Fluorine in PDB 8b3d: Structure of the Pol II-Tcr-ELOF1 Complex.

Enzymatic activity of Structure of the Pol II-Tcr-ELOF1 Complex.

All present enzymatic activity of Structure of the Pol II-Tcr-ELOF1 Complex.:
2.7.7.6;

Other elements in 8b3d:

The structure of Structure of the Pol II-Tcr-ELOF1 Complex. also contains other interesting chemical elements:

Zinc (Zn) 10 atoms
Magnesium (Mg) 2 atoms

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Structure of the Pol II-Tcr-ELOF1 Complex. (pdb code 8b3d). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 3 binding sites of Fluorine where determined in the Structure of the Pol II-Tcr-ELOF1 Complex., PDB code: 8b3d:
Jump to Fluorine binding site number: 1; 2; 3;

Fluorine binding site 1 out of 3 in 8b3d

Go back to Fluorine Binding Sites List in 8b3d
Fluorine binding site 1 out of 3 in the Structure of the Pol II-Tcr-ELOF1 Complex.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:30.9
occ:1.00
F1 b:BEF1502 0.0 30.9 1.0
BE b:BEF1502 1.5 30.9 1.0
HH12 b:ARG950 1.8 34.3 1.0
HH22 b:ARG950 2.1 34.3 1.0
O3B b:ADP1501 2.2 37.1 1.0
HH22 b:ARG947 2.4 31.6 1.0
F3 b:BEF1502 2.5 30.9 1.0
F2 b:BEF1502 2.6 30.9 1.0
NH1 b:ARG950 2.6 34.3 1.0
H b:GLY535 2.7 31.9 1.0
HA b:MET534 2.7 34.4 1.0
HH12 b:ARG947 2.7 31.6 1.0
NH2 b:ARG950 2.8 34.3 1.0
HB3 b:MET534 3.0 34.4 1.0
HG3 b:MET534 3.1 34.4 1.0
CZ b:ARG950 3.1 34.3 1.0
HA2 b:GLY920 3.1 30.0 1.0
PB b:ADP1501 3.2 37.1 1.0
NH2 b:ARG947 3.3 31.6 1.0
N b:GLY535 3.3 31.9 1.0
HH11 b:ARG950 3.3 34.3 1.0
CA b:MET534 3.4 34.4 1.0
CB b:MET534 3.5 34.4 1.0
O1B b:ADP1501 3.5 37.1 1.0
NH1 b:ARG947 3.5 31.6 1.0
HH21 b:ARG950 3.6 34.3 1.0
O3A b:ADP1501 3.7 37.1 1.0
CG b:MET534 3.7 34.4 1.0
C b:MET534 3.8 34.4 1.0
CZ b:ARG947 3.8 31.6 1.0
HZ1 b:LYS538 3.9 32.0 1.0
HH21 b:ARG947 3.9 31.6 1.0
CA b:GLY920 4.1 30.0 1.0
HA2 b:GLY535 4.1 31.9 1.0
HH11 b:ARG947 4.2 31.6 1.0
HG2 b:MET534 4.2 34.4 1.0
H b:GLY920 4.2 30.0 1.0
CA b:GLY535 4.3 31.9 1.0
MG b:MG1503 4.3 18.3 1.0
HB2 b:MET534 4.4 34.4 1.0
HZ3 b:LYS538 4.4 32.0 1.0
NE b:ARG950 4.4 34.3 1.0
NZ b:LYS538 4.6 32.0 1.0
O b:GLY920 4.6 30.0 1.0
O2B b:ADP1501 4.6 37.1 1.0
C b:GLY920 4.6 30.0 1.0
N b:GLY920 4.6 30.0 1.0
HA3 b:GLY920 4.6 30.0 1.0
N b:MET534 4.7 34.4 1.0
OE2 b:GLU647 4.7 30.0 1.0
HA3 b:GLY535 4.8 31.9 1.0
HE b:ARG950 4.9 34.3 1.0
O b:MET534 4.9 34.4 1.0

Fluorine binding site 2 out of 3 in 8b3d

Go back to Fluorine Binding Sites List in 8b3d
Fluorine binding site 2 out of 3 in the Structure of the Pol II-Tcr-ELOF1 Complex.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:30.9
occ:1.00
F2 b:BEF1502 0.0 30.9 1.0
BE b:BEF1502 1.6 30.9 1.0
HZ1 b:LYS538 2.0 32.0 1.0
F3 b:BEF1502 2.5 30.9 1.0
F1 b:BEF1502 2.6 30.9 1.0
HG3 b:MET534 2.6 34.4 1.0
HA b:MET534 2.7 34.4 1.0
NZ b:LYS538 2.9 32.0 1.0
O3B b:ADP1501 3.0 37.1 1.0
HZ3 b:LYS538 3.2 32.0 1.0
H b:GLY675 3.4 31.3 1.0
O1B b:ADP1501 3.4 37.1 1.0
HZ2 b:LYS538 3.4 32.0 1.0
CG b:MET534 3.5 34.4 1.0
HE2 b:LYS538 3.5 32.0 1.0
CA b:MET534 3.5 34.4 1.0
CE b:LYS538 3.6 32.0 1.0
HE3 b:LYS538 3.6 32.0 1.0
HH22 b:ARG947 3.7 31.6 1.0
PB b:ADP1501 3.7 37.1 1.0
H b:GLY535 3.9 31.9 1.0
OE2 b:GLU647 3.9 30.0 1.0
CB b:MET534 3.9 34.4 1.0
OE1 b:GLU647 4.0 30.0 1.0
SD b:MET534 4.1 34.4 1.0
HB3 b:MET534 4.1 34.4 1.0
HA3 b:GLY675 4.1 31.3 1.0
HA2 b:GLY920 4.1 30.0 1.0
N b:GLY675 4.1 31.3 1.0
HH12 b:ARG950 4.2 34.3 1.0
N b:MET534 4.2 34.4 1.0
HG2 b:MET534 4.2 34.4 1.0
MG b:MG1503 4.3 18.3 1.0
CD b:GLU647 4.4 30.0 1.0
HH22 b:ARG950 4.4 34.3 1.0
HA b:SER674 4.5 28.6 1.0
NH2 b:ARG947 4.5 31.6 1.0
H b:MET534 4.5 34.4 1.0
N b:GLY535 4.5 31.9 1.0
C b:MET534 4.6 34.4 1.0
O b:GLU533 4.7 34.4 1.0
C b:GLU533 4.7 34.4 1.0
CA b:GLY675 4.7 31.3 1.0
O2B b:ADP1501 4.7 37.1 1.0
HH21 b:ARG947 4.8 31.6 1.0
HB2 b:MET534 4.8 34.4 1.0
OE1 b:GLN943 4.8 32.6 1.0
HH12 b:ARG947 4.9 31.6 1.0
O b:ASP532 4.9 34.0 1.0
O3A b:ADP1501 5.0 37.1 1.0

Fluorine binding site 3 out of 3 in 8b3d

Go back to Fluorine Binding Sites List in 8b3d
Fluorine binding site 3 out of 3 in the Structure of the Pol II-Tcr-ELOF1 Complex.


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Structure of the Pol II-Tcr-ELOF1 Complex. within 5.0Å range:
probe atom residue distance (Å) B Occ
b:F1502

b:30.9
occ:1.00
F3 b:BEF1502 0.0 30.9 1.0
BE b:BEF1502 1.5 30.9 1.0
MG b:MG1503 2.0 18.3 1.0
O1B b:ADP1501 2.2 37.1 1.0
F2 b:BEF1502 2.5 30.9 1.0
F1 b:BEF1502 2.5 30.9 1.0
HA2 b:GLY920 2.5 30.0 1.0
PB b:ADP1501 3.1 37.1 1.0
O3B b:ADP1501 3.2 37.1 1.0
OE2 b:GLU647 3.2 30.0 1.0
HH12 b:ARG950 3.3 34.3 1.0
CA b:GLY920 3.4 30.0 1.0
HA3 b:GLY920 3.4 30.0 1.0
O3A b:ADP1501 3.7 37.1 1.0
HZ1 b:LYS538 3.8 32.0 1.0
CD b:GLU647 4.0 30.0 1.0
O b:GLY920 4.1 30.0 1.0
HH12 b:ARG947 4.1 31.6 1.0
NH1 b:ARG950 4.1 34.3 1.0
HE2 b:LYS538 4.1 32.0 1.0
HH22 b:ARG947 4.1 31.6 1.0
C b:GLY920 4.2 30.0 1.0
N b:GLY920 4.3 30.0 1.0
HZ3 b:LYS538 4.3 32.0 1.0
HH11 b:ARG950 4.4 34.3 1.0
H b:GLY920 4.4 30.0 1.0
HG3 b:MET534 4.4 34.4 1.0
NZ b:LYS538 4.4 32.0 1.0
OE1 b:GLU647 4.4 30.0 1.0
OD1 b:ASP646 4.4 29.1 1.0
HA b:MET534 4.4 34.4 1.0
O2B b:ADP1501 4.5 37.1 1.0
H b:GLY535 4.6 31.9 1.0
HH22 b:ARG950 4.6 34.3 1.0
CE b:LYS538 4.8 32.0 1.0
NH1 b:ARG947 4.8 31.6 1.0
HG2 b:GLU647 4.9 30.0 1.0
NH2 b:ARG947 4.9 31.6 1.0
HB2 b:LYS538 4.9 32.0 1.0
OD2 b:ASP646 4.9 29.1 1.0
PA b:ADP1501 5.0 37.1 1.0

Reference:

G.Kokic, P.Cramer. Structure of the Pol II-Tcr-ELOF1 Complex. To Be Published.
Page generated: Fri Aug 2 16:38:55 2024

Last articles

Na in 4GM4
Na in 4GM1
Na in 4GM0
Na in 4GLY
Na in 4GIQ
Na in 4GIR
Na in 4GG1
Na in 4GK9
Na in 4GCV
Na in 4GFI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy