Fluorine in PDB 7zyx: Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Fluorine Binding Sites:
The binding sites of Fluorine atom in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
(pdb code 7zyx). This binding sites where shown within
5.0 Angstroms radius around Fluorine atom.
In total 10 binding sites of Fluorine where determined in the
Dimeric I-Motif From 2'Farabinocytidine-Modified TC5, PDB code: 7zyx:
Jump to Fluorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Fluorine binding site 1 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 1 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 1 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F2
b:0.0
occ:1.00
|
F
|
A:CFL2
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL2
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL2
|
2.0
|
0.0
|
1.0
|
C3'
|
A:CFL2
|
2.4
|
0.0
|
1.0
|
C1'
|
A:CFL2
|
2.4
|
0.0
|
1.0
|
H5'2
|
A:CFL2
|
2.5
|
0.0
|
1.0
|
HN42
|
B:CFL12
|
2.5
|
0.0
|
1.0
|
H3'
|
A:CFL2
|
2.5
|
0.0
|
1.0
|
HN41
|
B:CFL12
|
2.7
|
0.0
|
1.0
|
N1
|
A:CFL2
|
2.8
|
0.0
|
1.0
|
H6
|
A:CFL2
|
2.9
|
0.0
|
1.0
|
N4
|
B:CFL12
|
2.9
|
0.0
|
1.0
|
O4'
|
A:CFL2
|
3.0
|
0.0
|
1.0
|
C4'
|
A:CFL2
|
3.0
|
0.0
|
1.0
|
C6
|
A:CFL2
|
3.0
|
0.0
|
1.0
|
C5'
|
A:CFL2
|
3.2
|
0.0
|
1.0
|
H1'
|
A:CFL2
|
3.3
|
0.0
|
1.0
|
O2
|
A:CFL6
|
3.4
|
0.0
|
1.0
|
O3'
|
A:CFL2
|
3.6
|
0.0
|
1.0
|
H5'2
|
A:CFL3
|
3.7
|
0.0
|
1.0
|
H5'1
|
A:CFL2
|
3.7
|
0.0
|
1.0
|
C2
|
A:CFL2
|
3.9
|
0.0
|
1.0
|
H1'
|
A:CFL6
|
4.0
|
0.0
|
1.0
|
O4'
|
A:CFL3
|
4.0
|
0.0
|
1.0
|
C6
|
A:CFL3
|
4.0
|
0.0
|
1.0
|
H4'
|
A:CFL2
|
4.1
|
0.0
|
1.0
|
C5
|
A:CFL2
|
4.1
|
0.0
|
1.0
|
H6
|
A:CFL3
|
4.1
|
0.0
|
1.0
|
C4
|
B:CFL12
|
4.2
|
0.0
|
1.0
|
N1
|
A:CFL3
|
4.3
|
0.0
|
1.0
|
O5'
|
A:CFL2
|
4.3
|
0.0
|
1.0
|
O2
|
A:CFL2
|
4.4
|
0.0
|
1.0
|
C5
|
A:CFL3
|
4.4
|
0.0
|
1.0
|
C5'
|
A:CFL3
|
4.5
|
0.0
|
1.0
|
C2
|
A:CFL6
|
4.6
|
0.0
|
1.0
|
H5
|
A:CFL3
|
4.6
|
0.0
|
1.0
|
H5
|
A:CFL2
|
4.7
|
0.0
|
1.0
|
N3
|
A:CFL2
|
4.7
|
0.0
|
1.0
|
O5'
|
A:CFL3
|
4.8
|
0.0
|
1.0
|
H2''
|
A:DT1
|
4.8
|
0.0
|
1.0
|
C1'
|
A:CFL3
|
4.8
|
0.0
|
1.0
|
P
|
A:CFL3
|
4.8
|
0.0
|
1.0
|
C4
|
A:CFL2
|
4.8
|
0.0
|
1.0
|
C4'
|
A:CFL3
|
4.9
|
0.0
|
1.0
|
N3
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
O1P
|
A:CFL3
|
4.9
|
0.0
|
1.0
|
H5
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
C1'
|
A:CFL6
|
5.0
|
0.0
|
1.0
|
C2
|
A:CFL3
|
5.0
|
0.0
|
1.0
|
C4
|
A:CFL3
|
5.0
|
0.0
|
1.0
|
H3'
|
A:CFL3
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 2 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 2 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 2 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F3
b:0.0
occ:1.00
|
F
|
A:CFL3
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL3
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL3
|
2.1
|
0.0
|
1.0
|
H6
|
A:CFL3
|
2.3
|
0.0
|
1.0
|
C3'
|
A:CFL3
|
2.4
|
0.0
|
1.0
|
C1'
|
A:CFL3
|
2.4
|
0.0
|
1.0
|
H3'
|
A:CFL3
|
2.5
|
0.0
|
1.0
|
N1
|
A:CFL3
|
2.7
|
0.0
|
1.0
|
C6
|
A:CFL3
|
2.7
|
0.0
|
1.0
|
HN42
|
B:CFL11
|
2.8
|
0.0
|
1.0
|
HN41
|
B:CFL11
|
2.9
|
0.0
|
1.0
|
O4'
|
A:CFL4
|
2.9
|
0.0
|
1.0
|
H1'
|
A:CFL3
|
3.1
|
0.0
|
1.0
|
O3'
|
A:CFL3
|
3.2
|
0.0
|
1.0
|
N4
|
B:CFL11
|
3.2
|
0.0
|
1.0
|
O5'
|
A:CFL4
|
3.2
|
0.0
|
1.0
|
O4'
|
A:CFL3
|
3.4
|
0.0
|
1.0
|
O2
|
A:CFL5
|
3.5
|
0.0
|
1.0
|
C4'
|
A:CFL3
|
3.5
|
0.0
|
1.0
|
H4'
|
A:CFL4
|
3.6
|
0.0
|
1.0
|
C4'
|
A:CFL4
|
3.6
|
0.0
|
1.0
|
H1'
|
A:CFL5
|
3.7
|
0.0
|
1.0
|
P
|
A:CFL4
|
3.7
|
0.0
|
1.0
|
C2
|
A:CFL3
|
3.8
|
0.0
|
1.0
|
C5
|
A:CFL3
|
3.8
|
0.0
|
1.0
|
C5'
|
A:CFL4
|
3.9
|
0.0
|
1.0
|
H6
|
A:CFL4
|
3.9
|
0.0
|
1.0
|
O1P
|
A:CFL4
|
4.0
|
0.0
|
1.0
|
H4'
|
A:CFL3
|
4.0
|
0.0
|
1.0
|
C6
|
A:CFL4
|
4.1
|
0.0
|
1.0
|
C1'
|
A:CFL4
|
4.1
|
0.0
|
1.0
|
H5'2
|
A:CFL4
|
4.1
|
0.0
|
1.0
|
N1
|
A:CFL4
|
4.2
|
0.0
|
1.0
|
H5
|
A:CFL3
|
4.3
|
0.0
|
1.0
|
O2
|
A:CFL3
|
4.4
|
0.0
|
1.0
|
C4
|
B:CFL11
|
4.4
|
0.0
|
1.0
|
H1'
|
A:CFL4
|
4.5
|
0.0
|
1.0
|
N3
|
A:CFL3
|
4.6
|
0.0
|
1.0
|
C4
|
A:CFL3
|
4.6
|
0.0
|
1.0
|
C2
|
A:CFL5
|
4.6
|
0.0
|
1.0
|
C5
|
A:CFL4
|
4.7
|
0.0
|
1.0
|
H5'2
|
A:CFL3
|
4.7
|
0.0
|
1.0
|
C5'
|
A:CFL3
|
4.7
|
0.0
|
1.0
|
C1'
|
A:CFL5
|
4.7
|
0.0
|
1.0
|
H5'1
|
A:CFL4
|
4.9
|
0.0
|
1.0
|
C2
|
A:CFL4
|
4.9
|
0.0
|
1.0
|
H5
|
A:CFL4
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 3 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 3 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 3 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F4
b:0.0
occ:1.00
|
F
|
A:CFL4
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL4
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL4
|
2.0
|
0.0
|
1.0
|
H5'2
|
A:CFL4
|
2.3
|
0.0
|
1.0
|
C3'
|
A:CFL4
|
2.4
|
0.0
|
1.0
|
C1'
|
A:CFL4
|
2.4
|
0.0
|
1.0
|
H3'
|
A:CFL4
|
2.5
|
0.0
|
1.0
|
H6
|
A:CFL4
|
2.6
|
0.0
|
1.0
|
N1
|
A:CFL4
|
2.9
|
0.0
|
1.0
|
C4'
|
A:CFL4
|
2.9
|
0.0
|
1.0
|
C5'
|
A:CFL4
|
2.9
|
0.0
|
1.0
|
C6
|
A:CFL4
|
3.0
|
0.0
|
1.0
|
O4'
|
A:CFL4
|
3.0
|
0.0
|
1.0
|
H5'1
|
A:CFL4
|
3.2
|
0.0
|
1.0
|
H1'
|
A:CFL4
|
3.3
|
0.0
|
1.0
|
O3'
|
A:CFL4
|
3.6
|
0.0
|
1.0
|
O2P
|
A:CFL5
|
3.9
|
0.0
|
1.0
|
H4'
|
A:CFL4
|
3.9
|
0.0
|
1.0
|
C2
|
A:CFL4
|
4.0
|
0.0
|
1.0
|
C5
|
A:CFL4
|
4.2
|
0.0
|
1.0
|
O5'
|
A:CFL4
|
4.2
|
0.0
|
1.0
|
P
|
A:CFL5
|
4.4
|
0.0
|
1.0
|
O2
|
A:CFL4
|
4.6
|
0.0
|
1.0
|
H5
|
A:CFL4
|
4.7
|
0.0
|
1.0
|
O5'
|
A:CFL5
|
4.9
|
0.0
|
1.0
|
N3
|
A:CFL4
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 4 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 4 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 4 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F5
b:0.0
occ:1.00
|
F
|
A:CFL5
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL5
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL5
|
2.1
|
0.0
|
1.0
|
H6
|
A:CFL5
|
2.3
|
0.0
|
1.0
|
C1'
|
A:CFL5
|
2.4
|
0.0
|
1.0
|
C3'
|
A:CFL5
|
2.4
|
0.0
|
1.0
|
H3'
|
A:CFL5
|
2.5
|
0.0
|
1.0
|
N1
|
A:CFL5
|
2.7
|
0.0
|
1.0
|
C6
|
A:CFL5
|
2.7
|
0.0
|
1.0
|
HN42
|
B:CFL9
|
2.7
|
0.0
|
1.0
|
HN41
|
B:CFL9
|
2.8
|
0.0
|
1.0
|
H1'
|
A:CFL5
|
3.0
|
0.0
|
1.0
|
N4
|
B:CFL9
|
3.1
|
0.0
|
1.0
|
O1P
|
A:CFL6
|
3.1
|
0.0
|
1.0
|
O5'
|
A:CFL6
|
3.2
|
0.0
|
1.0
|
O3'
|
A:CFL5
|
3.2
|
0.0
|
1.0
|
H6
|
A:CFL6
|
3.3
|
0.0
|
1.0
|
O4'
|
A:CFL5
|
3.4
|
0.0
|
1.0
|
P
|
A:CFL6
|
3.5
|
0.0
|
1.0
|
O2
|
A:CFL3
|
3.5
|
0.0
|
1.0
|
C6
|
A:CFL6
|
3.5
|
0.0
|
1.0
|
O4'
|
A:CFL6
|
3.5
|
0.0
|
1.0
|
C4'
|
A:CFL5
|
3.5
|
0.0
|
1.0
|
H1'
|
A:CFL3
|
3.7
|
0.0
|
1.0
|
C5
|
A:CFL5
|
3.8
|
0.0
|
1.0
|
C2
|
A:CFL5
|
3.8
|
0.0
|
1.0
|
H5'1
|
A:CFL6
|
4.0
|
0.0
|
1.0
|
N1
|
A:CFL6
|
4.0
|
0.0
|
1.0
|
C5
|
A:CFL6
|
4.0
|
0.0
|
1.0
|
H4'
|
A:CFL5
|
4.0
|
0.0
|
1.0
|
C5'
|
A:CFL6
|
4.0
|
0.0
|
1.0
|
H5
|
A:CFL6
|
4.2
|
0.0
|
1.0
|
H5
|
A:CFL5
|
4.3
|
0.0
|
1.0
|
C4'
|
A:CFL6
|
4.4
|
0.0
|
1.0
|
C4
|
B:CFL9
|
4.4
|
0.0
|
1.0
|
C1'
|
A:CFL6
|
4.4
|
0.0
|
1.0
|
O2
|
A:CFL5
|
4.5
|
0.0
|
1.0
|
C4
|
A:CFL5
|
4.6
|
0.0
|
1.0
|
N3
|
A:CFL5
|
4.6
|
0.0
|
1.0
|
C2
|
A:CFL3
|
4.7
|
0.0
|
1.0
|
H5'2
|
A:CFL5
|
4.7
|
0.0
|
1.0
|
C5'
|
A:CFL5
|
4.8
|
0.0
|
1.0
|
C2
|
A:CFL6
|
4.8
|
0.0
|
1.0
|
H3'
|
A:CFL6
|
4.8
|
0.0
|
1.0
|
C1'
|
A:CFL3
|
4.8
|
0.0
|
1.0
|
C4
|
A:CFL6
|
4.8
|
0.0
|
1.0
|
O2P
|
A:CFL6
|
4.9
|
0.0
|
1.0
|
H2'
|
A:CFL3
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 5 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 5 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 5 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:F6
b:0.0
occ:1.00
|
F
|
A:CFL6
|
0.0
|
0.0
|
1.0
|
C2'
|
A:CFL6
|
1.4
|
0.0
|
1.0
|
H2'
|
A:CFL6
|
2.0
|
0.0
|
1.0
|
C3'
|
A:CFL6
|
2.4
|
0.0
|
1.0
|
C1'
|
A:CFL6
|
2.4
|
0.0
|
1.0
|
H3'
|
A:CFL6
|
2.5
|
0.0
|
1.0
|
N1
|
A:CFL6
|
2.7
|
0.0
|
1.0
|
C6
|
A:CFL6
|
2.9
|
0.0
|
1.0
|
H6
|
A:CFL6
|
3.0
|
0.0
|
1.0
|
H1'
|
A:CFL6
|
3.1
|
0.0
|
1.0
|
HN41
|
B:CFL8
|
3.1
|
0.0
|
1.0
|
O3'
|
A:CFL6
|
3.2
|
0.0
|
1.0
|
HN42
|
B:CFL8
|
3.2
|
0.0
|
1.0
|
O2
|
A:CFL2
|
3.4
|
0.0
|
1.0
|
O4'
|
A:CFL6
|
3.4
|
0.0
|
1.0
|
N4
|
B:CFL8
|
3.5
|
0.0
|
1.0
|
C2
|
A:CFL6
|
3.5
|
0.0
|
1.0
|
C4'
|
A:CFL6
|
3.5
|
0.0
|
1.0
|
HO3'
|
A:CFL6
|
3.6
|
0.0
|
1.0
|
H1'
|
A:CFL2
|
3.7
|
0.0
|
1.0
|
C5
|
A:CFL6
|
3.9
|
0.0
|
1.0
|
H4'
|
A:CFL6
|
4.1
|
0.0
|
1.0
|
O2
|
A:CFL6
|
4.1
|
0.0
|
1.0
|
H2'
|
A:CFL2
|
4.2
|
0.0
|
1.0
|
N3
|
A:CFL6
|
4.3
|
0.0
|
1.0
|
C4
|
A:CFL6
|
4.5
|
0.0
|
1.0
|
H5
|
A:CFL6
|
4.5
|
0.0
|
1.0
|
O3'
|
A:CFL2
|
4.5
|
0.0
|
1.0
|
C2
|
A:CFL2
|
4.6
|
0.0
|
1.0
|
C1'
|
A:CFL2
|
4.7
|
0.0
|
1.0
|
C4
|
B:CFL8
|
4.7
|
0.0
|
1.0
|
C5'
|
A:CFL6
|
4.7
|
0.0
|
1.0
|
O5'
|
A:CFL6
|
4.8
|
0.0
|
1.0
|
C2'
|
A:CFL2
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 6 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 6 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 6 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F8
b:0.0
occ:1.00
|
F
|
B:CFL8
|
0.0
|
0.0
|
1.0
|
C2'
|
B:CFL8
|
1.4
|
0.0
|
1.0
|
H2'
|
B:CFL8
|
2.0
|
0.0
|
1.0
|
HN42
|
A:CFL6
|
2.3
|
0.0
|
1.0
|
C3'
|
B:CFL8
|
2.4
|
0.0
|
1.0
|
H3'
|
B:CFL8
|
2.4
|
0.0
|
1.0
|
C1'
|
B:CFL8
|
2.4
|
0.0
|
1.0
|
H5'2
|
B:CFL8
|
2.5
|
0.0
|
1.0
|
HN41
|
A:CFL6
|
2.6
|
0.0
|
1.0
|
N1
|
B:CFL8
|
2.8
|
0.0
|
1.0
|
N4
|
A:CFL6
|
2.8
|
0.0
|
1.0
|
H6
|
B:CFL8
|
2.9
|
0.0
|
1.0
|
C6
|
B:CFL8
|
3.0
|
0.0
|
1.0
|
C4'
|
B:CFL8
|
3.0
|
0.0
|
1.0
|
O4'
|
B:CFL8
|
3.1
|
0.0
|
1.0
|
C5'
|
B:CFL8
|
3.2
|
0.0
|
1.0
|
H1'
|
B:CFL8
|
3.3
|
0.0
|
1.0
|
O2
|
B:CFL12
|
3.3
|
0.0
|
1.0
|
C6
|
B:CFL9
|
3.4
|
0.0
|
1.0
|
H6
|
B:CFL9
|
3.5
|
0.0
|
1.0
|
O3'
|
B:CFL8
|
3.6
|
0.0
|
1.0
|
C5
|
B:CFL9
|
3.6
|
0.0
|
1.0
|
C2
|
B:CFL8
|
3.7
|
0.0
|
1.0
|
H5'1
|
B:CFL8
|
3.8
|
0.0
|
1.0
|
H5
|
B:CFL9
|
3.8
|
0.0
|
1.0
|
N1
|
B:CFL9
|
3.8
|
0.0
|
1.0
|
H1'
|
B:CFL12
|
3.9
|
0.0
|
1.0
|
C5
|
B:CFL8
|
4.0
|
0.0
|
1.0
|
H4'
|
B:CFL8
|
4.1
|
0.0
|
1.0
|
C4
|
A:CFL6
|
4.1
|
0.0
|
1.0
|
O2
|
B:CFL8
|
4.2
|
0.0
|
1.0
|
C4
|
B:CFL9
|
4.3
|
0.0
|
1.0
|
O4'
|
B:CFL9
|
4.3
|
0.0
|
1.0
|
O5'
|
B:CFL8
|
4.4
|
0.0
|
1.0
|
N3
|
B:CFL8
|
4.5
|
0.0
|
1.0
|
C2
|
B:CFL9
|
4.5
|
0.0
|
1.0
|
H5
|
B:CFL8
|
4.5
|
0.0
|
1.0
|
C2
|
B:CFL12
|
4.6
|
0.0
|
1.0
|
C4
|
B:CFL8
|
4.6
|
0.0
|
1.0
|
C1'
|
B:CFL9
|
4.6
|
0.0
|
1.0
|
N3
|
B:CFL9
|
4.7
|
0.0
|
1.0
|
H5
|
A:CFL6
|
4.8
|
0.0
|
1.0
|
O5'
|
B:CFL9
|
4.8
|
0.0
|
1.0
|
P
|
B:CFL9
|
4.8
|
0.0
|
1.0
|
C1'
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
N3
|
A:CFL6
|
4.9
|
0.0
|
1.0
|
H2'
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
C5
|
A:CFL6
|
4.9
|
0.0
|
1.0
|
H2''
|
B:DT7
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 7 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 7 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 7 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F9
b:0.0
occ:1.00
|
F
|
B:CFL9
|
0.0
|
0.0
|
1.0
|
C2'
|
B:CFL9
|
1.4
|
0.0
|
1.0
|
H2'
|
B:CFL9
|
2.1
|
0.0
|
1.0
|
H6
|
B:CFL9
|
2.3
|
0.0
|
1.0
|
C3'
|
B:CFL9
|
2.4
|
0.0
|
1.0
|
C1'
|
B:CFL9
|
2.4
|
0.0
|
1.0
|
H3'
|
B:CFL9
|
2.5
|
0.0
|
1.0
|
C6
|
B:CFL9
|
2.7
|
0.0
|
1.0
|
N1
|
B:CFL9
|
2.7
|
0.0
|
1.0
|
HN42
|
A:CFL5
|
2.8
|
0.0
|
1.0
|
O4'
|
B:CFL10
|
3.0
|
0.0
|
1.0
|
HN41
|
A:CFL5
|
3.0
|
0.0
|
1.0
|
H1'
|
B:CFL9
|
3.1
|
0.0
|
1.0
|
O5'
|
B:CFL10
|
3.1
|
0.0
|
1.0
|
O3'
|
B:CFL9
|
3.2
|
0.0
|
1.0
|
N4
|
A:CFL5
|
3.2
|
0.0
|
1.0
|
O4'
|
B:CFL9
|
3.5
|
0.0
|
1.0
|
C4'
|
B:CFL9
|
3.5
|
0.0
|
1.0
|
H4'
|
B:CFL10
|
3.6
|
0.0
|
1.0
|
C4'
|
B:CFL10
|
3.6
|
0.0
|
1.0
|
P
|
B:CFL10
|
3.7
|
0.0
|
1.0
|
C5
|
B:CFL9
|
3.7
|
0.0
|
1.0
|
O2
|
B:CFL11
|
3.7
|
0.0
|
1.0
|
C2
|
B:CFL9
|
3.8
|
0.0
|
1.0
|
H6
|
B:CFL10
|
3.8
|
0.0
|
1.0
|
C5'
|
B:CFL10
|
3.8
|
0.0
|
1.0
|
H1'
|
B:CFL11
|
3.8
|
0.0
|
1.0
|
H4'
|
B:CFL9
|
3.9
|
0.0
|
1.0
|
O2P
|
B:CFL10
|
3.9
|
0.0
|
1.0
|
H5'2
|
B:CFL10
|
4.0
|
0.0
|
1.0
|
C6
|
B:CFL10
|
4.1
|
0.0
|
1.0
|
H5
|
B:CFL9
|
4.2
|
0.0
|
1.0
|
C1'
|
B:CFL10
|
4.2
|
0.0
|
1.0
|
O2
|
B:CFL9
|
4.4
|
0.0
|
1.0
|
N1
|
B:CFL10
|
4.4
|
0.0
|
1.0
|
C4
|
A:CFL5
|
4.5
|
0.0
|
1.0
|
C4
|
B:CFL9
|
4.5
|
0.0
|
1.0
|
N3
|
B:CFL9
|
4.5
|
0.0
|
1.0
|
H1'
|
B:CFL10
|
4.7
|
0.0
|
1.0
|
H5'1
|
B:CFL10
|
4.8
|
0.0
|
1.0
|
C5'
|
B:CFL9
|
4.8
|
0.0
|
1.0
|
C5
|
B:CFL10
|
4.9
|
0.0
|
1.0
|
C2
|
B:CFL11
|
4.9
|
0.0
|
1.0
|
C1'
|
B:CFL11
|
4.9
|
0.0
|
1.0
|
O5'
|
B:CFL9
|
5.0
|
0.0
|
1.0
|
O1P
|
B:CFL10
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 8 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 8 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 8 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F10
b:0.0
occ:1.00
|
F
|
B:CFL10
|
0.0
|
0.0
|
1.0
|
C2'
|
B:CFL10
|
1.4
|
0.0
|
1.0
|
H2'
|
B:CFL10
|
2.0
|
0.0
|
1.0
|
H5'2
|
B:CFL10
|
2.3
|
0.0
|
1.0
|
C3'
|
B:CFL10
|
2.4
|
0.0
|
1.0
|
C1'
|
B:CFL10
|
2.4
|
0.0
|
1.0
|
H3'
|
B:CFL10
|
2.5
|
0.0
|
1.0
|
H6
|
B:CFL10
|
2.7
|
0.0
|
1.0
|
N1
|
B:CFL10
|
2.9
|
0.0
|
1.0
|
C4'
|
B:CFL10
|
2.9
|
0.0
|
1.0
|
C5'
|
B:CFL10
|
2.9
|
0.0
|
1.0
|
O4'
|
B:CFL10
|
3.0
|
0.0
|
1.0
|
C6
|
B:CFL10
|
3.0
|
0.0
|
1.0
|
H5'1
|
B:CFL10
|
3.2
|
0.0
|
1.0
|
H1'
|
B:CFL10
|
3.3
|
0.0
|
1.0
|
O3'
|
B:CFL10
|
3.6
|
0.0
|
1.0
|
H4'
|
B:CFL10
|
3.9
|
0.0
|
1.0
|
C2
|
B:CFL10
|
4.0
|
0.0
|
1.0
|
C5
|
B:CFL10
|
4.2
|
0.0
|
1.0
|
O5'
|
B:CFL10
|
4.2
|
0.0
|
1.0
|
P
|
B:CFL11
|
4.4
|
0.0
|
1.0
|
O2P
|
B:CFL11
|
4.4
|
0.0
|
1.0
|
O2
|
B:CFL10
|
4.5
|
0.0
|
1.0
|
O1P
|
B:CFL11
|
4.5
|
0.0
|
1.0
|
H5
|
B:CFL10
|
4.7
|
0.0
|
1.0
|
N3
|
B:CFL10
|
4.9
|
0.0
|
1.0
|
|
Fluorine binding site 9 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 9 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 9 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F11
b:0.0
occ:1.00
|
F
|
B:CFL11
|
0.0
|
0.0
|
1.0
|
C2'
|
B:CFL11
|
1.4
|
0.0
|
1.0
|
H2'
|
B:CFL11
|
2.1
|
0.0
|
1.0
|
H6
|
B:CFL11
|
2.3
|
0.0
|
1.0
|
C3'
|
B:CFL11
|
2.4
|
0.0
|
1.0
|
C1'
|
B:CFL11
|
2.4
|
0.0
|
1.0
|
HN42
|
A:CFL3
|
2.4
|
0.0
|
1.0
|
H3'
|
B:CFL11
|
2.4
|
0.0
|
1.0
|
HN41
|
A:CFL3
|
2.6
|
0.0
|
1.0
|
N1
|
B:CFL11
|
2.7
|
0.0
|
1.0
|
C6
|
B:CFL11
|
2.7
|
0.0
|
1.0
|
N4
|
A:CFL3
|
2.9
|
0.0
|
1.0
|
H1'
|
B:CFL11
|
3.1
|
0.0
|
1.0
|
O3'
|
B:CFL11
|
3.2
|
0.0
|
1.0
|
O5'
|
B:CFL12
|
3.2
|
0.0
|
1.0
|
O2P
|
B:CFL12
|
3.3
|
0.0
|
1.0
|
O2
|
B:CFL9
|
3.4
|
0.0
|
1.0
|
H6
|
B:CFL12
|
3.4
|
0.0
|
1.0
|
O4'
|
B:CFL11
|
3.4
|
0.0
|
1.0
|
O4'
|
B:CFL12
|
3.5
|
0.0
|
1.0
|
P
|
B:CFL12
|
3.5
|
0.0
|
1.0
|
C4'
|
B:CFL11
|
3.5
|
0.0
|
1.0
|
C6
|
B:CFL12
|
3.7
|
0.0
|
1.0
|
H1'
|
B:CFL9
|
3.7
|
0.0
|
1.0
|
C2
|
B:CFL11
|
3.8
|
0.0
|
1.0
|
C5
|
B:CFL11
|
3.8
|
0.0
|
1.0
|
H5'1
|
B:CFL12
|
3.9
|
0.0
|
1.0
|
C5'
|
B:CFL12
|
4.0
|
0.0
|
1.0
|
H4'
|
B:CFL11
|
4.1
|
0.0
|
1.0
|
N1
|
B:CFL12
|
4.1
|
0.0
|
1.0
|
C5
|
B:CFL12
|
4.1
|
0.0
|
1.0
|
C4
|
A:CFL3
|
4.1
|
0.0
|
1.0
|
H5
|
B:CFL12
|
4.3
|
0.0
|
1.0
|
H5
|
B:CFL11
|
4.3
|
0.0
|
1.0
|
C4'
|
B:CFL12
|
4.4
|
0.0
|
1.0
|
O2
|
B:CFL11
|
4.4
|
0.0
|
1.0
|
C1'
|
B:CFL12
|
4.4
|
0.0
|
1.0
|
C2
|
B:CFL9
|
4.6
|
0.0
|
1.0
|
C4
|
B:CFL11
|
4.6
|
0.0
|
1.0
|
N3
|
B:CFL11
|
4.6
|
0.0
|
1.0
|
C1'
|
B:CFL9
|
4.7
|
0.0
|
1.0
|
C5'
|
B:CFL11
|
4.7
|
0.0
|
1.0
|
H5
|
A:CFL3
|
4.8
|
0.0
|
1.0
|
H5'2
|
B:CFL11
|
4.8
|
0.0
|
1.0
|
C2
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
N3
|
A:CFL3
|
4.9
|
0.0
|
1.0
|
C4
|
B:CFL12
|
4.9
|
0.0
|
1.0
|
H5'1
|
B:CFL11
|
4.9
|
0.0
|
1.0
|
H2'
|
B:CFL9
|
4.9
|
0.0
|
1.0
|
C5
|
A:CFL3
|
5.0
|
0.0
|
1.0
|
O1P
|
B:CFL12
|
5.0
|
0.0
|
1.0
|
H1'
|
B:CFL12
|
5.0
|
0.0
|
1.0
|
|
Fluorine binding site 10 out
of 10 in 7zyx
Go back to
Fluorine Binding Sites List in 7zyx
Fluorine binding site 10 out
of 10 in the Dimeric I-Motif From 2'Farabinocytidine-Modified TC5
Mono view
Stereo pair view
|
A full contact list of Fluorine with other atoms in the F binding
site number 10 of Dimeric I-Motif From 2'Farabinocytidine-Modified TC5 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:F12
b:0.0
occ:1.00
|
F
|
B:CFL12
|
0.0
|
0.0
|
1.0
|
C2'
|
B:CFL12
|
1.4
|
0.0
|
1.0
|
H2'
|
B:CFL12
|
2.0
|
0.0
|
1.0
|
C3'
|
B:CFL12
|
2.4
|
0.0
|
1.0
|
H3'
|
B:CFL12
|
2.4
|
0.0
|
1.0
|
C1'
|
B:CFL12
|
2.4
|
0.0
|
1.0
|
HN42
|
A:CFL2
|
2.7
|
0.0
|
1.0
|
N1
|
B:CFL12
|
2.7
|
0.0
|
1.0
|
HN41
|
A:CFL2
|
2.7
|
0.0
|
1.0
|
HO3'
|
B:CFL12
|
2.9
|
0.0
|
1.0
|
C6
|
B:CFL12
|
3.0
|
0.0
|
1.0
|
H6
|
B:CFL12
|
3.0
|
0.0
|
1.0
|
N4
|
A:CFL2
|
3.0
|
0.0
|
1.0
|
H1'
|
B:CFL12
|
3.1
|
0.0
|
1.0
|
O3'
|
B:CFL12
|
3.2
|
0.0
|
1.0
|
O2
|
B:CFL8
|
3.3
|
0.0
|
1.0
|
O4'
|
B:CFL12
|
3.4
|
0.0
|
1.0
|
C4'
|
B:CFL12
|
3.5
|
0.0
|
1.0
|
C2
|
B:CFL12
|
3.6
|
0.0
|
1.0
|
H1'
|
B:CFL8
|
3.8
|
0.0
|
1.0
|
C5
|
B:CFL12
|
4.0
|
0.0
|
1.0
|
H4'
|
B:CFL12
|
4.0
|
0.0
|
1.0
|
O2
|
B:CFL12
|
4.1
|
0.0
|
1.0
|
H2'
|
B:CFL8
|
4.2
|
0.0
|
1.0
|
C4
|
A:CFL2
|
4.3
|
0.0
|
1.0
|
C2
|
B:CFL8
|
4.5
|
0.0
|
1.0
|
N3
|
B:CFL12
|
4.5
|
0.0
|
1.0
|
C4
|
B:CFL12
|
4.6
|
0.0
|
1.0
|
H5
|
B:CFL12
|
4.6
|
0.0
|
1.0
|
C5'
|
B:CFL12
|
4.7
|
0.0
|
1.0
|
C1'
|
B:CFL8
|
4.8
|
0.0
|
1.0
|
O5'
|
B:CFL12
|
4.8
|
0.0
|
1.0
|
H73
|
A:DT1
|
4.9
|
0.0
|
1.0
|
N3
|
A:CFL2
|
5.0
|
0.0
|
1.0
|
C2'
|
B:CFL8
|
5.0
|
0.0
|
1.0
|
|
Reference:
R.El-Khoury,
V.Macaluso,
C.Hennecker,
A.K.Mittermaier,
M.Orozco,
C.Gonzalez,
M.Garavis,
M.J.Damha.
I-Motif Folding Intermediates with Zero-Nucleotide Loops Are Trapped By 2'-Fluoroarabinocytidine Via F···H and O···H Hydrogen Bonds. Commun Chem V. 6 31 2023.
ISSN: ESSN 2399-3669
PubMed: 36797370
DOI: 10.1038/S42004-023-00831-7
Page generated: Fri Aug 2 16:22:52 2024
|