Fluorine in PDB 8b9g: Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna

Enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna

All present enzymatic activity of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna:
3.6.4.13;

Other elements in 8b9g:

The structure of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna also contains other interesting chemical elements:

Aluminium (Al) 1 atom

Fluorine Binding Sites:

The binding sites of Fluorine atom in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna (pdb code 8b9g). This binding sites where shown within 5.0 Angstroms radius around Fluorine atom.
In total 4 binding sites of Fluorine where determined in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna, PDB code: 8b9g:
Jump to Fluorine binding site number: 1; 2; 3; 4;

Fluorine binding site 1 out of 4 in 8b9g

Go back to Fluorine Binding Sites List in 8b9g
Fluorine binding site 1 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 1 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:27.1
occ:1.00
 F1 A:ALF1202 0.0 27.1 1.0
AL A:ALF1202 1.9 27.1 1.0
OG1 A:THR414 2.4 24.5 1.0
F4 A:ALF1202 2.6 27.1 1.0
F3 A:ALF1202 2.6 27.1 1.0
O2B A:ADP1201 2.8 11.0 1.0
O A:HOH1301 3.0 30.0 1.0
O3B A:ADP1201 3.3 11.0 1.0
CA A:SER723 3.5 24.5 1.0
PB A:ADP1201 3.5 11.0 1.0
CB A:THR414 3.6 24.5 1.0
O A:HOH1302 3.6 19.6 1.0
OG A:SER723 3.7 24.5 1.0
F2 A:ALF1202 3.7 27.1 1.0
O2A A:ADP1201 3.8 11.0 1.0
CB A:SER723 3.9 24.5 1.0
CG2 A:THR414 4.2 24.5 1.0
OD1 A:ASP507 4.2 24.5 1.0
OE2 A:GLU508 4.2 24.5 1.0
O A:SER723 4.2 24.5 1.0
C A:SER723 4.3 24.5 1.0
N A:SER723 4.4 24.5 1.0
O3A A:ADP1201 4.5 11.0 1.0
CD A:GLU508 4.6 24.5 1.0
PA A:ADP1201 4.6 11.0 1.0
N A:THR414 4.7 24.5 1.0
CA A:THR414 4.8 24.5 1.0
O1B A:ADP1201 4.8 11.0 1.0
OE1 A:GLN440 4.8 24.5 1.0
NH2 A:ARG771 4.8 24.5 0.5
CG A:ASP507 4.9 24.5 1.0
O A:HOH1303 5.0 17.6 1.0
OE1 A:GLU508 5.0 24.5 1.0

Fluorine binding site 2 out of 4 in 8b9g

Go back to Fluorine Binding Sites List in 8b9g
Fluorine binding site 2 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 2 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:27.1
occ:1.00
 F2 A:ALF1202 0.0 27.1 1.0
AL A:ALF1202 1.9 27.1 1.0
F3 A:ALF1202 2.6 27.1 1.0
F4 A:ALF1202 2.7 27.1 1.0
CE A:LYS413 2.8 24.5 1.0
OD2 A:ASP507 3.2 24.5 1.0
CB A:LYS413 3.3 24.5 1.0
OG1 A:THR414 3.3 24.5 1.0
O2B A:ADP1201 3.5 11.0 1.0
CD A:LYS413 3.6 24.5 1.0
CG A:ASP507 3.7 24.5 1.0
F1 A:ALF1202 3.7 27.1 1.0
NZ A:LYS413 3.8 24.5 1.0
OD1 A:ASP507 3.9 24.5 1.0
O A:HOH1303 3.9 17.6 1.0
N A:THR414 3.9 24.5 1.0
CG A:MET538 4.0 24.5 1.0
CG A:LYS413 4.0 24.5 1.0
CB A:MET538 4.0 24.5 1.0
OE1 A:GLU508 4.2 24.5 1.0
O A:MET538 4.2 24.5 1.0
PB A:ADP1201 4.3 11.0 1.0
O1B A:ADP1201 4.3 11.0 1.0
C A:MET538 4.4 24.5 1.0
SD A:MET538 4.4 24.5 1.0
CA A:LYS413 4.4 24.5 1.0
CB A:THR414 4.5 24.5 1.0
C A:LYS413 4.5 24.5 1.0
CA A:THR414 4.6 24.5 1.0
CD A:GLU508 4.7 24.5 1.0
O3B A:ADP1201 4.7 11.0 1.0
CB A:ASP507 4.7 24.5 1.0
N A:SER539 4.7 24.5 1.0
CA A:SER539 4.9 24.5 1.0
CA A:MET538 4.9 24.5 1.0

Fluorine binding site 3 out of 4 in 8b9g

Go back to Fluorine Binding Sites List in 8b9g
Fluorine binding site 3 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 3 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:27.1
occ:1.00
 F3 A:ALF1202 0.0 27.1 1.0
AL A:ALF1202 1.8 27.1 1.0
O3B A:ADP1201 2.4 11.0 1.0
O A:HOH1302 2.5 19.6 1.0
F2 A:ALF1202 2.6 27.1 1.0
F1 A:ALF1202 2.6 27.1 1.0
O2B A:ADP1201 2.7 11.0 1.0
PB A:ADP1201 2.7 11.0 1.0
O A:HOH1303 3.0 17.6 1.0
O1B A:ADP1201 3.2 11.0 1.0
NZ A:LYS413 3.3 24.5 1.0
CE A:LYS413 3.4 24.5 1.0
F4 A:ALF1202 3.6 27.1 1.0
OG1 A:THR414 3.6 24.5 1.0
OE1 A:GLU508 4.1 24.5 1.0
OE2 A:GLU508 4.1 24.5 1.0
O3A A:ADP1201 4.2 11.0 1.0
CD A:GLU508 4.3 24.5 1.0
CB A:LYS413 4.6 24.5 1.0
CD A:LYS413 4.7 24.5 1.0
NH2 A:ARG771 4.8 24.5 0.5
N A:THR414 4.9 24.5 1.0

Fluorine binding site 4 out of 4 in 8b9g

Go back to Fluorine Binding Sites List in 8b9g
Fluorine binding site 4 out of 4 in the Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna


Mono view


Stereo pair view

A full contact list of Fluorine with other atoms in the F binding site number 4 of Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:F1202

b:27.1
occ:1.00
 F4 A:ALF1202 0.0 27.1 1.0
OG1 A:THR414 1.6 24.5 1.0
AL A:ALF1202 1.8 27.1 1.0
OD1 A:ASP507 1.9 24.5 1.0
CG A:ASP507 2.5 24.5 1.0
F1 A:ALF1202 2.6 27.1 1.0
F2 A:ALF1202 2.7 27.1 1.0
CB A:THR414 2.7 24.5 1.0
OD2 A:ASP507 2.9 24.5 1.0
CG2 A:THR414 3.0 24.5 1.0
CA A:THR414 3.5 24.5 1.0
O2B A:ADP1201 3.5 11.0 1.0
CB A:ASP507 3.6 24.5 1.0
F3 A:ALF1202 3.6 27.1 1.0
N A:THR414 3.7 24.5 1.0
NE2 A:GLN440 3.8 24.5 1.0
OE1 A:GLN440 4.5 24.5 1.0
CD A:GLN440 4.6 24.5 1.0
OG A:SER723 4.7 24.5 1.0
CA A:ASP507 4.7 24.5 1.0
PB A:ADP1201 4.8 11.0 1.0
C A:LYS413 4.8 24.5 1.0
CD A:GLU508 4.9 24.5 1.0
C A:THR414 4.9 24.5 1.0
CB A:LYS413 4.9 24.5 1.0
O A:HOH1301 5.0 30.0 1.0

Reference:

P.K.A.Jagtap, J.Hennig. Cryo-Em Structure of Mle in Complex with Adp:ALF4 and U10 Rna To Be Published.
Page generated: Fri Aug 2 16:45:05 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy