78.1 1.0
F3 E:BEF1903 2.5 65.8 1.0
O1B E:ADP1902 2.6 85.0 1.0
F2 E:BEF1903 2.6 65.8 1.0
CD E:GLU1434 3.2 27.5 1.0
PB E:ADP1902 3.3 98.5 1.0
O2B E:ADP1902 3.4 86.3 1.0
HA2 E:GLY1732 3.4 32.4 1.0
O3B E:ADP1902 3.5 103.8 1.0
HA3 E:GLY1732 3.5 32.4 1.0
HZ1 E:LYS1328 3.6 25.8 1.0
HE21 E:GLN1755 3.8 33.6 1.0
OE1 E:GLU1434 3.8 27.5 1.0
HE2 E:LYS1328 3.9 25.8 1.0
CA E:GLY1732 3.9 32.4 1.0
HG2 E:GLU1434 4.1 27.5 1.0
HE22 E:GLN1755 4.1 33.6 1.0
HE3 E:LYS1328 4.2 25.8 1.0
NE2 E:GLN1755 4.3 33.6 1.0
CE E:LYS1328 4.3 25.8 1.0
NZ E:LYS1328 4.3 25.8 1.0
CG E:GLU1434 4.3 27.5 1.0
OD1 E:ASP1433 4.3 26.5 1.0
N E:GLY1732 4.5 32.4 1.0
H E:GLY1732 4.6 32.4 1.0
HZ2 E:LYS1328 4.6 25.8 1.0
HH22 E:ARG1762 4.7 31.7 1.0
H E:GLU1434 4.7 27.5 1.0
HG3 E:GLU1434 4.8 27.5 1.0
H E:GLY1462 4.8 27.5 1.0
O3A E:ADP1902 4.8 80.0 1.0
N E:GLY1462 4.9 27.5 1.0
HA E:GLU1434 5.0 27.5 1.0

Fluorine binding site 2 out of 3 in 7zke

Go back to Fluorine Binding Sites List in 7zke
Fluorine binding site 2 out of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F1903

b:65.8
occ:1.00
F2 E:BEF1903 0.0 65.8 1.0
BE E:BEF1903 1.6 72.8 1.0
HE22 E:GLN1755 2.0 33.6 1.0
HE21 E:GLN1755 2.2 33.6 1.0
NE2 E:GLN1755 2.3 33.6 1.0
F3 E:BEF1903 2.5 65.8 1.0
F1 E:BEF1903 2.6 76.8 1.0
OE1 E:GLU1434 2.7 27.5 1.0
H E:GLY1462 2.7 27.5 1.0
OE2 E:GLU1434 2.8 27.5 1.0
HA3 E:GLY1462 2.9 27.5 1.0
N E:GLY1462 3.0 27.5 1.0
CD E:GLU1434 3.1 27.5 1.0
CA E:GLY1462 3.3 27.5 1.0
HG2 E:MET1324 3.5 30.6 1.0
CD E:GLN1755 3.6 33.6 1.0
HA2 E:GLY1462 3.6 27.5 1.0
C E:THR1461 3.8 25.1 1.0
HA E:THR1461 3.9 25.1 1.0
HZ1 E:LYS1328 4.0 25.8 1.0
HE2 E:HIS1436 4.1 28.2 1.0
OE1 E:GLN1755 4.2 33.6 1.0
HG3 E:GLN1755 4.3 33.6 1.0
O1B E:ADP1902 4.3 85.0 1.0
CG E:MET1324 4.4 30.6 1.0
HA E:GLU1434 4.4 27.5 1.0
CA E:THR1461 4.4 25.1 1.0
HD2 E:HIS1436 4.5 28.2 1.0
CG E:GLN1755 4.5 33.6 1.0
HG3 E:MET1324 4.5 30.6 1.0
O E:THR1461 4.5 25.1 1.0
HE3 E:LYS1328 4.5 25.8 1.0
CG E:GLU1434 4.6 27.5 1.0
HD22 E:LEU1731 4.6 32.6 1.0
HA2 E:GLY1732 4.7 32.4 1.0
HG2 E:GLN1755 4.7 33.6 1.0
NE2 E:HIS1436 4.7 28.2 1.0
C E:GLY1462 4.8 27.5 1.0
H E:THR1463 4.8 30.4 1.0
H E:GLY1732 4.8 32.4 1.0
NZ E:LYS1328 4.8 25.8 1.0
HG2 E:GLU1434 4.9 27.5 1.0
HB3 E:LEU1731 4.9 32.6 1.0
HA E:MET1324 4.9 30.6 1.0
MG E:MG1901 4.9 78.1 1.0
HA3 E:GLY1732 5.0 32.4 1.0
CD2 E:HIS1436 5.0 28.2 1.0

Fluorine binding site 3 out of 3 in 7zke

Go back to Fluorine Binding Sites List in 7zke
Fluorine binding site 3 out of 3 in the MOT1:Tbp:Dna - Pre-Hydrolysis State


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of MOT1:Tbp:Dna - Pre-Hydrolysis State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:F1903

b:65.8
occ:1.00
F3 E:BEF1903 0.0 65.8 1.0
BE E:BEF1903 1.5 72.8 1.0
HE21 E:GLN1755 2.0 33.6 1.0
F2 E:BEF1903 2.5 65.8 1.0
F1 E:BEF1903 2.5 76.8 1.0
HA2 E:GLY1732 2.6 32.4 1.0
NE2 E:GLN1755 2.8 33.6 1.0
H E:GLY1732 3.0 32.4 1.0
HE22 E:GLN1755 3.2 33.6 1.0
OE2 E:GLU1434 3.3 27.5 1.0
HG2 E:MET1324 3.3 30.6 1.0
CA E:GLY1732 3.3 32.4 1.0
N E:GLY1732 3.4 32.4 1.0
O2B E:ADP1902 3.5 86.3 1.0
HA3 E:GLY1732 3.6 32.4 1.0
HG3 E:GLN1755 3.6 33.6 1.0
O1B E:ADP1902 3.7 85.0 1.0
HH22 E:ARG1762 3.7 31.7 1.0
HG2 E:GLN1755 3.8 33.6 1.0
CD E:GLN1755 3.8 33.6 1.0
HB3 E:MET1324 3.9 30.6 1.0
CG E:GLN1755 4.0 33.6 1.0
HH21 E:ARG1762 4.2 31.7 1.0
CG E:MET1324 4.2 30.6 1.0
PB E:ADP1902 4.2 98.5 1.0
CD E:GLU1434 4.3 27.5 1.0
HZ1 E:LYS1328 4.3 25.8 1.0
NH2 E:ARG1762 4.3 31.7 1.0
HA E:LEU1731 4.3 32.6 1.0
HA E:MET1324 4.4 30.6 1.0
HA3 E:GLY1462 4.4 27.5 1.0
OE1 E:GLU1434 4.4 27.5 1.0
CB E:MET1324 4.5 30.6 1.0
C E:LEU1731 4.5 32.6 1.0
C E:GLY1732 4.6 32.4 1.0
MG E:MG1901 4.7 78.1 1.0
HG3 E:MET1324 4.7 30.6 1.0
HB3 E:ARG1759 4.9 33.3 1.0
CA E:LEU1731 4.9 32.6 1.0
HB3 E:LEU1731 4.9 32.6 1.0
HA2 E:GLY1462 4.9 27.5 1.0
CA E:MET1324 5.0 30.6 1.0
OE1 E:GLN1755 5.0 33.6 1.0

Reference:

S.Woike, S.Eustermann, J.Jung, S.J.Wenzl, G.Hagemann, J.D.Bartho, K.Lammens, A.Butryn, F.Herzog, K.-P.Hopfner. Structural Basis For Tbp Displacement From Tata Box Dna By the SWI2/SNF2 Atpase MOT1 To Be Published.
Page generated: Fri Aug 2 16:13:41 2024

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